Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4842 and Psyr_4843 are separated by 21 nucleotides Psyr_4843 and Psyr_4844 are separated by 142 nucleotides Psyr_4844 and Psyr_4845 are separated by 13 nucleotides Psyr_4845 and Psyr_4846 are separated by 531 nucleotides
Psyr_4842: Psyr_4842 - Phosphoenolpyruvate-protein phosphotransferase, at 5,747,721 to 5,750,000
_4842
Psyr_4843: Psyr_4843 - NUDIX hydrolase, at 5,750,022 to 5,750,501
_4843
Psyr_4844: Psyr_4844 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 5,750,644 to 5,751,300
_4844
Psyr_4845: Psyr_4845 - conserved hypothetical protein, at 5,751,314 to 5,751,742
_4845
Psyr_4846: Psyr_4846 - L-threonine ammonia-lyase, at 5,752,274 to 5,753,788
_4846
Position (kb) 5750
5751
5752 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5749.708 kb on + strand, within Psyr_4842 at 5749.879 kb on + strand at 5749.880 kb on - strand at 5749.928 kb on + strand at 5749.965 kb on - strand at 5749.965 kb on - strand at 5749.991 kb on + strand at 5749.992 kb on - strand at 5750.035 kb on - strand at 5750.117 kb on - strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.474 kb on + strand at 5750.474 kb on + strand at 5750.569 kb on + strand at 5750.569 kb on + strand at 5750.570 kb on - strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.625 kb on + strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.637 kb on + strand at 5750.638 kb on - strand at 5750.643 kb on + strand at 5750.657 kb on + strand at 5750.658 kb on - strand at 5750.658 kb on - strand at 5750.713 kb on + strand, within Psyr_4844 at 5750.713 kb on + strand, within Psyr_4844 at 5750.750 kb on - strand, within Psyr_4844 at 5750.773 kb on + strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.782 kb on + strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.243 kb on + strand at 5751.285 kb on + strand at 5751.285 kb on + strand at 5751.286 kb on - strand at 5751.311 kb on + strand at 5751.312 kb on - strand at 5751.312 kb on - strand at 5751.312 kb on - strand at 5751.474 kb on + strand at 5751.475 kb on - strand, within Psyr_4845 at 5751.475 kb on - strand, within Psyr_4845 at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.722 kb on - strand at 5751.781 kb on - strand at 5751.781 kb on - strand at 5751.795 kb on + strand at 5751.795 kb on + strand at 5751.795 kb on + strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.838 kb on + strand at 5751.838 kb on + strand at 5751.839 kb on - strand at 5751.962 kb on + strand at 5751.962 kb on + strand at 5751.964 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.085 kb on - strand at 5752.085 kb on - strand at 5752.085 kb on - strand at 5752.263 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,749,708 + Psyr_4842 0.87 -0.6 5,749,879 + +0.3 5,749,880 - +0.8 5,749,928 + -0.7 5,749,965 - +0.6 5,749,965 - +0.5 5,749,991 + +1.1 5,749,992 - -0.2 5,750,035 - +0.1 5,750,117 - Psyr_4843 0.20 -2.7 5,750,301 + Psyr_4843 0.58 -0.3 5,750,301 + Psyr_4843 0.58 -1.0 5,750,301 + Psyr_4843 0.58 +0.7 5,750,301 + Psyr_4843 0.58 -0.7 5,750,301 + Psyr_4843 0.58 -0.5 5,750,301 + Psyr_4843 0.58 +0.8 5,750,301 + Psyr_4843 0.58 -1.5 5,750,301 + Psyr_4843 0.58 -1.0 5,750,301 + Psyr_4843 0.58 -1.9 5,750,301 + Psyr_4843 0.58 -0.1 5,750,301 + Psyr_4843 0.58 -1.1 5,750,301 + Psyr_4843 0.58 -0.6 5,750,302 - Psyr_4843 0.58 -0.1 5,750,302 - Psyr_4843 0.58 -0.6 5,750,302 - Psyr_4843 0.58 -1.5 5,750,462 + -0.1 5,750,462 + -0.2 5,750,462 + -0.7 5,750,462 + +1.4 5,750,474 + +0.9 5,750,474 + -1.1 5,750,569 + +0.5 5,750,569 + +0.1 5,750,570 - -0.6 5,750,577 + +0.7 5,750,577 + -0.2 5,750,577 + -0.0 5,750,577 + +1.0 5,750,577 + +0.0 5,750,577 + -0.9 5,750,577 + -0.9 5,750,577 + -0.4 5,750,577 + -0.4 5,750,578 - -2.5 5,750,578 - -1.1 5,750,578 - -0.5 5,750,578 - -1.0 5,750,578 - +0.3 5,750,625 + -1.4 5,750,626 - +0.4 5,750,626 - +0.1 5,750,626 - -3.3 5,750,626 - -1.6 5,750,637 + -2.6 5,750,638 - -3.8 5,750,643 + -1.6 5,750,657 + +1.4 5,750,658 - -1.1 5,750,658 - -1.3 5,750,713 + Psyr_4844 0.11 -0.6 5,750,713 + Psyr_4844 0.11 -1.9 5,750,750 - Psyr_4844 0.16 -1.7 5,750,773 + Psyr_4844 0.20 -1.7 5,750,774 - Psyr_4844 0.20 -1.9 5,750,774 - Psyr_4844 0.20 -2.1 5,750,782 + Psyr_4844 0.21 -2.6 5,750,783 - Psyr_4844 0.21 +0.8 5,750,783 - Psyr_4844 0.21 -2.4 5,751,003 + Psyr_4844 0.55 -2.4 5,751,003 + Psyr_4844 0.55 +0.4 5,751,003 + Psyr_4844 0.55 -0.6 5,751,003 + Psyr_4844 0.55 -1.7 5,751,003 + Psyr_4844 0.55 -2.5 5,751,003 + Psyr_4844 0.55 -2.0 5,751,004 - Psyr_4844 0.55 -2.4 5,751,004 - Psyr_4844 0.55 -2.9 5,751,004 - Psyr_4844 0.55 -0.1 5,751,166 + Psyr_4844 0.79 -0.3 5,751,166 + Psyr_4844 0.79 -0.9 5,751,166 + Psyr_4844 0.79 -0.9 5,751,166 + Psyr_4844 0.79 -0.1 5,751,166 + Psyr_4844 0.79 +0.4 5,751,166 + Psyr_4844 0.79 -1.7 5,751,166 + Psyr_4844 0.79 -2.1 5,751,166 + Psyr_4844 0.79 -0.6 5,751,166 + Psyr_4844 0.79 -1.2 5,751,166 + Psyr_4844 0.79 -2.1 5,751,167 - Psyr_4844 0.80 -2.5 5,751,167 - Psyr_4844 0.80 -2.7 5,751,167 - Psyr_4844 0.80 -1.3 5,751,167 - Psyr_4844 0.80 -1.0 5,751,167 - Psyr_4844 0.80 -3.1 5,751,167 - Psyr_4844 0.80 -3.2 5,751,167 - Psyr_4844 0.80 -0.1 5,751,167 - Psyr_4844 0.80 +1.0 5,751,167 - Psyr_4844 0.80 -1.5 5,751,167 - Psyr_4844 0.80 -0.9 5,751,167 - Psyr_4844 0.80 -2.2 5,751,167 - Psyr_4844 0.80 +1.4 5,751,243 + -2.4 5,751,285 + -0.3 5,751,285 + -2.1 5,751,286 - +0.9 5,751,311 + -0.9 5,751,312 - +2.3 5,751,312 - +0.6 5,751,312 - -0.1 5,751,474 + +0.4 5,751,475 - Psyr_4845 0.38 +0.6 5,751,475 - Psyr_4845 0.38 +0.1 5,751,718 + +0.4 5,751,718 + +1.0 5,751,718 + -0.4 5,751,718 + -1.3 5,751,718 + -0.3 5,751,718 + -0.6 5,751,718 + +1.2 5,751,718 + -0.2 5,751,718 + +0.4 5,751,719 - +0.7 5,751,719 - +0.1 5,751,719 - -1.3 5,751,719 - -0.4 5,751,719 - +2.2 5,751,719 - +0.8 5,751,719 - +1.3 5,751,719 - +0.2 5,751,722 - +0.8 5,751,781 - +0.2 5,751,781 - +0.4 5,751,795 + +0.4 5,751,795 + +0.1 5,751,795 + -0.5 5,751,796 - -0.7 5,751,796 - -0.2 5,751,796 - -1.0 5,751,796 - +0.8 5,751,838 + -0.3 5,751,838 + -0.7 5,751,839 - +0.1 5,751,962 + +0.3 5,751,962 + +1.4 5,751,964 + +0.1 5,752,041 + -0.1 5,752,041 + +0.3 5,752,041 + +0.3 5,752,041 + -0.5 5,752,041 + +1.2 5,752,042 - -0.1 5,752,042 - -0.5 5,752,042 - +0.7 5,752,042 - +0.6 5,752,042 - +0.7 5,752,042 - -0.5 5,752,042 - -1.6 5,752,085 - -0.2 5,752,085 - -0.1 5,752,085 - +1.4 5,752,263 + -0.5
Or see this region's nucleotide sequence