Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4577

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
5,438,762	+		Psyr_4575	0.84	+0.5
5,438,762	+		Psyr_4575	0.84	+0.2
5,438,762	+		Psyr_4575	0.84	-1.5
5,438,762	+		Psyr_4575	0.84	+0.5
5,438,763	-		Psyr_4575	0.84	+0.3
5,438,763	-		Psyr_4575	0.84	-0.5
5,438,763	-		Psyr_4575	0.84	+0.3
5,438,777	+		Psyr_4575	0.85	-0.0
5,438,778	-		Psyr_4575	0.86	+1.8
5,438,778	-		Psyr_4575	0.86	+0.5
5,438,778	-		Psyr_4575	0.86	-0.3
5,438,778	-		Psyr_4575	0.86	+0.5
5,438,786	+		Psyr_4575	0.87	-0.1
5,438,786	+		Psyr_4575	0.87	-0.2
5,438,786	+		Psyr_4575	0.87	-0.3
5,438,786	+		Psyr_4575	0.87	-1.7
5,438,786	+		Psyr_4575	0.87	+0.3
5,438,787	-		Psyr_4575	0.87	-0.2
5,438,787	-		Psyr_4575	0.87	-0.1
5,438,817	-				+0.0
5,438,817	-				+0.9
5,438,828	+				+0.8
5,438,828	+				+0.6
5,438,829	-				+0.5
5,438,829	-				-1.7
5,438,829	-				-0.8
5,438,907	+				+0.6
5,438,907	+				-0.3
5,438,907	+				+0.0
5,438,907	+				-0.4
5,438,907	+				+0.6
5,438,907	+				-0.0
5,438,907	+				-0.7
5,438,907	+				+0.0
5,438,907	+				-2.2
5,438,907	+				-1.0
5,438,907	+				-0.5
5,438,908	-				-1.1
5,438,908	-				+0.2
5,438,908	-				-0.9
5,438,908	-				+0.7
5,438,908	-				-0.7
5,438,908	-				+0.7
5,438,908	-				+2.6
5,438,908	-				-1.7
5,438,908	-				-0.1
5,438,908	-				-1.4
5,438,908	-				+1.1
5,438,910	-				-0.2
5,438,971	+				-0.1
5,438,972	-				+1.4
5,438,972	-				-0.0
5,439,039	+				+0.8
5,439,039	+				+0.2
5,439,039	+				+0.0
5,439,039	+				-1.9
5,439,039	+				-0.4
5,439,040	-				+2.5
5,439,040	-				-0.5
5,439,040	-				-0.1
5,439,069	+				+0.4
5,439,070	-				-0.5
5,439,113	-				+0.2
5,439,113	-				+2.6
5,439,211	+		Psyr_4576	0.18	+0.4
5,439,211	+		Psyr_4576	0.18	-0.1
5,439,211	+		Psyr_4576	0.18	+0.1
5,439,211	+		Psyr_4576	0.18	-0.6
5,439,211	+		Psyr_4576	0.18	-0.0
5,439,211	+		Psyr_4576	0.18	+0.2
5,439,211	+		Psyr_4576	0.18	+0.7
5,439,212	-		Psyr_4576	0.18	-0.3
5,439,212	-		Psyr_4576	0.18	-1.3
5,439,212	-		Psyr_4576	0.18	-1.7
5,439,212	-		Psyr_4576	0.18	-0.7
5,439,230	-		Psyr_4576	0.22	-0.8
5,439,445	-		Psyr_4576	0.73	+0.5
5,439,445	-		Psyr_4576	0.73	-1.9
5,439,575	-				+1.5
5,439,575	-				+1.2
5,439,575	-				+1.8
5,439,594	+				-0.0
5,439,661	+				+0.2
5,439,661	+				-1.7
5,439,661	+				-0.1
5,439,661	+				-0.2
5,439,662	-				-0.0
5,439,662	-				+0.4
5,439,662	-				+0.5
5,439,662	-				+0.0
5,439,662	-				+0.4
5,439,662	-				-0.2
5,439,662	-				-0.2
5,439,662	-				+1.3
5,439,669	+				+0.9
5,439,669	+				+1.3
5,439,670	-				-0.3
5,439,670	-				-0.5
5,439,670	-				-0.1
5,439,670	-				+1.0
5,439,711	-				+1.5
5,439,714	+				-0.2
5,439,714	+				+1.1
5,439,714	+				-1.0
5,439,715	-				-2.3
5,439,715	-				+0.3
5,439,715	-				+0.2
5,439,715	-				-0.3
5,439,715	-				+1.9
5,439,715	-				-0.1
5,439,715	-				-2.4
5,439,715	-				-0.8
5,439,715	-				-1.1
5,439,715	-				+0.1
5,439,716	+				+0.1
5,439,716	+				+0.4
5,439,716	+				+0.0
5,439,716	+				+0.6
5,439,716	+				-1.2
5,439,716	+				-0.5
5,439,716	+				-0.0
5,439,717	-				-0.4
5,439,717	-				+0.9
5,439,717	-				+0.1
5,439,717	-				-0.3
5,439,717	-				+0.1
5,439,717	-				+0.1
5,439,717	-				+0.3
5,439,717	-				+0.4
5,439,717	-				-0.9
5,439,717	-				-0.5
5,439,717	-				-0.3
5,439,720	+				+0.2
5,439,720	+				+0.2
5,439,721	-				+1.1
5,439,736	-				-0.1
5,439,742	+				+1.1
5,439,742	+				+0.3
5,439,742	+				+1.2
5,439,743	-				+0.3
5,439,743	-				+0.4
5,439,769	+				+1.2
5,439,769	+				+0.1
5,439,952	-		Psyr_4577	0.30	-0.3
5,440,068	+		Psyr_4577	0.48	-0.0
5,440,069	-		Psyr_4577	0.48	+1.2
5,440,069	-		Psyr_4577	0.48	-0.3
5,440,069	-		Psyr_4577	0.48	+0.7
5,440,114	-		Psyr_4577	0.55	+0.1
5,440,151	+		Psyr_4577	0.61	-0.2
5,440,151	+		Psyr_4577	0.61	+1.5
5,440,151	+		Psyr_4577	0.61	-0.9
5,440,152	-		Psyr_4577	0.61	+0.8
5,440,152	-		Psyr_4577	0.61	+0.3
5,440,413	-				-0.8
5,440,413	-				-0.2
5,440,413	-				+0.7
5,440,488	+		Psyr_4578	0.10	-0.9
5,440,488	+		Psyr_4578	0.10	+0.8
5,440,488	+		Psyr_4578	0.10	-0.1
5,440,778	+		Psyr_4578	0.52	-0.0
5,440,779	-		Psyr_4578	0.52	-1.1
5,440,779	-		Psyr_4578	0.52	-1.7
5,440,779	-		Psyr_4578	0.52	+0.6
5,440,799	+		Psyr_4578	0.55	+0.0
5,440,799	+		Psyr_4578	0.55	+0.1
5,440,799	+		Psyr_4578	0.55	+0.3
5,440,800	-		Psyr_4578	0.55	+0.9
5,440,800	-		Psyr_4578	0.55	-2.0
5,440,801	+		Psyr_4578	0.55	-0.3
5,440,801	+		Psyr_4578	0.55	+0.3
5,440,836	+		Psyr_4578	0.60	-0.2
5,440,837	-		Psyr_4578	0.61	-0.3
5,440,837	-		Psyr_4578	0.61	-0.3
5,441,087	+				+0.7
5,441,087	+				+1.3
5,441,087	+				+0.9
5,441,087	+				-1.0
5,441,087	+				+0.3
5,441,087	+				+1.0
5,441,087	+				+0.4
5,441,087	+				+0.2
5,441,087	+				-0.0
5,441,087	+				-1.4
5,441,087	+				+0.3
5,441,087	+				-0.1
5,441,087	+				-1.2
5,441,087	+				+2.3
5,441,087	+				+0.2
5,441,087	+				-0.9
5,441,087	+				+0.2
5,441,087	+				-1.0
5,441,087	+				+0.1
5,441,087	+				-0.3
5,441,087	+				+0.4
5,441,087	+				+0.5
5,441,087	+				+0.3
5,441,087	+				+0.3
5,441,087	+				-0.5
5,441,087	+				-0.9
5,441,087	+				-0.3
5,441,087	+				-2.0
5,441,087	+				+1.1
5,441,087	+				-0.5
5,441,087	+				-1.9
5,441,087	+				-0.9
5,441,088	-				-1.0
5,441,088	-				-0.3
5,441,088	-				-0.1
5,441,088	-				+0.3
5,441,088	-				-0.3
5,441,088	-				-1.0
5,441,088	-				+0.7
5,441,088	-				-1.2
5,441,088	-				-1.0
5,441,088	-				+0.4
5,441,088	-				-0.4
5,441,088	-				+0.7
5,441,088	-				-0.1
5,441,088	-				-0.9
5,441,088	-				+0.7
5,441,088	-				-0.3
5,441,088	-				+0.1
5,441,166	+				+0.1
5,441,167	-				-0.4
5,441,257	+		Psyr_4579	0.13	-2.4
5,441,360	+		Psyr_4579	0.26	-2.5
5,441,360	+		Psyr_4579	0.26	-2.9
5,441,384	+		Psyr_4579	0.29	-3.9
5,441,384	+		Psyr_4579	0.29	-2.2
5,441,384	+		Psyr_4579	0.29	-1.3
5,441,384	+		Psyr_4579	0.29	-1.0
5,441,385	-		Psyr_4579	0.29	-2.5
5,441,385	-		Psyr_4579	0.29	-2.1
5,441,385	-		Psyr_4579	0.29	-0.5