Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1952 and Psyr_1953 overlap by 4 nucleotides Psyr_1953 and Psyr_1954 overlap by 4 nucleotides Psyr_1954 and Psyr_1955 overlap by 4 nucleotides Psyr_1955 and Psyr_1956 are separated by 296 nucleotides
Psyr_1952: Psyr_1952 - hypothetical protein, at 2,236,935 to 2,237,501
_1952
Psyr_1953: Psyr_1953 - conserved hypothetical protein, at 2,237,498 to 2,237,830
_1953
Psyr_1954: Psyr_1954 - conserved hypothetical protein, at 2,237,827 to 2,238,372
_1954
Psyr_1955: Psyr_1955 - Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix, at 2,238,369 to 2,239,592
_1955
Psyr_1956: Psyr_1956 - pyoverdine biosynthesis regulatory gene, putative, at 2,239,889 to 2,240,866
_1956
Position (kb)
2238
2239
2240 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2237.443 kb on + strand, within Psyr_1952 at 2237.444 kb on - strand, within Psyr_1952 at 2237.444 kb on - strand, within Psyr_1952 at 2237.444 kb on - strand, within Psyr_1952 at 2237.444 kb on - strand, within Psyr_1952 at 2237.480 kb on + strand at 2237.481 kb on - strand at 2237.481 kb on - strand at 2237.481 kb on - strand at 2237.566 kb on - strand, within Psyr_1953 at 2237.566 kb on - strand, within Psyr_1953 at 2237.566 kb on - strand, within Psyr_1953 at 2238.056 kb on + strand at 2238.057 kb on - strand, within Psyr_1954 at 2238.495 kb on - strand, within Psyr_1955 at 2238.538 kb on - strand, within Psyr_1955 at 2238.915 kb on - strand, within Psyr_1955 at 2239.150 kb on + strand, within Psyr_1955 at 2239.273 kb on + strand, within Psyr_1955 at 2239.273 kb on + strand, within Psyr_1955 at 2239.328 kb on - strand, within Psyr_1955 at 2239.328 kb on - strand, within Psyr_1955 at 2239.665 kb on + strand at 2239.666 kb on - strand at 2239.666 kb on - strand at 2239.680 kb on - strand at 2239.815 kb on - strand at 2239.815 kb on - strand at 2240.030 kb on + strand, within Psyr_1956 at 2240.030 kb on + strand, within Psyr_1956 at 2240.030 kb on + strand, within Psyr_1956 at 2240.031 kb on - strand, within Psyr_1956 at 2240.126 kb on + strand, within Psyr_1956 at 2240.127 kb on - strand, within Psyr_1956 at 2240.171 kb on + strand, within Psyr_1956 at 2240.172 kb on - strand, within Psyr_1956 at 2240.262 kb on - strand, within Psyr_1956 at 2240.375 kb on + strand, within Psyr_1956 at 2240.375 kb on + strand, within Psyr_1956 at 2240.375 kb on + strand, within Psyr_1956 at 2240.376 kb on - strand, within Psyr_1956 at 2240.376 kb on - strand, within Psyr_1956 at 2240.383 kb on + strand, within Psyr_1956 at 2240.384 kb on - strand, within Psyr_1956 at 2240.388 kb on - strand, within Psyr_1956 at 2240.388 kb on - strand, within Psyr_1956 at 2240.422 kb on - strand, within Psyr_1956
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 2,237,443 + Psyr_1952 0.90 -0.7 2,237,444 - Psyr_1952 0.90 -1.1 2,237,444 - Psyr_1952 0.90 +0.9 2,237,444 - Psyr_1952 0.90 -1.9 2,237,444 - Psyr_1952 0.90 -2.7 2,237,480 + +0.2 2,237,481 - -0.3 2,237,481 - +1.7 2,237,481 - -0.0 2,237,566 - Psyr_1953 0.20 +1.7 2,237,566 - Psyr_1953 0.20 -0.9 2,237,566 - Psyr_1953 0.20 +0.4 2,238,056 + -0.3 2,238,057 - Psyr_1954 0.42 -1.3 2,238,495 - Psyr_1955 0.10 +0.5 2,238,538 - Psyr_1955 0.14 -0.7 2,238,915 - Psyr_1955 0.45 -1.9 2,239,150 + Psyr_1955 0.64 -0.2 2,239,273 + Psyr_1955 0.74 -2.0 2,239,273 + Psyr_1955 0.74 -2.5 2,239,328 - Psyr_1955 0.78 +0.7 2,239,328 - Psyr_1955 0.78 -3.0 2,239,665 + -2.8 2,239,666 - +0.1 2,239,666 - -0.7 2,239,680 - -0.9 2,239,815 - -0.6 2,239,815 - -0.2 2,240,030 + Psyr_1956 0.14 +0.7 2,240,030 + Psyr_1956 0.14 +0.4 2,240,030 + Psyr_1956 0.14 -0.8 2,240,031 - Psyr_1956 0.15 -1.2 2,240,126 + Psyr_1956 0.24 +0.7 2,240,127 - Psyr_1956 0.24 -0.1 2,240,171 + Psyr_1956 0.29 -0.5 2,240,172 - Psyr_1956 0.29 +0.4 2,240,262 - Psyr_1956 0.38 -0.2 2,240,375 + Psyr_1956 0.50 -0.1 2,240,375 + Psyr_1956 0.50 -0.3 2,240,375 + Psyr_1956 0.50 -1.2 2,240,376 - Psyr_1956 0.50 +0.4 2,240,376 - Psyr_1956 0.50 -0.6 2,240,383 + Psyr_1956 0.51 +1.2 2,240,384 - Psyr_1956 0.51 -0.3 2,240,388 - Psyr_1956 0.51 -0.3 2,240,388 - Psyr_1956 0.51 -0.1 2,240,422 - Psyr_1956 0.54 +0.2
Or see this region's nucleotide sequence