Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1341

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,518,417	+		Psyr_1340	0.25	+1.3
1,518,417	+		Psyr_1340	0.25	-2.2
1,518,418	-		Psyr_1340	0.25	+0.2
1,518,418	-		Psyr_1340	0.25	-1.3
1,518,487	+		Psyr_1340	0.31	+0.2
1,518,487	+		Psyr_1340	0.31	-0.3
1,518,488	-		Psyr_1340	0.31	-0.6
1,518,488	-		Psyr_1340	0.31	+0.0
1,518,488	-		Psyr_1340	0.31	-0.2
1,518,670	+		Psyr_1340	0.47	+1.3
1,518,671	-		Psyr_1340	0.47	-0.8
1,518,671	-		Psyr_1340	0.47	-1.2
1,518,671	-		Psyr_1340	0.47	-1.1
1,518,683	-		Psyr_1340	0.48	+0.0
1,518,683	-		Psyr_1340	0.48	-0.1
1,518,683	-		Psyr_1340	0.48	+0.7
1,518,916	+		Psyr_1340	0.67	-0.4
1,518,916	+		Psyr_1340	0.67	-0.9
1,518,916	+		Psyr_1340	0.67	-1.7
1,518,917	-		Psyr_1340	0.67	-0.8
1,518,917	-		Psyr_1340	0.67	-0.1
1,518,917	-		Psyr_1340	0.67	-0.2
1,518,917	-		Psyr_1340	0.67	-0.6
1,518,917	-		Psyr_1340	0.67	-0.7
1,518,917	-		Psyr_1340	0.67	+1.3
1,518,925	+		Psyr_1340	0.68	+0.2
1,519,023	+		Psyr_1340	0.76	-0.8
1,519,023	+		Psyr_1340	0.76	-0.3
1,519,023	+		Psyr_1340	0.76	+0.4
1,519,023	+		Psyr_1340	0.76	+0.9
1,519,023	+		Psyr_1340	0.76	-0.8
1,519,023	+		Psyr_1340	0.76	-0.6
1,519,023	+		Psyr_1340	0.76	-0.7
1,519,023	+		Psyr_1340	0.76	-0.5
1,519,024	-		Psyr_1340	0.76	+0.5
1,519,024	-		Psyr_1340	0.76	-2.2
1,519,024	-		Psyr_1340	0.76	-0.2
1,519,024	-		Psyr_1340	0.76	+0.3
1,519,024	-		Psyr_1340	0.76	+1.4
1,519,024	-		Psyr_1340	0.76	+1.3
1,519,024	-		Psyr_1340	0.76	-1.1
1,519,024	-		Psyr_1340	0.76	+0.6
1,519,024	-		Psyr_1340	0.76	+0.2
1,519,024	-		Psyr_1340	0.76	-0.1
1,519,357	-				-0.3
1,519,362	+				-1.1
1,519,362	+				-0.3
1,519,362	+				+0.3
1,519,362	+				-1.6
1,519,363	-				+0.9
1,519,363	-				-0.1
1,519,813	+		Psyr_1341	0.17	-0.6
1,519,813	+		Psyr_1341	0.17	-0.4
1,519,845	-		Psyr_1341	0.18	-0.4
1,519,930	+		Psyr_1341	0.21	-2.5
1,520,068	+		Psyr_1341	0.26	+0.9
1,520,227	+		Psyr_1341	0.32	-1.9
1,520,227	+		Psyr_1341	0.32	-3.9
1,520,227	+		Psyr_1341	0.32	-1.6
1,520,227	+		Psyr_1341	0.32	-2.1
1,520,228	-		Psyr_1341	0.32	-1.3
1,520,308	+		Psyr_1341	0.35	-2.5
1,520,308	+		Psyr_1341	0.35	-2.3
1,520,308	+		Psyr_1341	0.35	-1.4
1,520,308	+		Psyr_1341	0.35	-1.5
1,520,308	+		Psyr_1341	0.35	-2.9
1,520,308	+		Psyr_1341	0.35	-2.0
1,520,308	+		Psyr_1341	0.35	-3.1
1,520,308	+		Psyr_1341	0.35	-0.6
1,520,308	+		Psyr_1341	0.35	-3.4
1,520,309	-		Psyr_1341	0.35	-0.8
1,520,309	-		Psyr_1341	0.35	-2.1
1,520,309	-		Psyr_1341	0.35	-3.5
1,520,309	-		Psyr_1341	0.35	-2.1
1,520,309	-		Psyr_1341	0.35	-0.2
1,520,309	-		Psyr_1341	0.35	-1.0
1,520,309	-		Psyr_1341	0.35	-2.1
1,520,315	-		Psyr_1341	0.35	-3.4
1,520,315	-		Psyr_1341	0.35	-3.1
1,520,315	-		Psyr_1341	0.35	-1.2
1,520,435	+		Psyr_1341	0.40	-1.2
1,520,435	+		Psyr_1341	0.40	-2.4
1,520,436	-		Psyr_1341	0.40	-2.2
1,520,436	-		Psyr_1341	0.40	-1.7
1,520,557	+		Psyr_1341	0.44	-2.7
1,520,557	+		Psyr_1341	0.44	-3.1
1,520,557	+		Psyr_1341	0.44	-1.2
1,520,557	+		Psyr_1341	0.44	-2.6
1,520,558	-		Psyr_1341	0.44	-2.5
1,520,558	-		Psyr_1341	0.44	-3.8
1,520,558	-		Psyr_1341	0.44	-3.1
1,520,629	+		Psyr_1341	0.47	-4.0
1,520,630	-		Psyr_1341	0.47	-1.6
1,520,630	-		Psyr_1341	0.47	+0.3
1,520,630	-		Psyr_1341	0.47	+0.4
1,520,630	-		Psyr_1341	0.47	-0.7
1,520,630	-		Psyr_1341	0.47	-0.8
1,520,683	+		Psyr_1341	0.49	-2.6
1,520,683	+		Psyr_1341	0.49	-3.0
1,520,683	+		Psyr_1341	0.49	-0.6
1,520,684	-		Psyr_1341	0.49	-1.5
1,520,684	-		Psyr_1341	0.49	-2.7
1,520,684	-		Psyr_1341	0.49	-1.2
1,520,684	-		Psyr_1341	0.49	-1.6
1,520,740	+		Psyr_1341	0.51	-2.3
1,520,832	-		Psyr_1341	0.55	-2.9
1,520,837	+		Psyr_1341	0.55	-3.4
1,520,904	+		Psyr_1341	0.57	-2.1
1,520,904	+		Psyr_1341	0.57	-2.9
1,520,904	+		Psyr_1341	0.57	-2.8
1,520,905	-		Psyr_1341	0.57	-2.4
1,520,905	-		Psyr_1341	0.57	-3.1
1,520,905	-		Psyr_1341	0.57	-3.0
1,520,913	+		Psyr_1341	0.58	-2.2
1,520,913	+		Psyr_1341	0.58	-3.0
1,520,914	-		Psyr_1341	0.58	-1.6
1,520,997	+		Psyr_1341	0.61	-2.1
1,520,997	+		Psyr_1341	0.61	-2.8
1,520,997	+		Psyr_1341	0.61	-0.8
1,520,997	+		Psyr_1341	0.61	-1.6
1,520,997	+		Psyr_1341	0.61	-1.4
1,520,997	+		Psyr_1341	0.61	-3.3
1,520,997	+		Psyr_1341	0.61	-1.1
1,520,997	+		Psyr_1341	0.61	-2.8
1,520,997	+		Psyr_1341	0.61	-2.4
1,520,997	+		Psyr_1341	0.61	-2.7
1,520,997	+		Psyr_1341	0.61	-2.9
1,520,997	+		Psyr_1341	0.61	-1.6
1,520,997	+		Psyr_1341	0.61	-1.8
1,520,997	+		Psyr_1341	0.61	-2.2
1,520,997	+		Psyr_1341	0.61	-2.1
1,520,997	+		Psyr_1341	0.61	-3.3
1,520,997	+		Psyr_1341	0.61	-2.8
1,520,997	+		Psyr_1341	0.61	-3.1
1,520,997	+		Psyr_1341	0.61	-1.8
1,520,997	+		Psyr_1341	0.61	-0.6
1,520,998	-		Psyr_1341	0.61	+0.5
1,520,998	-		Psyr_1341	0.61	-0.5
1,520,998	-		Psyr_1341	0.61	-0.5
1,520,998	-		Psyr_1341	0.61	-2.4
1,520,998	-		Psyr_1341	0.61	-1.1
1,520,998	-		Psyr_1341	0.61	-1.7
1,520,998	-		Psyr_1341	0.61	+1.9
1,520,998	-		Psyr_1341	0.61	-0.8
1,520,998	-		Psyr_1341	0.61	-2.1
1,520,998	-		Psyr_1341	0.61	-1.4
1,520,998	-		Psyr_1341	0.61	-2.2
1,520,998	-		Psyr_1341	0.61	-3.1
1,520,998	-		Psyr_1341	0.61	-0.6
1,520,998	-		Psyr_1341	0.61	-1.2
1,520,998	-		Psyr_1341	0.61	-1.1
1,520,998	-				-1.1
1,520,998	-		Psyr_1341	0.61	-2.4
1,520,998	-		Psyr_1341	0.61	-1.6
1,520,998	-		Psyr_1341	0.61	-2.1
1,520,998	-		Psyr_1341	0.61	-1.9
1,520,998	-		Psyr_1341	0.61	-1.4
1,520,998	-		Psyr_1341	0.61	-1.3
1,520,998	-		Psyr_1341	0.61	-1.8
1,520,998	-		Psyr_1341	0.61	-0.1
1,520,999	+		Psyr_1341	0.61	-2.8
1,520,999	+		Psyr_1341	0.61	-3.1
1,520,999	+		Psyr_1341	0.61	-1.6
1,520,999	+		Psyr_1341	0.61	-1.3
1,521,001	+		Psyr_1341	0.61	-0.8
1,521,001	+		Psyr_1341	0.61	-2.1
1,521,001	+		Psyr_1341	0.61	-3.0
1,521,001	+		Psyr_1341	0.61	-0.1
1,521,002	-		Psyr_1341	0.61	-1.6
1,521,002	-		Psyr_1341	0.61	-2.5
1,521,002	-		Psyr_1341	0.61	+0.9
1,521,002	-		Psyr_1341	0.61	-2.1
1,521,442	+		Psyr_1341	0.77	-2.2
1,521,522	-		Psyr_1341	0.80	-1.9
1,521,522	-		Psyr_1341	0.80	+0.4
1,521,522	-		Psyr_1341	0.80	-1.1
1,522,044	+				-2.5
1,522,045	-				-0.9
1,522,045	-				-2.8
1,522,045	-				-0.1
1,522,506	+		Psyr_1342	0.49	+0.6
1,522,507	-		Psyr_1342	0.49	+0.9
1,522,507	-		Psyr_1342	0.49	-0.4
1,522,507	-		Psyr_1342	0.49	-0.2
1,522,507	-		Psyr_1342	0.49	-1.1
1,522,507	-		Psyr_1342	0.49	-0.3
1,522,719	+		Psyr_1342	0.76	+1.1
1,522,719	+		Psyr_1342	0.76	-3.1
1,522,719	+		Psyr_1342	0.76	-0.4
1,522,720	-		Psyr_1342	0.77	+0.9
1,522,720	-		Psyr_1342	0.77	-0.4
1,522,720	-		Psyr_1342	0.77	-0.9
1,522,720	-		Psyr_1342	0.77	-0.6
1,522,720	-		Psyr_1342	0.77	-0.6
1,522,759	+		Psyr_1342	0.81	-2.6
1,522,759	+		Psyr_1342	0.81	-1.3
1,522,759	+		Psyr_1342	0.81	-0.4
1,522,759	+		Psyr_1342	0.81	+1.4
1,522,759	+		Psyr_1342	0.81	+0.7
1,522,759	+		Psyr_1342	0.81	-1.4
1,522,759	+		Psyr_1342	0.81	-1.1
1,522,759	+		Psyr_1342	0.81	-1.4
1,522,759	+		Psyr_1342	0.81	-0.6
1,522,759	+		Psyr_1342	0.81	-0.6
1,522,760	+		Psyr_1342	0.82	+0.2
1,522,760	-		Psyr_1342	0.82	+1.0
1,522,760	-		Psyr_1342	0.82	+0.5
1,522,760	-		Psyr_1342	0.82	+0.1
1,522,760	-		Psyr_1342	0.82	-0.1
1,522,761	+		Psyr_1342	0.82	-0.3
1,522,761	+		Psyr_1342	0.82	+0.7
1,522,761	+		Psyr_1342	0.82	+1.3
1,522,761	+		Psyr_1342	0.82	+0.9
1,522,761	+		Psyr_1342	0.82	+1.2
1,522,761	+		Psyr_1342	0.82	-2.5
1,522,761	+		Psyr_1342	0.82	+0.7
1,522,761	+		Psyr_1342	0.82	+0.5
1,522,761	+		Psyr_1342	0.82	-2.2
1,522,761	+		Psyr_1342	0.82	+1.1
1,522,761	+		Psyr_1342	0.82	+0.2
1,522,761	+		Psyr_1342	0.82	-0.0
1,522,761	+		Psyr_1342	0.82	-0.9
1,522,761	+		Psyr_1342	0.82	+1.4
1,522,761	+		Psyr_1342	0.82	+0.1
1,522,761	+		Psyr_1342	0.82	-0.3
1,522,761	+		Psyr_1342	0.82	-0.6
1,522,761	+		Psyr_1342	0.82	-0.1
1,522,762	-		Psyr_1342	0.82	+1.3
1,522,762	-		Psyr_1342	0.82	-0.5
1,522,762	-		Psyr_1342	0.82	+0.2
1,522,762	-		Psyr_1342	0.82	+0.3
1,522,762	-		Psyr_1342	0.82	-0.1
1,522,762	-		Psyr_1342	0.82	+0.1
1,522,762	-		Psyr_1342	0.82	-1.1
1,522,762	-		Psyr_1342	0.82	+0.8
1,522,762	-		Psyr_1342	0.82	-0.1
1,522,762	-		Psyr_1342	0.82	-1.9
1,522,762	-		Psyr_1342	0.82	-2.5
1,522,762	-		Psyr_1342	0.82	+0.6
1,522,812	+		Psyr_1342	0.88	-0.2
1,522,813	-		Psyr_1342	0.88	+1.3
1,522,903	+				-0.4
1,522,994	+				-0.5
1,522,994	+				-1.4
1,522,994	+				+0.3
1,522,994	+				-1.2
1,522,994	+				-0.7
1,522,994	+				+0.2
1,522,995	-				+1.5
1,522,995	-				-0.5
1,522,995	-				+1.7
1,522,995	-				-0.5
1,522,995	-				-0.6
1,522,995	-				+0.4
1,522,995	-				+0.4
1,522,995	-				-2.6