Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0933

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,065,839	+		Psyr_0932	0.70	-0.3
1,065,839	+		Psyr_0932	0.70	+0.2
1,065,839	+		Psyr_0932	0.70	+0.1
1,065,839	+		Psyr_0932	0.70	-1.9
1,065,839	+		Psyr_0932	0.70	+0.2
1,065,839	+		Psyr_0932	0.70	-0.5
1,065,839	+		Psyr_0932	0.70	+0.1
1,065,839	+		Psyr_0932	0.70	-2.8
1,065,839	+		Psyr_0932	0.70	-0.1
1,065,839	+		Psyr_0932	0.70	-0.0
1,065,839	+		Psyr_0932	0.70	+1.0
1,065,839	+		Psyr_0932	0.70	+1.0
1,065,840	-		Psyr_0932	0.70	+0.0
1,065,840	-		Psyr_0932	0.70	+0.2
1,065,840	-		Psyr_0932	0.70	-0.3
1,065,840	-		Psyr_0932	0.70	-1.9
1,065,840	-		Psyr_0932	0.70	-0.5
1,065,840	-		Psyr_0932	0.70	-0.1
1,065,840	-		Psyr_0932	0.70	+0.3
1,065,840	-		Psyr_0932	0.70	-1.5
1,065,840	-		Psyr_0932	0.70	+0.2
1,065,840	-		Psyr_0932	0.70	-0.1
1,065,844	+		Psyr_0932	0.71	-0.2
1,065,844	+		Psyr_0932	0.71	-0.4
1,065,844	+		Psyr_0932	0.71	-0.0
1,065,844	+		Psyr_0932	0.71	-0.1
1,065,845	-		Psyr_0932	0.71	+1.1
1,065,962	+		Psyr_0932	0.84	-1.1
1,065,962	+		Psyr_0932	0.84	+1.8
1,065,963	-		Psyr_0932	0.84	-1.8
1,066,025	-				+0.3
1,066,032	+				-0.1
1,066,032	+				+0.1
1,066,032	+				-2.7
1,066,032	+				+0.8
1,066,032	+				+0.9
1,066,032	+				-0.1
1,066,032	+				-2.8
1,066,033	-				+0.4
1,066,033	-				-0.6
1,066,033	-				+0.9
1,066,033	-				+0.7
1,066,033	-				-0.7
1,066,033	-				-0.1
1,066,036	+				+0.8
1,066,036	+				+1.6
1,066,036	+				+0.2
1,066,036	+				-0.4
1,066,036	+				-0.2
1,066,036	+				+1.5
1,066,036	+				-0.4
1,066,036	+				-2.0
1,066,036	+				-0.3
1,066,036	+				+1.3
1,066,037	-				-1.4
1,066,037	-				+1.6
1,066,037	-				-0.2
1,066,037	-				+3.4
1,066,037	-				+0.5
1,066,077	+				-1.6
1,066,181	+				+0.4
1,066,182	-				-0.1
1,066,185	+				-0.4
1,066,185	+				+0.1
1,066,186	-				-1.1
1,066,186	-				+0.3
1,066,186	-				+0.2
1,066,186	-				+0.1
1,066,186	-				-0.1
1,066,186	-				+0.4
1,066,186	-				+0.5
1,066,262	+				+0.1
1,066,275	+				-0.3
1,066,275	+				-0.0
1,066,305	+				-0.1
1,066,305	+				+1.6
1,066,306	-				-0.0
1,066,306	-				+0.1
1,066,345	-				+0.5
1,066,382	+				-0.2
1,066,397	-				-0.9
1,066,418	+				-0.5
1,066,419	-				-0.2
1,066,419	-				+0.2
1,066,419	-				-1.5
1,066,460	+				+0.2
1,066,460	+				-0.5
1,066,460	+				-0.1
1,066,461	-				+0.5
1,066,461	-				-0.8
1,066,461	-				+0.1
1,066,461	-				-1.6
1,066,461	-				+0.8
1,066,461	-				-0.5
1,066,464	+				-0.7
1,066,464	+				+0.2
1,066,465	-				+1.4
1,066,465	-				-0.2
1,066,465	-				+0.5
1,066,465	-				-0.6
1,066,465	-				+1.1
1,066,465	-				+1.3
1,066,465	-				-2.1
1,066,468	-				-1.2
1,066,490	+				-0.1
1,066,491	-				-0.3
1,066,545	+				-0.8
1,066,546	-				+1.1
1,066,546	-				+0.4
1,066,560	+				-0.1
1,066,625	+				-0.4
1,066,626	-				+0.2
1,066,626	-				+0.3
1,066,630	-				+0.7
1,066,659	+				-0.7
1,066,660	-				-1.4
1,066,668	-				+0.1
1,066,668	-				+0.2
1,066,668	-				-0.6
1,066,709	+				+0.5
1,066,709	+				-0.6
1,066,709	+				-0.3
1,066,710	-				-0.9
1,066,710	-				-0.8
1,066,739	+				+1.1
1,066,739	+				+1.1
1,066,793	+				-0.2
1,066,793	+				+1.1
1,066,793	+				-0.6
1,066,793	+				+0.4
1,066,793	+				+2.1
1,066,793	+				+1.0
1,066,793	+				-0.0
1,066,793	+				+0.3
1,066,793	+				-0.7
1,066,793	+				+1.1
1,066,794	-				-0.2
1,066,794	-				-1.0
1,066,794	-				-0.7
1,066,794	-				+0.2
1,066,794	-				+0.8
1,066,794	-				-0.6
1,066,835	+				-0.6
1,066,835	+				-0.9
1,066,835	+				-0.3
1,066,836	-				-0.5
1,066,836	-				+0.5
1,066,895	+				-0.6
1,066,895	+				-0.2
1,066,895	+				+0.3
1,066,895	+				-3.0
1,066,896	-				-0.7
1,066,925	-				-0.3
1,066,953	+				+1.1
1,066,953	+				-0.3
1,066,954	-				-0.5
1,066,954	-				-0.5
1,066,954	-				+1.4
1,066,954	-				+0.4
1,066,954	-				+0.5
1,066,954	-				-0.4
1,067,042	+		Psyr_0933	0.12	-1.0
1,067,043	-		Psyr_0933	0.12	+0.1
1,067,043	-		Psyr_0933	0.12	+1.1
1,067,087	+		Psyr_0933	0.14	-1.3
1,067,088	-		Psyr_0933	0.14	-0.2
1,067,093	+		Psyr_0933	0.15	-1.0
1,067,093	+		Psyr_0933	0.15	-0.8
1,067,128	-		Psyr_0933	0.17	+0.0
1,067,268	+		Psyr_0933	0.25	-1.2
1,067,268	+		Psyr_0933	0.25	+0.1
1,067,269	-		Psyr_0933	0.25	-0.6
1,067,287	+		Psyr_0933	0.26	-0.5
1,067,287	+		Psyr_0933	0.26	+0.2
1,067,287	+		Psyr_0933	0.26	-1.0
1,067,288	-		Psyr_0933	0.26	+0.3
1,067,317	+		Psyr_0933	0.27	-3.1
1,067,317	+		Psyr_0933	0.27	+1.1
1,067,317	+		Psyr_0933	0.27	-0.2
1,067,318	-		Psyr_0933	0.27	-0.5
1,067,318	-		Psyr_0933	0.27	+0.6
1,067,318	-		Psyr_0933	0.27	+1.2
1,067,318	-		Psyr_0933	0.27	-0.0
1,067,318	-		Psyr_0933	0.27	-0.5
1,067,318	-		Psyr_0933	0.27	+0.7
1,067,349	+		Psyr_0933	0.29	-0.6
1,067,349	+		Psyr_0933	0.29	-1.9
1,067,349	+		Psyr_0933	0.29	+0.1
1,067,349	+		Psyr_0933	0.29	-0.3
1,067,350	-		Psyr_0933	0.29	+0.1
1,067,423	+		Psyr_0933	0.33	-0.4
1,067,561	+		Psyr_0933	0.41	-0.1
1,067,562	-		Psyr_0933	0.41	-0.7
1,067,617	-		Psyr_0933	0.45	-0.5
1,067,617	-		Psyr_0933	0.45	+0.9
1,067,627	+		Psyr_0933	0.45	+0.3
1,067,627	+		Psyr_0933	0.45	-0.6
1,067,627	+		Psyr_0933	0.45	+0.8
1,067,628	-		Psyr_0933	0.45	+0.2
1,067,628	-		Psyr_0933	0.45	-0.8
1,067,705	+		Psyr_0933	0.50	-1.5
1,067,711	+		Psyr_0933	0.50	+0.1
1,067,711	+		Psyr_0933	0.50	-0.6
1,067,746	-		Psyr_0933	0.52	-1.5
1,067,781	-		Psyr_0933	0.54	+0.0
1,067,822	+		Psyr_0933	0.56	-0.1
1,067,822	+		Psyr_0933	0.56	-1.0
1,067,822	+		Psyr_0933	0.56	+0.2
1,067,822	+		Psyr_0933	0.56	-0.6
1,067,822	+		Psyr_0933	0.56	-1.1
1,067,822	+		Psyr_0933	0.56	+0.5
1,067,822	+		Psyr_0933	0.56	+1.5
1,067,822	+		Psyr_0933	0.56	+0.6
1,067,822	+		Psyr_0933	0.56	+0.4
1,067,822	+		Psyr_0933	0.56	-0.0
1,067,822	+		Psyr_0933	0.56	+0.6
1,067,822	+		Psyr_0933	0.56	+0.4
1,067,822	+		Psyr_0933	0.56	-0.3
1,067,823	-		Psyr_0933	0.56	+0.2
1,067,823	-		Psyr_0933	0.56	-0.2
1,067,823	-		Psyr_0933	0.56	-0.6
1,067,823	-		Psyr_0933	0.56	+0.1
1,067,823	-		Psyr_0933	0.56	+1.1
1,067,823	-		Psyr_0933	0.56	+0.1
1,067,823	-		Psyr_0933	0.56	-0.6
1,067,823	-		Psyr_0933	0.56	-0.9
1,067,823	-		Psyr_0933	0.56	-0.8
1,067,823	-		Psyr_0933	0.56	+1.5
1,068,032	+		Psyr_0933	0.68	-0.1
1,068,032	+		Psyr_0933	0.68	-0.5
1,068,060	+		Psyr_0933	0.70	-0.1
1,068,060	+		Psyr_0933	0.70	-0.3
1,068,275	+		Psyr_0933	0.82	-0.4
1,068,275	+		Psyr_0933	0.82	-0.4
1,068,275	+		Psyr_0933	0.82	+0.6
1,068,275	+		Psyr_0933	0.82	-1.6
1,068,275	+		Psyr_0933	0.82	+1.1
1,068,275	+		Psyr_0933	0.82	-1.6
1,068,275	+		Psyr_0933	0.82	-0.6
1,068,275	+		Psyr_0933	0.82	+1.1
1,068,275	+		Psyr_0933	0.82	+0.3
1,068,275	+		Psyr_0933	0.82	-0.7
1,068,275	+		Psyr_0933	0.82	-1.9
1,068,275	+		Psyr_0933	0.82	-0.2
1,068,276	-		Psyr_0933	0.82	-0.7
1,068,276	-		Psyr_0933	0.82	-0.5
1,068,276	-		Psyr_0933	0.82	+0.0
1,068,276	-		Psyr_0933	0.82	+2.4
1,068,276	-		Psyr_0933	0.82	-0.9
1,068,276	-		Psyr_0933	0.82	+0.3
1,068,276	-		Psyr_0933	0.82	-2.2
1,068,276	-		Psyr_0933	0.82	+0.6
1,068,276	-		Psyr_0933	0.82	+0.1
1,068,276	-		Psyr_0933	0.82	-0.9
1,068,276	-		Psyr_0933	0.82	-0.2
1,068,276	-		Psyr_0933	0.82	-0.7
1,068,276	-		Psyr_0933	0.82	-1.4
1,068,276	-		Psyr_0933	0.82	+0.2
1,068,279	+		Psyr_0933	0.82	+0.5
1,068,279	+		Psyr_0933	0.82	-0.7
1,068,279	+		Psyr_0933	0.82	+0.1
1,068,279	+		Psyr_0933	0.82	+0.6
1,068,279	+		Psyr_0933	0.82	+0.1
1,068,279	+		Psyr_0933	0.82	-0.2
1,068,279	+		Psyr_0933	0.82	-0.3
1,068,280	-		Psyr_0933	0.82	-1.0
1,068,280	-		Psyr_0933	0.82	+0.2
1,068,280	-		Psyr_0933	0.82	+0.5
1,068,280	-		Psyr_0933	0.82	+2.3
1,068,280	-		Psyr_0933	0.82	-1.8
1,068,280	-		Psyr_0933	0.82	+0.0
1,068,280	-		Psyr_0933	0.82	+0.5
1,068,350	+		Psyr_0933	0.86	+0.5
1,068,351	-		Psyr_0933	0.86	+0.1
1,068,371	+		Psyr_0933	0.87	-0.7
1,068,371	+		Psyr_0933	0.87	-0.3
1,068,417	-				-1.3
1,068,417	-				-0.7
1,068,471	+				+0.7
1,068,612	+				+0.6
1,068,612	+				+0.3
1,068,612	+				+0.5
1,068,613	-				-0.8
1,068,613	-				-0.4
1,068,696	-				+0.7
1,068,696	-				+0.1
1,068,720	+				+0.5
1,068,758	-		Psyr_0934	0.12	-0.2
1,068,787	+		Psyr_0934	0.14	-0.2
1,068,861	+		Psyr_0934	0.19	-0.7
1,068,861	+		Psyr_0934	0.19	+0.4
1,068,881	+		Psyr_0934	0.21	-1.1
1,068,881	+		Psyr_0934	0.21	-0.1
1,068,925	-		Psyr_0934	0.24	-0.1
1,069,033	-		Psyr_0934	0.32	+0.6
1,069,043	+		Psyr_0934	0.33	+0.8
1,069,061	+		Psyr_0934	0.35	+0.8
1,069,062	-		Psyr_0934	0.35	-1.0
1,069,062	-		Psyr_0934	0.35	+1.4
1,069,062	-		Psyr_0934	0.35	-0.7
1,069,097	+		Psyr_0934	0.37	-0.1
1,069,098	-		Psyr_0934	0.37	-0.6
1,069,190	-		Psyr_0934	0.44	+0.7
1,069,331	+		Psyr_0934	0.55	+0.3
1,069,331	+		Psyr_0934	0.55	-1.2
1,069,332	-		Psyr_0934	0.55	-0.9
1,069,403	+		Psyr_0934	0.60	+0.2
1,069,403	+		Psyr_0934	0.60	-1.2
1,069,404	-		Psyr_0934	0.60	+0.8
1,069,404	-		Psyr_0934	0.60	-1.9
1,069,412	+		Psyr_0934	0.61	+0.0
1,069,412	+		Psyr_0934	0.61	+0.5
1,069,412	+		Psyr_0934	0.61	-0.8
1,069,412	+		Psyr_0934	0.61	+0.1
1,069,412	+		Psyr_0934	0.61	+0.7
1,069,412	+		Psyr_0934	0.61	-1.6
1,069,412	+		Psyr_0934	0.61	+0.1
1,069,413	-		Psyr_0934	0.61	-0.3
1,069,413	-		Psyr_0934	0.61	+1.4
1,069,413	-		Psyr_0934	0.61	-0.4
1,069,413	-		Psyr_0934	0.61	+0.6
1,069,413	-		Psyr_0934	0.61	+0.4
1,069,413	-		Psyr_0934	0.61	-1.5
1,069,424	+		Psyr_0934	0.62	+0.3
1,069,424	+		Psyr_0934	0.62	-0.2
1,069,424	+		Psyr_0934	0.62	-0.9
1,069,424	+		Psyr_0934	0.62	+2.3
1,069,425	-		Psyr_0934	0.62	+0.2
1,069,505	+		Psyr_0934	0.68	-0.3
1,069,505	+		Psyr_0934	0.68	+1.0
1,069,524	+		Psyr_0934	0.70	-0.3
1,069,524	+		Psyr_0934	0.70	+0.2