Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0830

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0828 and Psyr_0829 are separated by 228 nucleotidesPsyr_0829 and Psyr_0830 overlap by 8 nucleotidesPsyr_0830 and Psyr_0831 are separated by 626 nucleotides Psyr_0828: Psyr_0828 - ketopantoate hydroxymethyltransferase, at 937,690 to 938,490 _0828 Psyr_0829: Psyr_0829 - 7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK, at 938,719 to 939,225 _0829 Psyr_0830: Psyr_0830 - Poly(A) polymerase, at 939,218 to 940,693 _0830 Psyr_0831: Psyr_0831 - Two-component response regulator CbrB, at 941,320 to 942,804 _0831 Position (kb) 939 940 941Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 938.311 kb on - strand, within Psyr_0828at 938.417 kb on + strandat 938.473 kb on - strandat 938.479 kb on + strandat 938.479 kb on + strandat 938.480 kb on - strandat 938.480 kb on - strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.492 kb on + strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.493 kb on - strandat 938.633 kb on + strandat 938.634 kb on - strandat 938.634 kb on - strandat 938.673 kb on + strandat 938.673 kb on + strandat 938.673 kb on + strandat 938.674 kb on - strandat 938.693 kb on + strandat 939.192 kb on - strandat 939.271 kb on + strandat 939.468 kb on - strand, within Psyr_0830at 939.468 kb on - strand, within Psyr_0830at 939.468 kb on - strand, within Psyr_0830at 939.468 kb on - strand, within Psyr_0830at 939.644 kb on + strand, within Psyr_0830at 939.758 kb on - strand, within Psyr_0830at 940.025 kb on - strand, within Psyr_0830at 940.025 kb on - strand, within Psyr_0830at 940.025 kb on - strand, within Psyr_0830at 940.027 kb on - strand, within Psyr_0830at 940.123 kb on - strand, within Psyr_0830at 940.126 kb on - strand, within Psyr_0830at 940.126 kb on - strand, within Psyr_0830at 940.180 kb on - strand, within Psyr_0830at 940.181 kb on + strand, within Psyr_0830at 940.182 kb on - strand, within Psyr_0830at 940.182 kb on - strand, within Psyr_0830at 940.182 kb on - strand, within Psyr_0830at 940.182 kb on - strand, within Psyr_0830at 940.182 kb on - strand, within Psyr_0830at 940.182 kb on - strand, within Psyr_0830at 940.182 kb on - strand, within Psyr_0830at 940.565 kb on - strandat 940.565 kb on - strandat 940.565 kb on - strandat 940.565 kb on - strandat 940.688 kb on + strandat 940.689 kb on - strandat 940.689 kb on - strandat 940.695 kb on + strandat 940.696 kb on - strandat 940.711 kb on + strandat 940.711 kb on + strandat 940.712 kb on - strandat 940.712 kb on - strandat 940.712 kb on - strandat 940.763 kb on + strandat 940.763 kb on + strandat 940.764 kb on - strandat 940.802 kb on + strandat 940.805 kb on + strandat 940.806 kb on - strandat 940.957 kb on + strandat 940.957 kb on + strandat 940.957 kb on + strandat 940.957 kb on + strandat 940.957 kb on + strandat 940.957 kb on + strandat 940.957 kb on + strandat 940.957 kb on + strandat 940.958 kb on - strandat 940.958 kb on - strandat 940.958 kb on - strandat 940.963 kb on + strandat 940.963 kb on + strandat 940.964 kb on - strandat 941.006 kb on + strandat 941.006 kb on + strandat 941.006 kb on + strandat 941.006 kb on + strandat 941.006 kb on + strandat 941.006 kb on + strandat 941.006 kb on + strandat 941.006 kb on + strandat 941.007 kb on - strandat 941.007 kb on - strandat 941.033 kb on - strandat 941.033 kb on - strandat 941.049 kb on + strandat 941.049 kb on + strandat 941.088 kb on + strandat 941.089 kb on - strandat 941.103 kb on - strandat 941.124 kb on - strandat 941.124 kb on - strandat 941.132 kb on + strandat 941.132 kb on + strandat 941.132 kb on + strandat 941.132 kb on + strandat 941.132 kb on + strandat 941.133 kb on - strandat 941.133 kb on - strandat 941.133 kb on - strandat 941.135 kb on - strandat 941.135 kb on - strandat 941.135 kb on - strandat 941.135 kb on - strandat 941.234 kb on + strandat 941.234 kb on + strandat 941.270 kb on - strandat 941.321 kb on + strandat 941.321 kb on + strandat 941.322 kb on - strandat 941.322 kb on - strandat 941.322 kb on - strandat 941.322 kb on - strandat 941.544 kb on - strand, within Psyr_0831at 941.657 kb on - strand, within Psyr_0831at 941.657 kb on - strand, within Psyr_0831at 941.676 kb on - strand, within Psyr_0831

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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938,311 - Psyr_0828 0.78 -0.6
938,417 + -2.4
938,473 - -1.7
938,479 + -1.6
938,479 + -2.6
938,480 - -2.8
938,480 - -1.6
938,492 + -1.8
938,492 + +0.2
938,492 + -1.5
938,492 + -1.3
938,492 + -2.0
938,492 + -4.5
938,492 + -1.2
938,492 + -1.6
938,492 + -1.2
938,492 + -2.5
938,492 + -0.2
938,492 + -2.1
938,492 + -3.3
938,493 - -1.4
938,493 - -2.5
938,493 - -2.0
938,493 - +0.0
938,493 - -0.5
938,493 - -1.5
938,493 - -0.9
938,493 - -2.8
938,493 - -0.9
938,493 - -0.8
938,493 - -0.7
938,493 - +0.2
938,493 - -3.7
938,633 + -1.8
938,634 - -1.6
938,634 - +0.6
938,673 + +1.1
938,673 + -0.0
938,673 + -0.4
938,674 - -0.4
938,693 + -0.3
939,192 - +2.3
939,271 + +0.2
939,468 - Psyr_0830 0.17 +1.0
939,468 - Psyr_0830 0.17 +1.2
939,468 - Psyr_0830 0.17 -0.2
939,468 - Psyr_0830 0.17 -1.4
939,644 + Psyr_0830 0.29 -1.3
939,758 - Psyr_0830 0.37 -1.4
940,025 - Psyr_0830 0.55 -1.4
940,025 - Psyr_0830 0.55 -0.5
940,025 - Psyr_0830 0.55 -1.2
940,027 - Psyr_0830 0.55 -2.0
940,123 - Psyr_0830 0.61 -1.3
940,126 - Psyr_0830 0.62 -0.7
940,126 - Psyr_0830 0.62 -1.7
940,180 - Psyr_0830 0.65 -0.8
940,181 + Psyr_0830 0.65 -0.2
940,182 - Psyr_0830 0.65 +1.4
940,182 - Psyr_0830 0.65 +0.7
940,182 - Psyr_0830 0.65 -0.4
940,182 - Psyr_0830 0.65 -1.2
940,182 - Psyr_0830 0.65 -1.4
940,182 - Psyr_0830 0.65 -1.6
940,182 - Psyr_0830 0.65 -1.2
940,565 - +0.2
940,565 - +0.8
940,565 - +1.2
940,565 - -1.4
940,688 + -0.0
940,689 - +1.0
940,689 - -0.5
940,695 + -0.2
940,696 - +0.2
940,711 + -0.5
940,711 + -1.2
940,712 - -1.2
940,712 - +0.0
940,712 - +0.2
940,763 + +0.1
940,763 + -0.8
940,764 - -0.4
940,802 + -0.2
940,805 + +0.2
940,806 - -0.6
940,957 + +0.3
940,957 + -0.6
940,957 + -0.2
940,957 + -1.5
940,957 + -0.2
940,957 + +0.4
940,957 + -0.8
940,957 + +2.5
940,958 - +1.6
940,958 - +1.6
940,958 - -1.4
940,963 + -0.1
940,963 + -1.6
940,964 - -0.2
941,006 + -0.1
941,006 + +0.8
941,006 + -2.3
941,006 + -0.8
941,006 + -1.2
941,006 + -0.8
941,006 + -0.1
941,006 + -0.4
941,007 - -0.8
941,007 - +0.4
941,033 - +0.7
941,033 - -0.4
941,049 + -0.7
941,049 + +0.2
941,088 + -0.2
941,089 - +0.6
941,103 - -0.2
941,124 - -0.2
941,124 - +0.7
941,132 + +0.7
941,132 + +0.1
941,132 + +0.7
941,132 + +0.6
941,132 + +1.4
941,133 - -0.6
941,133 - -0.4
941,133 - +0.6
941,135 - -0.3
941,135 - +1.2
941,135 - +0.7
941,135 - -1.4
941,234 + -0.5
941,234 + +0.5
941,270 - +0.5
941,321 + -0.6
941,321 + -0.1
941,322 - +0.3
941,322 - +0.2
941,322 - -0.8
941,322 - -0.7
941,544 - Psyr_0831 0.15 -2.9
941,657 - Psyr_0831 0.23 -0.8
941,657 - Psyr_0831 0.23 -0.8
941,676 - Psyr_0831 0.24 -0.8

Or see this region's nucleotide sequence