Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0335

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0333 and Psyr_0334 are separated by 35 nucleotidesPsyr_0334 and Psyr_0335 are separated by 48 nucleotidesPsyr_0335 and Psyr_0336 are separated by 112 nucleotides Psyr_0333: Psyr_0333 - hypothetical protein, at 353,004 to 354,185 _0333 Psyr_0334: Psyr_0334 - ectoine synthase, at 354,221 to 354,607 _0334 Psyr_0335: Psyr_0335 - membrane protein, putative, at 354,656 to 355,882 _0335 Psyr_0336: Psyr_0336 - Outer membrane autotransporter barrel, at 355,995 to 358,982 _0336 Position (kb) 354 355 356Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 353.700 kb on + strand, within Psyr_0333at 353.700 kb on + strand, within Psyr_0333at 353.701 kb on - strand, within Psyr_0333at 353.701 kb on - strand, within Psyr_0333at 353.792 kb on - strand, within Psyr_0333at 353.868 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.979 kb on + strand, within Psyr_0333at 354.260 kb on + strand, within Psyr_0334at 354.260 kb on + strand, within Psyr_0334at 354.260 kb on + strand, within Psyr_0334at 354.261 kb on - strand, within Psyr_0334at 354.326 kb on - strand, within Psyr_0334at 354.398 kb on + strand, within Psyr_0334at 354.399 kb on - strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.575 kb on - strandat 354.603 kb on - strandat 354.603 kb on - strandat 354.603 kb on - strandat 354.605 kb on + strandat 354.606 kb on - strandat 354.606 kb on - strandat 354.606 kb on - strandat 354.606 kb on - strandat 354.606 kb on - strandat 354.661 kb on + strandat 354.669 kb on - strandat 354.669 kb on - strandat 354.682 kb on + strandat 354.683 kb on - strandat 354.745 kb on - strandat 354.745 kb on - strandat 354.849 kb on - strand, within Psyr_0335at 354.871 kb on + strand, within Psyr_0335at 354.872 kb on - strand, within Psyr_0335at 354.884 kb on + strand, within Psyr_0335at 354.885 kb on - strand, within Psyr_0335at 355.019 kb on + strand, within Psyr_0335at 355.019 kb on + strand, within Psyr_0335at 355.019 kb on + strand, within Psyr_0335at 355.020 kb on - strand, within Psyr_0335at 355.020 kb on - strand, within Psyr_0335at 355.020 kb on - strand, within Psyr_0335at 355.021 kb on + strand, within Psyr_0335at 355.021 kb on + strand, within Psyr_0335at 355.022 kb on - strand, within Psyr_0335at 355.034 kb on + strand, within Psyr_0335at 355.034 kb on + strand, within Psyr_0335at 355.034 kb on + strand, within Psyr_0335at 355.035 kb on - strand, within Psyr_0335at 355.035 kb on - strand, within Psyr_0335at 355.040 kb on + strand, within Psyr_0335at 355.040 kb on + strand, within Psyr_0335at 355.040 kb on + strand, within Psyr_0335at 355.041 kb on - strand, within Psyr_0335at 355.041 kb on - strand, within Psyr_0335at 355.058 kb on + strand, within Psyr_0335at 355.059 kb on - strand, within Psyr_0335at 355.125 kb on + strand, within Psyr_0335at 355.125 kb on + strand, within Psyr_0335at 355.126 kb on - strand, within Psyr_0335at 355.126 kb on - strand, within Psyr_0335at 355.388 kb on + strand, within Psyr_0335at 355.388 kb on + strand, within Psyr_0335at 355.388 kb on + strand, within Psyr_0335at 355.389 kb on - strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.483 kb on + strand, within Psyr_0335at 355.534 kb on + strand, within Psyr_0335at 355.534 kb on + strand, within Psyr_0335at 355.535 kb on - strand, within Psyr_0335at 355.535 kb on - strand, within Psyr_0335at 355.616 kb on + strand, within Psyr_0335at 355.616 kb on + strand, within Psyr_0335at 355.616 kb on + strand, within Psyr_0335at 355.617 kb on - strand, within Psyr_0335at 355.617 kb on - strand, within Psyr_0335at 355.617 kb on - strand, within Psyr_0335at 355.617 kb on - strand, within Psyr_0335at 355.945 kb on + strandat 355.946 kb on - strandat 355.996 kb on + strandat 355.997 kb on - strandat 355.997 kb on - strandat 356.085 kb on - strandat 356.209 kb on + strandat 356.379 kb on + strand, within Psyr_0336at 356.379 kb on + strand, within Psyr_0336at 356.379 kb on + strand, within Psyr_0336at 356.379 kb on + strand, within Psyr_0336at 356.379 kb on + strand, within Psyr_0336at 356.379 kb on + strand, within Psyr_0336at 356.379 kb on + strand, within Psyr_0336at 356.380 kb on - strand, within Psyr_0336at 356.435 kb on - strand, within Psyr_0336at 356.473 kb on + strand, within Psyr_0336at 356.473 kb on + strand, within Psyr_0336at 356.473 kb on + strand, within Psyr_0336at 356.473 kb on + strand, within Psyr_0336at 356.473 kb on + strand, within Psyr_0336at 356.473 kb on + strand, within Psyr_0336at 356.474 kb on - strand, within Psyr_0336at 356.474 kb on - strand, within Psyr_0336at 356.474 kb on - strand, within Psyr_0336at 356.608 kb on + strand, within Psyr_0336at 356.608 kb on + strand, within Psyr_0336at 356.608 kb on + strand, within Psyr_0336at 356.609 kb on - strand, within Psyr_0336at 356.609 kb on - strand, within Psyr_0336at 356.609 kb on - strand, within Psyr_0336at 356.609 kb on - strand, within Psyr_0336

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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353,700 + Psyr_0333 0.59 +0.8
353,700 + Psyr_0333 0.59 +0.6
353,701 - Psyr_0333 0.59 +1.3
353,701 - Psyr_0333 0.59 -0.2
353,792 - Psyr_0333 0.67 +1.1
353,868 + Psyr_0333 0.73 +0.1
353,886 + Psyr_0333 0.75 -1.3
353,886 + Psyr_0333 0.75 -1.2
353,886 + Psyr_0333 0.75 +0.9
353,886 + Psyr_0333 0.75 -0.3
353,886 + Psyr_0333 0.75 +0.2
353,887 - Psyr_0333 0.75 -0.2
353,887 - Psyr_0333 0.75 -0.1
353,887 - Psyr_0333 0.75 -0.4
353,887 - Psyr_0333 0.75 +0.3
353,887 - Psyr_0333 0.75 -0.4
353,887 - Psyr_0333 0.75 -1.2
353,979 + Psyr_0333 0.82 +0.0
354,260 + Psyr_0334 0.10 +0.4
354,260 + Psyr_0334 0.10 +1.4
354,260 + Psyr_0334 0.10 -0.2
354,261 - Psyr_0334 0.10 -0.9
354,326 - Psyr_0334 0.27 -1.6
354,398 + Psyr_0334 0.46 +0.7
354,399 - Psyr_0334 0.46 -1.3
354,444 + Psyr_0334 0.58 +3.0
354,444 + Psyr_0334 0.58 +1.2
354,444 + Psyr_0334 0.58 -0.2
354,444 + Psyr_0334 0.58 -0.5
354,444 + Psyr_0334 0.58 -0.2
354,444 + Psyr_0334 0.58 +0.1
354,445 - Psyr_0334 0.58 -2.2
354,445 - Psyr_0334 0.58 +0.5
354,445 - Psyr_0334 0.58 -1.8
354,445 - Psyr_0334 0.58 -0.8
354,445 - Psyr_0334 0.58 -0.0
354,470 + Psyr_0334 0.64 +0.4
354,470 + Psyr_0334 0.64 -0.7
354,470 + Psyr_0334 0.64 -0.0
354,470 + Psyr_0334 0.64 +1.4
354,470 + Psyr_0334 0.64 -0.4
354,470 + Psyr_0334 0.64 -0.2
354,470 + Psyr_0334 0.64 +0.2
354,470 + Psyr_0334 0.64 +0.5
354,470 + Psyr_0334 0.64 +0.7
354,470 + Psyr_0334 0.64 -3.0
354,470 + Psyr_0334 0.64 +0.6
354,470 + Psyr_0334 0.64 +0.5
354,470 + Psyr_0334 0.64 -1.1
354,470 + Psyr_0334 0.64 +1.0
354,470 + Psyr_0334 0.64 -0.7
354,470 + Psyr_0334 0.64 -0.3
354,470 + Psyr_0334 0.64 +0.4
354,470 + Psyr_0334 0.64 -1.2
354,470 + Psyr_0334 0.64 +0.2
354,470 + Psyr_0334 0.64 +0.3
354,470 + Psyr_0334 0.64 +1.2
354,470 + Psyr_0334 0.64 +0.2
354,470 + Psyr_0334 0.64 +0.9
354,470 + Psyr_0334 0.64 +0.2
354,470 + Psyr_0334 0.64 +0.4
354,471 - Psyr_0334 0.65 -1.6
354,471 - Psyr_0334 0.65 -2.2
354,471 - Psyr_0334 0.65 -0.7
354,471 - Psyr_0334 0.65 -0.0
354,471 - Psyr_0334 0.65 -0.4
354,471 - Psyr_0334 0.65 -0.6
354,471 - Psyr_0334 0.65 -0.3
354,471 - Psyr_0334 0.65 -0.6
354,471 - Psyr_0334 0.65 -0.2
354,471 - Psyr_0334 0.65 -0.7
354,471 - Psyr_0334 0.65 -0.4
354,471 - Psyr_0334 0.65 -0.7
354,471 - Psyr_0334 0.65 -0.8
354,471 - Psyr_0334 0.65 -0.2
354,471 - Psyr_0334 0.65 +0.1
354,471 - Psyr_0334 0.65 -1.1
354,471 - Psyr_0334 0.65 +0.9
354,471 - Psyr_0334 0.65 +0.5
354,471 - Psyr_0334 0.65 -1.2
354,471 - Psyr_0334 0.65 -1.9
354,471 - Psyr_0334 0.65 +0.7
354,471 - Psyr_0334 0.65 -1.3
354,471 - Psyr_0334 0.65 -1.6
354,471 - Psyr_0334 0.65 -0.1
354,471 - Psyr_0334 0.65 +1.3
354,575 - +0.6
354,603 - +1.3
354,603 - -1.8
354,603 - +0.1
354,605 + +0.3
354,606 - +0.9
354,606 - +0.2
354,606 - +1.0
354,606 - -0.4
354,606 - -0.4
354,661 + +0.8
354,669 - -1.7
354,669 - -1.1
354,682 + +0.2
354,683 - -0.7
354,745 - -0.2
354,745 - -0.9
354,849 - Psyr_0335 0.16 -0.8
354,871 + Psyr_0335 0.18 -1.0
354,872 - Psyr_0335 0.18 -0.4
354,884 + Psyr_0335 0.19 +0.3
354,885 - Psyr_0335 0.19 -1.1
355,019 + Psyr_0335 0.30 -1.2
355,019 + Psyr_0335 0.30 -0.2
355,019 + Psyr_0335 0.30 -1.9
355,020 - Psyr_0335 0.30 -0.6
355,020 - Psyr_0335 0.30 -0.4
355,020 - Psyr_0335 0.30 -0.0
355,021 + Psyr_0335 0.30 -1.2
355,021 + Psyr_0335 0.30 -3.1
355,022 - Psyr_0335 0.30 -0.2
355,034 + Psyr_0335 0.31 +0.2
355,034 + Psyr_0335 0.31 -2.7
355,034 + Psyr_0335 0.31 +0.3
355,035 - Psyr_0335 0.31 -1.4
355,035 - Psyr_0335 0.31 +1.1
355,040 + Psyr_0335 0.31 -0.6
355,040 + Psyr_0335 0.31 -0.2
355,040 + Psyr_0335 0.31 -1.4
355,041 - Psyr_0335 0.31 +0.4
355,041 - Psyr_0335 0.31 -1.1
355,058 + Psyr_0335 0.33 -1.9
355,059 - Psyr_0335 0.33 -0.6
355,125 + Psyr_0335 0.38 -1.3
355,125 + Psyr_0335 0.38 -2.6
355,126 - Psyr_0335 0.38 -2.6
355,126 - Psyr_0335 0.38 +0.7
355,388 + Psyr_0335 0.60 +2.4
355,388 + Psyr_0335 0.60 -2.3
355,388 + Psyr_0335 0.60 -0.6
355,389 - Psyr_0335 0.60 -2.2
355,409 + Psyr_0335 0.61 -0.5
355,409 + Psyr_0335 0.61 -2.1
355,409 + Psyr_0335 0.61 -1.8
355,409 + Psyr_0335 0.61 -2.5
355,409 + Psyr_0335 0.61 -1.8
355,409 + Psyr_0335 0.61 -2.0
355,409 + Psyr_0335 0.61 -0.6
355,409 + Psyr_0335 0.61 -0.2
355,410 - Psyr_0335 0.61 -2.1
355,410 - Psyr_0335 0.61 -0.5
355,410 - Psyr_0335 0.61 -0.4
355,410 - Psyr_0335 0.61 -2.7
355,410 - Psyr_0335 0.61 -3.0
355,483 + Psyr_0335 0.67 -1.3
355,534 + Psyr_0335 0.72 -0.6
355,534 + Psyr_0335 0.72 -1.2
355,535 - Psyr_0335 0.72 -1.3
355,535 - Psyr_0335 0.72 -0.6
355,616 + Psyr_0335 0.78 -2.4
355,616 + Psyr_0335 0.78 -1.3
355,616 + Psyr_0335 0.78 -0.4
355,617 - Psyr_0335 0.78 -0.6
355,617 - Psyr_0335 0.78 -1.6
355,617 - Psyr_0335 0.78 -0.9
355,617 - Psyr_0335 0.78 -1.3
355,945 + -3.6
355,946 - -0.4
355,996 + +0.5
355,997 - -0.6
355,997 - +0.4
356,085 - -1.0
356,209 + +0.3
356,379 + Psyr_0336 0.13 +0.5
356,379 + Psyr_0336 0.13 -0.9
356,379 + Psyr_0336 0.13 +0.3
356,379 + Psyr_0336 0.13 -0.3
356,379 + Psyr_0336 0.13 +0.8
356,379 + Psyr_0336 0.13 +0.2
356,379 + Psyr_0336 0.13 -0.6
356,380 - Psyr_0336 0.13 +0.3
356,435 - Psyr_0336 0.15 -0.5
356,473 + Psyr_0336 0.16 +0.7
356,473 + Psyr_0336 0.16 -1.4
356,473 + Psyr_0336 0.16 -0.5
356,473 + Psyr_0336 0.16 -0.3
356,473 + Psyr_0336 0.16 -0.1
356,473 + Psyr_0336 0.16 +0.6
356,474 - Psyr_0336 0.16 +0.2
356,474 - Psyr_0336 0.16 -0.6
356,474 - Psyr_0336 0.16 +0.1
356,608 + Psyr_0336 0.21 -0.7
356,608 + Psyr_0336 0.21 -0.2
356,608 + Psyr_0336 0.21 -1.2
356,609 - Psyr_0336 0.21 -0.6
356,609 - Psyr_0336 0.21 -0.7
356,609 - Psyr_0336 0.21 -2.0
356,609 - Psyr_0336 0.21 +1.0

Or see this region's nucleotide sequence