Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0263 and Psyr_0264 are separated by 10 nucleotides Psyr_0264 and Psyr_0265 are separated by 53 nucleotides Psyr_0265 and Psyr_0266 are separated by 23 nucleotides
Psyr_0263: Psyr_0263 - Two-component response regulator AlgB, at 278,848 to 280,194
_0263
Psyr_0264: Psyr_0264 - Alginate biosynthesis sensor protein KinB, at 280,205 to 281,992
_0264
Psyr_0265: Psyr_0265 - N-acetylmuramoyl-L-alanine amidase, family 2, at 282,046 to 282,897
_0265
Psyr_0266: Psyr_0266 - GGDEF domain protein, at 282,921 to 284,993
_0266
Position (kb) 280
281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 279.650 kb on - strand, within Psyr_0263 at 279.763 kb on + strand, within Psyr_0263 at 279.764 kb on - strand, within Psyr_0263 at 279.865 kb on + strand, within Psyr_0263 at 279.865 kb on + strand, within Psyr_0263 at 279.865 kb on + strand, within Psyr_0263 at 279.866 kb on - strand, within Psyr_0263 at 279.866 kb on - strand, within Psyr_0263 at 279.919 kb on + strand, within Psyr_0263 at 279.995 kb on + strand, within Psyr_0263 at 279.995 kb on + strand, within Psyr_0263 at 279.996 kb on - strand, within Psyr_0263 at 280.100 kb on + strand at 280.100 kb on + strand at 280.101 kb on - strand at 280.183 kb on + strand at 280.183 kb on + strand at 280.183 kb on + strand at 280.184 kb on - strand at 280.184 kb on - strand at 280.184 kb on - strand at 280.190 kb on + strand at 280.190 kb on + strand at 280.190 kb on + strand at 280.190 kb on + strand at 280.191 kb on - strand at 280.191 kb on - strand at 280.197 kb on + strand at 280.197 kb on + strand at 280.198 kb on - strand at 280.198 kb on - strand at 280.198 kb on - strand at 280.198 kb on - strand at 280.198 kb on - strand at 280.319 kb on - strand at 280.342 kb on + strand at 280.342 kb on + strand at 280.342 kb on + strand at 280.342 kb on + strand at 280.538 kb on + strand, within Psyr_0264 at 280.539 kb on - strand, within Psyr_0264 at 280.568 kb on + strand, within Psyr_0264 at 280.569 kb on - strand, within Psyr_0264 at 280.590 kb on + strand, within Psyr_0264 at 280.590 kb on + strand, within Psyr_0264 at 280.591 kb on - strand, within Psyr_0264 at 280.591 kb on - strand, within Psyr_0264 at 280.591 kb on - strand, within Psyr_0264 at 281.003 kb on - strand, within Psyr_0264 at 281.003 kb on - strand, within Psyr_0264 at 281.234 kb on + strand, within Psyr_0264 at 281.235 kb on - strand, within Psyr_0264 at 281.623 kb on + strand, within Psyr_0264 at 281.642 kb on - strand, within Psyr_0264 at 281.942 kb on + strand at 281.943 kb on - strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.972 kb on + strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.973 kb on - strand at 281.974 kb on + strand at 281.975 kb on - strand at 282.192 kb on - strand, within Psyr_0265 at 282.369 kb on + strand, within Psyr_0265 at 282.370 kb on - strand, within Psyr_0265 at 282.605 kb on + strand, within Psyr_0265 at 282.605 kb on + strand, within Psyr_0265 at 282.605 kb on + strand, within Psyr_0265 at 282.605 kb on + strand, within Psyr_0265 at 282.605 kb on + strand, within Psyr_0265 at 282.605 kb on + strand, within Psyr_0265 at 282.605 kb on + strand, within Psyr_0265 at 282.605 kb on + strand, within Psyr_0265 at 282.606 kb on - strand, within Psyr_0265 at 282.606 kb on - strand, within Psyr_0265 at 282.606 kb on - strand, within Psyr_0265 at 282.606 kb on - strand, within Psyr_0265 at 282.606 kb on - strand, within Psyr_0265 at 282.606 kb on - strand, within Psyr_0265 at 282.638 kb on + strand, within Psyr_0265 at 282.638 kb on + strand, within Psyr_0265 at 282.639 kb on - strand, within Psyr_0265 at 282.667 kb on + strand, within Psyr_0265 at 282.668 kb on - strand, within Psyr_0265 at 282.668 kb on - strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.701 kb on + strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.702 kb on - strand, within Psyr_0265 at 282.716 kb on + strand, within Psyr_0265 at 282.716 kb on + strand, within Psyr_0265 at 282.716 kb on + strand, within Psyr_0265 at 282.716 kb on + strand, within Psyr_0265 at 282.716 kb on + strand, within Psyr_0265 at 282.717 kb on - strand, within Psyr_0265 at 282.717 kb on - strand, within Psyr_0265 at 282.717 kb on - strand, within Psyr_0265 at 282.811 kb on + strand, within Psyr_0265 at 282.811 kb on + strand, within Psyr_0265 at 282.815 kb on + strand at 282.815 kb on + strand at 282.815 kb on + strand at 282.815 kb on + strand at 282.816 kb on - strand at 282.816 kb on - strand at 282.816 kb on - strand at 282.816 kb on - strand at 282.870 kb on + strand at 282.872 kb on + strand at 282.873 kb on - strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.878 kb on + strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.879 kb on - strand at 282.964 kb on + strand at 282.964 kb on + strand at 282.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 279,650 - Psyr_0263 0.60 +0.6 279,763 + Psyr_0263 0.68 +0.2 279,764 - Psyr_0263 0.68 +1.5 279,865 + Psyr_0263 0.76 -0.0 279,865 + Psyr_0263 0.76 -1.5 279,865 + Psyr_0263 0.76 -0.9 279,866 - Psyr_0263 0.76 +0.8 279,866 - Psyr_0263 0.76 +0.7 279,919 + Psyr_0263 0.80 +1.5 279,995 + Psyr_0263 0.85 +1.0 279,995 + Psyr_0263 0.85 +1.5 279,996 - Psyr_0263 0.85 +1.3 280,100 + +0.2 280,100 + +0.5 280,101 - +0.7 280,183 + +0.5 280,183 + +0.0 280,183 + +0.2 280,184 - -1.2 280,184 - -0.5 280,184 - -0.4 280,190 + -0.1 280,190 + +0.5 280,190 + -0.0 280,190 + +1.5 280,191 - -0.9 280,191 - +1.1 280,197 + +0.5 280,197 + +0.5 280,198 - -1.7 280,198 - -2.2 280,198 - -1.1 280,198 - -0.8 280,198 - +1.4 280,319 - -2.5 280,342 + -0.6 280,342 + -0.9 280,342 + -0.0 280,342 + -0.0 280,538 + Psyr_0264 0.19 -0.6 280,539 - Psyr_0264 0.19 -1.1 280,568 + Psyr_0264 0.20 -1.5 280,569 - Psyr_0264 0.20 -1.4 280,590 + Psyr_0264 0.22 +0.2 280,590 + Psyr_0264 0.22 +0.1 280,591 - Psyr_0264 0.22 -0.9 280,591 - Psyr_0264 0.22 -0.2 280,591 - Psyr_0264 0.22 -0.4 281,003 - Psyr_0264 0.45 -0.5 281,003 - Psyr_0264 0.45 -2.6 281,234 + Psyr_0264 0.58 -0.3 281,235 - Psyr_0264 0.58 -0.9 281,623 + Psyr_0264 0.79 -0.7 281,642 - Psyr_0264 0.80 -2.2 281,942 + -1.2 281,943 - -1.6 281,972 + -0.4 281,972 + -1.4 281,972 + -1.6 281,972 + -2.1 281,972 + -0.9 281,972 + -1.0 281,972 + -0.9 281,972 + +0.4 281,972 + +1.4 281,972 + -1.3 281,972 + -1.1 281,972 + +0.4 281,972 + +0.0 281,972 + -0.4 281,972 + -0.3 281,972 + -0.5 281,972 + -1.0 281,972 + -1.2 281,972 + +0.7 281,972 + -1.7 281,973 - -0.9 281,973 - -0.2 281,973 - -0.5 281,973 - -0.9 281,973 - +0.3 281,973 - -2.5 281,973 - -0.8 281,973 - -0.1 281,973 - -1.1 281,973 - +0.2 281,973 - -1.7 281,973 - -0.9 281,973 - -0.7 281,973 - -0.6 281,973 - -0.2 281,973 - -0.1 281,973 - -0.2 281,974 + -1.9 281,975 - -0.9 282,192 - Psyr_0265 0.17 -0.1 282,369 + Psyr_0265 0.38 -0.1 282,370 - Psyr_0265 0.38 -0.1 282,605 + Psyr_0265 0.66 +0.4 282,605 + Psyr_0265 0.66 +0.1 282,605 + Psyr_0265 0.66 +0.3 282,605 + Psyr_0265 0.66 -2.0 282,605 + Psyr_0265 0.66 -0.1 282,605 + Psyr_0265 0.66 -1.2 282,605 + Psyr_0265 0.66 +0.4 282,605 + Psyr_0265 0.66 +1.4 282,606 - Psyr_0265 0.66 +0.6 282,606 - Psyr_0265 0.66 -0.3 282,606 - Psyr_0265 0.66 +0.7 282,606 - Psyr_0265 0.66 -0.5 282,606 - Psyr_0265 0.66 -0.1 282,606 - Psyr_0265 0.66 -0.8 282,638 + Psyr_0265 0.69 -0.0 282,638 + Psyr_0265 0.69 +0.8 282,639 - Psyr_0265 0.70 -0.5 282,667 + Psyr_0265 0.73 -0.8 282,668 - Psyr_0265 0.73 +0.8 282,668 - Psyr_0265 0.73 +0.1 282,701 + Psyr_0265 0.77 +1.0 282,701 + Psyr_0265 0.77 +0.3 282,701 + Psyr_0265 0.77 +0.4 282,701 + Psyr_0265 0.77 +0.6 282,701 + Psyr_0265 0.77 -1.0 282,701 + Psyr_0265 0.77 -0.9 282,701 + Psyr_0265 0.77 +0.7 282,701 + Psyr_0265 0.77 -0.1 282,701 + Psyr_0265 0.77 -0.3 282,702 - Psyr_0265 0.77 -0.3 282,702 - Psyr_0265 0.77 +0.3 282,702 - Psyr_0265 0.77 -0.1 282,702 - Psyr_0265 0.77 -0.3 282,702 - Psyr_0265 0.77 -0.3 282,702 - Psyr_0265 0.77 +0.7 282,702 - Psyr_0265 0.77 +0.8 282,702 - Psyr_0265 0.77 -0.1 282,702 - Psyr_0265 0.77 -2.4 282,702 - Psyr_0265 0.77 +0.6 282,702 - Psyr_0265 0.77 -1.9 282,716 + Psyr_0265 0.79 -0.4 282,716 + Psyr_0265 0.79 -0.2 282,716 + Psyr_0265 0.79 -1.2 282,716 + Psyr_0265 0.79 +0.1 282,716 + Psyr_0265 0.79 +0.1 282,717 - Psyr_0265 0.79 -0.8 282,717 - Psyr_0265 0.79 +0.7 282,717 - Psyr_0265 0.79 -0.1 282,811 + Psyr_0265 0.90 +0.5 282,811 + Psyr_0265 0.90 -0.1 282,815 + -0.1 282,815 + -0.3 282,815 + -2.8 282,815 + -0.1 282,816 - +0.1 282,816 - -0.8 282,816 - -1.0 282,816 - -0.7 282,870 + -0.0 282,872 + +0.6 282,873 - -0.4 282,878 + +0.0 282,878 + +0.1 282,878 + +0.1 282,878 + +0.1 282,878 + -0.3 282,878 + +0.5 282,878 + +1.1 282,878 + +0.9 282,878 + -1.7 282,878 + +0.2 282,878 + +0.6 282,878 + -0.6 282,879 - +0.0 282,879 - -0.1 282,879 - +0.8 282,879 - +0.3 282,879 - +0.4 282,879 - +0.1 282,879 - -0.5 282,879 - +0.1 282,879 - +0.4 282,879 - +0.5 282,879 - -1.1 282,964 + +1.6 282,964 + -0.7 282,965 - -0.2
Or see this region's nucleotide sequence