Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0046 and Psyr_0047 are separated by 44 nucleotides Psyr_0047 and Psyr_0048 are separated by 93 nucleotides Psyr_0048 and Psyr_0049 are separated by 211 nucleotides Psyr_0049 and Psyr_0050 are separated by 156 nucleotides Psyr_0050 and Psyr_0051 are separated by 67 nucleotides
Psyr_0046: Psyr_0046 - conserved hypothetical protein, at 47,937 to 48,227
_0046
Psyr_0047: Psyr_0047 - hypothetical protein, at 48,272 to 48,574
_0047
Psyr_0048: Psyr_0048 - conserved hypothetical protein, at 48,668 to 48,898
_0048
Psyr_0049: Psyr_0049 - Cytochrome c, class I:Iron permease FTR1, at 49,110 to 51,008
_0049
Psyr_0050: Psyr_0050 - Lysine exporter protein (LYSE/YGGA), at 51,165 to 51,797
_0050
Psyr_0051: Psyr_0051 - conserved hypothetical protein, at 51,865 to 52,458
_0051
Position (kb) 49
50
51
52 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.226 kb on - strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.240 kb on - strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.271 kb on - strand at 48.271 kb on - strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.274 kb on - strand at 48.274 kb on - strand at 48.274 kb on - strand at 48.277 kb on + strand at 48.277 kb on + strand at 48.348 kb on + strand, within Psyr_0047 at 48.348 kb on + strand, within Psyr_0047 at 48.349 kb on - strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.369 kb on - strand, within Psyr_0047 at 48.369 kb on - strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.451 kb on + strand, within Psyr_0047 at 48.464 kb on + strand, within Psyr_0047 at 48.465 kb on - strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.512 kb on + strand, within Psyr_0047 at 48.523 kb on + strand, within Psyr_0047 at 48.568 kb on + strand at 48.568 kb on + strand at 48.569 kb on - strand at 48.592 kb on - strand at 48.635 kb on + strand at 48.635 kb on + strand at 48.635 kb on + strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.669 kb on + strand at 48.834 kb on - strand, within Psyr_0048 at 48.885 kb on + strand at 48.885 kb on + strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.959 kb on + strand at 48.959 kb on + strand at 48.959 kb on + strand at 48.960 kb on - strand at 48.960 kb on - strand at 48.960 kb on - strand at 49.026 kb on - strand at 49.029 kb on + strand at 49.045 kb on + strand at 49.046 kb on - strand at 49.052 kb on + strand at 49.052 kb on + strand at 49.052 kb on + strand at 49.052 kb on + strand at 49.053 kb on - strand at 49.053 kb on - strand at 49.053 kb on - strand at 49.058 kb on + strand at 49.058 kb on + strand at 49.058 kb on + strand at 49.059 kb on - strand at 49.059 kb on - strand at 49.059 kb on - strand at 49.059 kb on - strand at 49.159 kb on + strand at 49.159 kb on + strand at 49.159 kb on + strand at 49.208 kb on - strand at 49.270 kb on - strand at 49.489 kb on + strand, within Psyr_0049 at 49.490 kb on - strand, within Psyr_0049 at 49.490 kb on - strand, within Psyr_0049 at 49.588 kb on + strand, within Psyr_0049 at 49.588 kb on + strand, within Psyr_0049 at 49.589 kb on - strand, within Psyr_0049 at 49.589 kb on - strand, within Psyr_0049 at 49.589 kb on - strand, within Psyr_0049 at 49.589 kb on - strand, within Psyr_0049 at 49.717 kb on + strand, within Psyr_0049 at 49.717 kb on + strand, within Psyr_0049 at 49.717 kb on + strand, within Psyr_0049 at 49.717 kb on + strand, within Psyr_0049 at 49.717 kb on + strand, within Psyr_0049 at 49.717 kb on + strand, within Psyr_0049 at 49.718 kb on - strand, within Psyr_0049 at 49.718 kb on - strand, within Psyr_0049 at 49.718 kb on - strand, within Psyr_0049 at 49.888 kb on + strand, within Psyr_0049 at 49.888 kb on + strand, within Psyr_0049 at 49.888 kb on + strand, within Psyr_0049 at 49.888 kb on + strand, within Psyr_0049 at 49.888 kb on + strand, within Psyr_0049 at 49.889 kb on - strand, within Psyr_0049 at 49.889 kb on - strand, within Psyr_0049 at 49.889 kb on - strand, within Psyr_0049 at 49.889 kb on - strand, within Psyr_0049 at 49.889 kb on - strand, within Psyr_0049 at 49.889 kb on - strand, within Psyr_0049 at 49.889 kb on - strand, within Psyr_0049 at 50.101 kb on + strand, within Psyr_0049 at 50.101 kb on + strand, within Psyr_0049 at 50.102 kb on - strand, within Psyr_0049 at 50.122 kb on + strand, within Psyr_0049 at 50.122 kb on + strand, within Psyr_0049 at 50.123 kb on - strand, within Psyr_0049 at 50.149 kb on + strand, within Psyr_0049 at 50.150 kb on - strand, within Psyr_0049 at 50.176 kb on - strand, within Psyr_0049 at 50.185 kb on + strand, within Psyr_0049 at 50.186 kb on - strand, within Psyr_0049 at 50.186 kb on - strand, within Psyr_0049 at 50.186 kb on - strand, within Psyr_0049 at 50.186 kb on - strand, within Psyr_0049 at 50.214 kb on + strand, within Psyr_0049 at 50.214 kb on + strand, within Psyr_0049 at 50.214 kb on + strand, within Psyr_0049 at 50.214 kb on + strand, within Psyr_0049 at 50.215 kb on - strand, within Psyr_0049 at 50.215 kb on - strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.368 kb on + strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.369 kb on - strand, within Psyr_0049 at 50.377 kb on - strand, within Psyr_0049 at 50.377 kb on - strand, within Psyr_0049 at 50.458 kb on + strand, within Psyr_0049 at 50.458 kb on + strand, within Psyr_0049 at 50.459 kb on - strand, within Psyr_0049 at 50.459 kb on - strand, within Psyr_0049 at 50.459 kb on - strand, within Psyr_0049 at 50.467 kb on + strand, within Psyr_0049 at 50.468 kb on - strand at 50.591 kb on - strand, within Psyr_0049 at 50.591 kb on - strand, within Psyr_0049 at 50.830 kb on + strand at 50.831 kb on - strand at 50.890 kb on + strand at 50.977 kb on - strand at 51.010 kb on - strand at 51.010 kb on - strand at 51.063 kb on + strand at 51.063 kb on + strand at 51.063 kb on + strand at 51.063 kb on + strand at 51.064 kb on - strand at 51.064 kb on - strand at 51.100 kb on + strand at 51.101 kb on - strand at 51.299 kb on - strand, within Psyr_0050 at 51.299 kb on - strand, within Psyr_0050 at 51.434 kb on + strand, within Psyr_0050 at 51.434 kb on + strand, within Psyr_0050 at 51.456 kb on + strand, within Psyr_0050 at 51.456 kb on + strand, within Psyr_0050 at 51.457 kb on - strand, within Psyr_0050 at 51.544 kb on + strand, within Psyr_0050 at 51.544 kb on + strand, within Psyr_0050 at 51.544 kb on + strand, within Psyr_0050 at 51.553 kb on + strand, within Psyr_0050 at 51.553 kb on + strand, within Psyr_0050 at 51.554 kb on - strand, within Psyr_0050 at 51.752 kb on + strand at 51.753 kb on - strand at 51.833 kb on + strand at 51.833 kb on + strand at 51.866 kb on + strand at 51.866 kb on + strand at 51.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 48,175 + Psyr_0046 0.82 -0.9 48,175 + Psyr_0046 0.82 -0.3 48,175 + Psyr_0046 0.82 -1.2 48,175 + Psyr_0046 0.82 -1.4 48,176 - Psyr_0046 0.82 -0.6 48,176 - Psyr_0046 0.82 -0.0 48,176 - Psyr_0046 0.82 -0.9 48,176 - Psyr_0046 0.82 -1.8 48,226 - -1.1 48,235 + +0.1 48,235 + -1.2 48,235 + -0.6 48,235 + -0.2 48,236 - -1.1 48,236 - -0.6 48,236 - -0.4 48,236 - -0.2 48,236 - +0.9 48,236 - -0.7 48,240 - +1.2 48,270 + +0.7 48,270 + +0.1 48,270 + -1.4 48,270 + +0.3 48,271 - -1.2 48,271 - -0.1 48,273 + -0.0 48,273 + +0.8 48,273 + -0.4 48,273 + -0.6 48,273 + +0.1 48,273 + -0.4 48,273 + -0.6 48,274 - -0.4 48,274 - -0.2 48,274 - -0.7 48,277 + -0.1 48,277 + -0.2 48,348 + Psyr_0047 0.25 +1.0 48,348 + Psyr_0047 0.25 -1.8 48,349 - Psyr_0047 0.25 +3.1 48,368 + Psyr_0047 0.32 +0.3 48,368 + Psyr_0047 0.32 +0.9 48,368 + Psyr_0047 0.32 +0.2 48,369 - Psyr_0047 0.32 -0.4 48,369 - Psyr_0047 0.32 +0.3 48,447 + Psyr_0047 0.58 -0.6 48,447 + Psyr_0047 0.58 +0.7 48,447 + Psyr_0047 0.58 +1.9 48,448 - Psyr_0047 0.58 -0.8 48,448 - Psyr_0047 0.58 -1.4 48,448 - Psyr_0047 0.58 -0.5 48,448 - Psyr_0047 0.58 +0.0 48,448 - Psyr_0047 0.58 +0.8 48,448 - Psyr_0047 0.58 +1.0 48,448 - Psyr_0047 0.58 -1.1 48,451 + Psyr_0047 0.59 -1.4 48,464 + Psyr_0047 0.63 -1.3 48,465 - Psyr_0047 0.64 -0.2 48,468 + Psyr_0047 0.65 +0.4 48,468 + Psyr_0047 0.65 +0.2 48,468 + Psyr_0047 0.65 +1.1 48,468 + Psyr_0047 0.65 +0.6 48,468 + Psyr_0047 0.65 +0.2 48,469 - Psyr_0047 0.65 +1.8 48,469 - Psyr_0047 0.65 -0.0 48,469 - Psyr_0047 0.65 +0.8 48,469 - Psyr_0047 0.65 -0.5 48,512 + Psyr_0047 0.79 +1.1 48,523 + Psyr_0047 0.83 -0.8 48,568 + +0.5 48,568 + +0.0 48,569 - -1.2 48,592 - -1.9 48,635 + +0.5 48,635 + +1.7 48,635 + +0.6 48,636 - +0.2 48,636 - -1.8 48,636 - +0.5 48,636 - -0.5 48,669 + +1.2 48,834 - Psyr_0048 0.72 +0.2 48,885 + +0.4 48,885 + +0.4 48,886 - -0.2 48,886 - +0.3 48,886 - +0.3 48,886 - +0.8 48,886 - +0.9 48,886 - +1.2 48,959 + +0.7 48,959 + -0.2 48,959 + +0.7 48,960 - +0.9 48,960 - -0.5 48,960 - -0.7 49,026 - +0.9 49,029 + +0.8 49,045 + -0.7 49,046 - -0.9 49,052 + +0.8 49,052 + -1.2 49,052 + -0.9 49,052 + -0.7 49,053 - +1.1 49,053 - +0.0 49,053 - +1.5 49,058 + +0.1 49,058 + +1.0 49,058 + +0.0 49,059 - -0.2 49,059 - +0.8 49,059 - +1.7 49,059 - +0.6 49,159 + -0.1 49,159 + -0.3 49,159 + -0.0 49,208 - -0.4 49,270 - +0.5 49,489 + Psyr_0049 0.20 -2.4 49,490 - Psyr_0049 0.20 -0.2 49,490 - Psyr_0049 0.20 -0.1 49,588 + Psyr_0049 0.25 -0.7 49,588 + Psyr_0049 0.25 +0.8 49,589 - Psyr_0049 0.25 -0.8 49,589 - Psyr_0049 0.25 -0.4 49,589 - Psyr_0049 0.25 -0.5 49,589 - Psyr_0049 0.25 -0.4 49,717 + Psyr_0049 0.32 -0.9 49,717 + Psyr_0049 0.32 -1.9 49,717 + Psyr_0049 0.32 -0.9 49,717 + Psyr_0049 0.32 -0.9 49,717 + Psyr_0049 0.32 -0.0 49,717 + Psyr_0049 0.32 -0.8 49,718 - Psyr_0049 0.32 +0.2 49,718 - Psyr_0049 0.32 +0.5 49,718 - Psyr_0049 0.32 -1.7 49,888 + Psyr_0049 0.41 -0.5 49,888 + Psyr_0049 0.41 +0.7 49,888 + Psyr_0049 0.41 -0.2 49,888 + Psyr_0049 0.41 +0.6 49,888 + Psyr_0049 0.41 -0.2 49,889 - Psyr_0049 0.41 +0.5 49,889 - Psyr_0049 0.41 -0.1 49,889 - Psyr_0049 0.41 -1.5 49,889 - Psyr_0049 0.41 +0.2 49,889 - Psyr_0049 0.41 -0.1 49,889 - Psyr_0049 0.41 +0.5 49,889 - Psyr_0049 0.41 +0.8 50,101 + Psyr_0049 0.52 -1.4 50,101 + Psyr_0049 0.52 +0.3 50,102 - Psyr_0049 0.52 +0.4 50,122 + Psyr_0049 0.53 -1.5 50,122 + Psyr_0049 0.53 -0.5 50,123 - Psyr_0049 0.53 -0.8 50,149 + Psyr_0049 0.55 +0.5 50,150 - Psyr_0049 0.55 +0.1 50,176 - Psyr_0049 0.56 +0.4 50,185 + Psyr_0049 0.57 -1.3 50,186 - Psyr_0049 0.57 -0.5 50,186 - Psyr_0049 0.57 -0.3 50,186 - Psyr_0049 0.57 -0.2 50,186 - Psyr_0049 0.57 -0.9 50,214 + Psyr_0049 0.58 +0.5 50,214 + Psyr_0049 0.58 -0.0 50,214 + Psyr_0049 0.58 +0.8 50,214 + Psyr_0049 0.58 -0.6 50,215 - Psyr_0049 0.58 +0.5 50,215 - Psyr_0049 0.58 +0.9 50,368 + Psyr_0049 0.66 +0.6 50,368 + Psyr_0049 0.66 -1.2 50,368 + Psyr_0049 0.66 +0.7 50,368 + Psyr_0049 0.66 +0.4 50,368 + Psyr_0049 0.66 +0.0 50,368 + Psyr_0049 0.66 +0.9 50,368 + Psyr_0049 0.66 -1.0 50,368 + Psyr_0049 0.66 -1.3 50,368 + Psyr_0049 0.66 +0.6 50,368 + Psyr_0049 0.66 -1.5 50,368 + Psyr_0049 0.66 +1.1 50,368 + Psyr_0049 0.66 +0.8 50,368 + Psyr_0049 0.66 +1.0 50,368 + Psyr_0049 0.66 -0.5 50,368 + Psyr_0049 0.66 +0.1 50,368 + Psyr_0049 0.66 -0.5 50,368 + Psyr_0049 0.66 +0.3 50,368 + Psyr_0049 0.66 -0.1 50,368 + Psyr_0049 0.66 -0.1 50,368 + Psyr_0049 0.66 +1.3 50,368 + Psyr_0049 0.66 -0.1 50,368 + Psyr_0049 0.66 -0.1 50,368 + Psyr_0049 0.66 -0.8 50,369 - Psyr_0049 0.66 -0.3 50,369 - Psyr_0049 0.66 +0.4 50,369 - Psyr_0049 0.66 +0.2 50,369 - Psyr_0049 0.66 +0.8 50,369 - Psyr_0049 0.66 +1.2 50,369 - Psyr_0049 0.66 +0.7 50,369 - Psyr_0049 0.66 +0.1 50,369 - Psyr_0049 0.66 -1.4 50,369 - Psyr_0049 0.66 -1.6 50,369 - Psyr_0049 0.66 -1.3 50,369 - Psyr_0049 0.66 +0.2 50,369 - Psyr_0049 0.66 -0.8 50,369 - Psyr_0049 0.66 +0.2 50,369 - Psyr_0049 0.66 -0.5 50,369 - Psyr_0049 0.66 +1.8 50,369 - Psyr_0049 0.66 -0.3 50,369 - Psyr_0049 0.66 -0.1 50,369 - Psyr_0049 0.66 +0.3 50,369 - Psyr_0049 0.66 -0.2 50,377 - Psyr_0049 0.67 +0.4 50,377 - Psyr_0049 0.67 -0.4 50,458 + Psyr_0049 0.71 +0.2 50,458 + Psyr_0049 0.71 -1.4 50,459 - Psyr_0049 0.71 +0.0 50,459 - Psyr_0049 0.71 +0.0 50,459 - Psyr_0049 0.71 -0.2 50,467 + Psyr_0049 0.71 +0.4 50,468 - +0.9 50,591 - Psyr_0049 0.78 +0.1 50,591 - Psyr_0049 0.78 -0.1 50,830 + +0.8 50,831 - +0.1 50,890 + -1.1 50,977 - -1.1 51,010 - -1.1 51,010 - +0.9 51,063 + -0.3 51,063 + +0.1 51,063 + -0.8 51,063 + +0.8 51,064 - -1.7 51,064 - +0.4 51,100 + +1.5 51,101 - -0.7 51,299 - Psyr_0050 0.21 +0.8 51,299 - Psyr_0050 0.21 +0.3 51,434 + Psyr_0050 0.42 -0.1 51,434 + Psyr_0050 0.42 -0.2 51,456 + Psyr_0050 0.46 -0.2 51,456 + Psyr_0050 0.46 -0.1 51,457 - Psyr_0050 0.46 +0.3 51,544 + Psyr_0050 0.60 -1.7 51,544 + Psyr_0050 0.60 -0.1 51,544 + Psyr_0050 0.60 +0.2 51,553 + Psyr_0050 0.61 +0.1 51,553 + Psyr_0050 0.61 -0.2 51,554 - Psyr_0050 0.61 -0.9 51,752 + +0.7 51,753 - -1.5 51,833 + +0.2 51,833 + +0.5 51,866 + +0.8 51,866 + -0.5 51,867 - -0.2
Or see this region's nucleotide sequence