Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_885

Experiment: Nalidixic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.004 mg/ml
1,007,683	+		Pf1N1B4_883	0.75	-0.4
1,007,819	+				+1.1
1,007,819	+				-1.3
1,007,819	+				-0.1
1,007,819	+				+1.4
1,007,820	-				+0.5
1,007,820	-				-0.9
1,007,955	-				+0.4
1,007,955	-				+3.4
1,008,069	+		Pf1N1B4_884	0.16	-0.2
1,008,069	+				-0.9
1,008,069	+		Pf1N1B4_884	0.16	+1.9
1,008,069	+		Pf1N1B4_884	0.16	-0.6
1,008,070	-		Pf1N1B4_884	0.16	+0.3
1,008,080	-		Pf1N1B4_884	0.18	+0.3
1,008,094	-		Pf1N1B4_884	0.21	+0.8
1,008,273	+		Pf1N1B4_884	0.53	+1.8
1,008,273	+				+0.5
1,008,273	+		Pf1N1B4_884	0.53	+0.1
1,008,274	-		Pf1N1B4_884	0.53	+0.9
1,008,274	-		Pf1N1B4_884	0.53	+0.1
1,008,274	-		Pf1N1B4_884	0.53	-0.3
1,008,274	-		Pf1N1B4_884	0.53	-0.5
1,008,274	-		Pf1N1B4_884	0.53	-1.3
1,008,277	+		Pf1N1B4_884	0.54	-1.0
1,008,277	+		Pf1N1B4_884	0.54	+0.8
1,008,277	+		Pf1N1B4_884	0.54	+0.0
1,008,277	+		Pf1N1B4_884	0.54	+0.1
1,008,277	+		Pf1N1B4_884	0.54	-1.5
1,008,277	+		Pf1N1B4_884	0.54	-0.9
1,008,277	+		Pf1N1B4_884	0.54	+0.5
1,008,277	+		Pf1N1B4_884	0.54	-0.8
1,008,277	+		Pf1N1B4_884	0.54	+1.1
1,008,277	+		Pf1N1B4_884	0.54	+0.1
1,008,278	-		Pf1N1B4_884	0.54	+1.7
1,008,278	-		Pf1N1B4_884	0.54	-0.3
1,008,278	-		Pf1N1B4_884	0.54	+0.1
1,008,278	-		Pf1N1B4_884	0.54	+0.1
1,008,278	-		Pf1N1B4_884	0.54	+1.1
1,008,279	+		Pf1N1B4_884	0.54	+0.9
1,008,279	+		Pf1N1B4_884	0.54	+1.5
1,008,279	+		Pf1N1B4_884	0.54	+0.7
1,008,438	+		Pf1N1B4_884	0.83	-0.1
1,008,443	+		Pf1N1B4_884	0.84	+0.6
1,008,443	+		Pf1N1B4_884	0.84	-0.1
1,008,443	+		Pf1N1B4_884	0.84	-0.2
1,008,443	+		Pf1N1B4_884	0.84	+1.9
1,008,443	+		Pf1N1B4_884	0.84	-0.7
1,008,443	+		Pf1N1B4_884	0.84	-0.1
1,008,443	+		Pf1N1B4_884	0.84	+0.3
1,008,444	-		Pf1N1B4_884	0.84	+1.2
1,008,444	-		Pf1N1B4_884	0.84	+2.3
1,008,444	-		Pf1N1B4_884	0.84	-1.8
1,008,444	-		Pf1N1B4_884	0.84	+1.4
1,008,444	-		Pf1N1B4_884	0.84	+2.6
1,008,478	+				+0.1
1,008,529	+				-0.5
1,008,529	+				-0.0
1,008,529	+				+0.4
1,008,530	-				+0.3
1,008,530	-				+1.3
1,008,530	-				+1.1
1,008,538	+				-0.1
1,008,539	-				+2.1
1,008,539	-				+1.9
1,008,544	+				-0.1
1,008,544	+				+0.3
1,008,544	+				+1.2
1,008,544	+				-0.9
1,008,544	+				-0.9
1,008,544	+				-0.2
1,008,544	+				-0.3
1,008,544	+				+1.2
1,008,544	+				+0.2
1,008,545	-				+1.6
1,008,545	-				+0.1
1,008,545	-				-1.1
1,008,545	-				+0.1
1,008,545	-				+0.6
1,008,545	-				+1.3
1,008,554	+				+0.5
1,008,554	+				-0.5
1,008,555	-				+0.6
1,008,555	-				+0.3
1,008,556	+				-1.3
1,008,561	+				-2.3
1,008,561	+				-0.5
1,008,561	+				-1.4
1,008,562	-				-0.3
1,008,562	-				-0.9
1,008,562	-				-0.3
1,008,828	+		Pf1N1B4_885	0.46	+1.3
1,008,828	+		Pf1N1B4_885	0.46	+0.1
1,008,828	+		Pf1N1B4_885	0.46	-0.4
1,008,828	+		Pf1N1B4_885	0.46	+0.5
1,008,828	+		Pf1N1B4_885	0.46	+1.4
1,008,828	+		Pf1N1B4_885	0.46	-0.9
1,008,998	+		Pf1N1B4_885	0.80	+1.4
1,008,999	-		Pf1N1B4_885	0.80	+1.7
1,009,103	+				-1.9
1,009,110	+				+0.4
1,009,110	+				-1.5
1,009,110	+				-1.3
1,009,111	-				-0.5
1,009,111	-				-1.0
1,009,111	-				+0.4
1,009,111	-				-0.4
1,009,111	-				+1.2
1,009,111	-				+1.1
1,009,111	-				+0.5
1,009,112	+				+0.1
1,009,112	+				-0.2
1,009,112	+				+0.4
1,009,112	+				+1.1
1,009,112	+				-0.4
1,009,113	-				+0.5
1,009,113	-				-0.9
1,009,113	-				+0.2
1,009,113	-				-0.4
1,009,113	-				-0.4
1,009,163	+				-1.5
1,009,163	+				-0.9
1,009,163	+				-0.5
1,009,163	+				+0.1
1,009,163	+				-2.3
1,009,163	+				+0.2
1,009,163	+				+0.5
1,009,163	+				-0.6
1,009,163	+				-0.9
1,009,164	-				+1.7
1,009,164	-				+0.1
1,009,164	-				-1.1
1,009,164	-				+0.1
1,009,164	-				+1.4
1,009,164	-				+2.4
1,009,164	-				-1.5
1,009,164	-				+1.1
1,009,164	-				-0.5
1,009,164	-				+0.2
1,009,164	-				-0.3
1,009,164	-				-0.4
1,009,164	-				+0.5
1,009,164	-				-0.2
1,009,174	+				-1.4
1,009,174	+				+0.6
1,009,174	+				+0.1
1,009,174	+				-2.0
1,009,174	+				-1.6
1,009,174	+				+0.1
1,009,174	+				+0.9
1,009,174	+				-0.2
1,009,174	+				-0.3
1,009,174	+				-2.1
1,009,174	+				+1.3
1,009,174	+				-0.5
1,009,175	-				-0.9
1,009,175	-				-1.3
1,009,175	-				-1.3
1,009,175	-				+1.4
1,009,175	-				-0.9
1,009,175	-				+1.1
1,009,175	-				+0.6
1,009,175	-				+0.5
1,009,175	-				+0.2
1,009,175	-				-0.1
1,009,175	-				+1.5
1,009,175	-				+1.5
1,009,178	+				+0.6
1,009,178	+				+0.1
1,009,179	-				+1.1
1,009,179	-				-1.1
1,009,179	-				+0.1
1,009,179	-				-0.2
1,009,276	-				+1.1
1,009,309	-				+1.1
1,009,334	+				+0.5
1,009,368	-				+0.1
1,009,370	+				+1.6
1,009,371	-				-0.9
1,009,371	-				-0.4
1,009,371	-				+0.3
1,009,387	-				-0.8
1,009,387	-				-0.5
1,009,387	-				-1.3
1,009,387	-				-1.5
1,009,437	+				+0.8
1,009,437	+				-1.3
1,009,437	+				-1.5
1,009,438	-				+1.1
1,009,438	-				+0.6
1,009,438	-				-0.5
1,009,438	-				-0.6
1,009,450	+				+1.1
1,009,451	-				-0.4
1,009,451	-				+0.2
1,009,454	+				-3.5
1,009,464	+				+0.2
1,009,464	+				-1.6
1,009,464	+				-0.5
1,009,464	+				+0.1
1,009,464	+				-1.3
1,009,464	+				+0.1
1,009,464	+				-0.3
1,009,465	-				+0.1
1,009,465	-				-0.5
1,009,465	-				+0.1
1,009,465	-				+0.5
1,009,465	-				-0.7
1,009,465	-				-0.6
1,009,465	-				-0.5
1,009,465	-				-0.9
1,009,465	-				+1.1
1,009,516	+				+0.5
1,009,516	+				+0.1
1,009,516	+				+0.5
1,009,517	-				-0.5
1,009,517	-				-1.3
1,009,520	+				-1.1
1,009,520	+				+0.6
1,009,520	+				-1.3
1,009,520	+				-0.5
1,009,520	+				+0.1
1,009,521	-				+0.2
1,009,521	-				-0.5
1,009,521	-				-0.5
1,009,521	-				-0.4
1,009,521	-				-1.1
1,009,521	-				-0.9
1,009,521	-				+0.8
1,009,558	-				-0.9
1,009,558	-				+1.1
1,009,566	+				+1.8
1,009,622	+				+0.9
1,009,623	-				+0.2
1,009,638	+				+0.1
1,009,660	+				-0.8
1,009,660	+				-1.3
1,009,660	+				+1.1
1,009,660	+				+0.4
1,009,660	+				+0.6
1,009,660	+				+1.1
1,009,660	+				-0.3
1,009,660	+				+1.5
1,009,660	+				-0.8
1,009,661	-				+0.1
1,009,663	+				+2.1
1,009,677	+				+0.3
1,009,677	+				+0.6
1,009,677	+				+0.6
1,009,677	+				+1.1
1,009,677	+				-0.4
1,009,677	+				+1.6
1,009,677	+				+0.1
1,009,677	+				+0.1
1,009,678	-				-0.3
1,009,678	-				+0.3
1,009,678	-				-0.5
1,009,678	-				+0.1
1,009,678	-				+0.2
1,009,678	-				+1.4
1,009,678	-				-1.3
1,009,678	-				+0.1
1,009,679	+				-0.2
1,009,679	+				+0.1
1,009,679	+				+0.2
1,009,680	-				+0.8
1,009,680	-				-0.0
1,009,686	+				+0.1
1,009,687	-				-1.9
1,009,715	+				-1.3
1,009,715	+				-0.4
1,009,715	+				-2.8
1,009,715	+				-0.3
1,009,715	+				-0.6
1,009,715	+				+2.6
1,009,715	+				+0.1
1,009,715	+				-0.8
1,009,716	-				+1.9
1,009,716	-				+0.7
1,009,716	-				+0.2
1,009,716	-				-0.5
1,009,716	-				-0.5
1,009,716	-				+0.6
1,009,722	+				+1.3
1,009,723	-				+0.7
1,009,772	+				+0.4
1,009,772	+				-0.7
1,009,772	+				+0.5
1,009,772	+				+0.9
1,009,772	+				+0.3
1,009,772	+				+0.7
1,009,773	-				-0.1
1,009,925	+				-0.3
1,009,932	+				+0.2