Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6039 and Pf1N1B4_6040 are separated by 74 nucleotides Pf1N1B4_6040 and Pf1N1B4_6041 are separated by 249 nucleotides Pf1N1B4_6041 and Pf1N1B4_6042 are separated by 194 nucleotides Pf1N1B4_6042 and Pf1N1B4_6043 are separated by 113 nucleotides
Pf1N1B4_6039 - Endonuclease I precursor (EC 3.1.21.1), at 503,014 to 503,703
_6039
Pf1N1B4_6040 - FIG00956858: hypothetical protein, at 503,778 to 504,143
_6040
Pf1N1B4_6041 - Carbon storage regulator, at 504,393 to 504,587
_6041
Pf1N1B4_6042 - Probable transmembrane protein, at 504,782 to 505,237
_6042
Pf1N1B4_6043 - membrane protein, putative, at 505,351 to 506,565
_6043
Position (kb) 504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 503.437 kb on + strand, within Pf1N1B4_6039 at 503.521 kb on + strand, within Pf1N1B4_6039 at 503.522 kb on - strand, within Pf1N1B4_6039 at 503.522 kb on - strand, within Pf1N1B4_6039 at 503.522 kb on - strand, within Pf1N1B4_6039 at 503.522 kb on - strand, within Pf1N1B4_6039 at 503.527 kb on + strand, within Pf1N1B4_6039 at 503.528 kb on - strand, within Pf1N1B4_6039 at 503.528 kb on - strand, within Pf1N1B4_6039 at 503.528 kb on - strand, within Pf1N1B4_6039 at 503.535 kb on + strand, within Pf1N1B4_6039 at 503.535 kb on + strand, within Pf1N1B4_6039 at 503.578 kb on + strand, within Pf1N1B4_6039 at 503.578 kb on + strand, within Pf1N1B4_6039 at 503.579 kb on - strand at 503.579 kb on - strand, within Pf1N1B4_6039 at 503.592 kb on + strand, within Pf1N1B4_6039 at 503.599 kb on + strand, within Pf1N1B4_6039 at 503.600 kb on - strand, within Pf1N1B4_6039 at 503.889 kb on - strand, within Pf1N1B4_6040 at 503.889 kb on - strand, within Pf1N1B4_6040 at 503.948 kb on + strand at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 503.949 kb on - strand, within Pf1N1B4_6040 at 504.115 kb on - strand at 504.115 kb on - strand at 504.251 kb on - strand at 504.251 kb on - strand at 504.252 kb on + strand at 504.252 kb on + strand at 504.252 kb on + strand at 504.252 kb on + strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.253 kb on - strand at 504.257 kb on - strand at 504.271 kb on - strand at 504.271 kb on - strand at 504.324 kb on - strand at 504.324 kb on - strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.328 kb on + strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.329 kb on - strand at 504.331 kb on - strand at 504.331 kb on - strand at 504.334 kb on + strand at 504.334 kb on + strand at 504.334 kb on + strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.335 kb on - strand at 504.369 kb on + strand at 504.370 kb on - strand at 504.400 kb on + strand at 504.427 kb on + strand, within Pf1N1B4_6041 at 504.428 kb on - strand, within Pf1N1B4_6041 at 504.446 kb on + strand, within Pf1N1B4_6041 at 504.447 kb on - strand, within Pf1N1B4_6041 at 504.711 kb on - strand at 504.854 kb on - strand, within Pf1N1B4_6042 at 504.872 kb on + strand at 504.873 kb on - strand, within Pf1N1B4_6042 at 504.873 kb on - strand, within Pf1N1B4_6042 at 504.873 kb on - strand, within Pf1N1B4_6042 at 505.015 kb on - strand, within Pf1N1B4_6042 at 505.015 kb on - strand, within Pf1N1B4_6042 at 505.018 kb on - strand, within Pf1N1B4_6042 at 505.018 kb on - strand, within Pf1N1B4_6042 at 505.018 kb on - strand, within Pf1N1B4_6042 at 505.152 kb on - strand, within Pf1N1B4_6042 at 505.152 kb on - strand, within Pf1N1B4_6042 at 505.244 kb on - strand at 505.244 kb on - strand at 505.244 kb on - strand at 505.244 kb on - strand at 505.244 kb on - strand at 505.244 kb on - strand at 505.251 kb on - strand at 505.273 kb on + strand at 505.273 kb on + strand at 505.274 kb on - strand at 505.274 kb on - strand at 505.274 kb on - strand at 505.274 kb on - strand at 505.278 kb on + strand at 505.281 kb on + strand at 505.281 kb on + strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.282 kb on - strand at 505.297 kb on - strand at 505.297 kb on - strand at 505.297 kb on - strand at 505.297 kb on - strand at 505.363 kb on + strand at 505.364 kb on - strand at 505.364 kb on - strand at 505.378 kb on - strand at 505.378 kb on - strand at 505.378 kb on - strand at 505.378 kb on - strand at 505.580 kb on - strand, within Pf1N1B4_6043
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 503,437 + Pf1N1B4_6039 0.61 -0.2 503,521 + Pf1N1B4_6039 0.73 -2.0 503,522 - Pf1N1B4_6039 0.74 -2.2 503,522 - Pf1N1B4_6039 0.74 -1.7 503,522 - Pf1N1B4_6039 0.74 -0.1 503,522 - Pf1N1B4_6039 0.74 -0.4 503,527 + Pf1N1B4_6039 0.74 +0.5 503,528 - Pf1N1B4_6039 0.74 +0.6 503,528 - Pf1N1B4_6039 0.74 +0.3 503,528 - Pf1N1B4_6039 0.74 -0.1 503,535 + Pf1N1B4_6039 0.76 -0.3 503,535 + Pf1N1B4_6039 0.76 +0.0 503,578 + Pf1N1B4_6039 0.82 -0.8 503,578 + Pf1N1B4_6039 0.82 -1.7 503,579 - -0.7 503,579 - Pf1N1B4_6039 0.82 -0.5 503,592 + Pf1N1B4_6039 0.84 -2.4 503,599 + Pf1N1B4_6039 0.85 +1.3 503,600 - Pf1N1B4_6039 0.85 -1.0 503,889 - Pf1N1B4_6040 0.30 +1.6 503,889 - Pf1N1B4_6040 0.30 +0.1 503,948 + -0.2 503,949 - Pf1N1B4_6040 0.47 -2.0 503,949 - -0.4 503,949 - Pf1N1B4_6040 0.47 -2.0 503,949 - Pf1N1B4_6040 0.47 -1.6 503,949 - Pf1N1B4_6040 0.47 +1.2 503,949 - Pf1N1B4_6040 0.47 +0.7 503,949 - Pf1N1B4_6040 0.47 -0.4 503,949 - Pf1N1B4_6040 0.47 -0.4 503,949 - Pf1N1B4_6040 0.47 +0.1 503,949 - Pf1N1B4_6040 0.47 +0.6 504,115 - -1.2 504,115 - +0.1 504,251 - -1.2 504,251 - +1.2 504,252 + -1.0 504,252 + +1.0 504,252 + +0.6 504,252 + -2.2 504,253 - -1.0 504,253 - -1.7 504,253 - +0.4 504,253 - -1.0 504,253 - +0.2 504,253 - -0.4 504,253 - -0.4 504,253 - +0.6 504,257 - +0.4 504,271 - -0.1 504,271 - -1.8 504,324 - +2.9 504,324 - -0.4 504,328 + +1.0 504,328 + +0.0 504,328 + -1.7 504,328 + +1.4 504,328 + +0.6 504,328 + -1.4 504,328 + -0.7 504,328 + +1.0 504,329 - -1.4 504,329 - +0.9 504,329 - -1.0 504,329 - +0.6 504,329 - +0.2 504,329 - +0.0 504,331 - -0.4 504,331 - -0.5 504,334 + +0.7 504,334 + +0.2 504,334 + +0.5 504,335 - -1.4 504,335 - -0.5 504,335 - +0.0 504,335 - -0.7 504,335 - +0.6 504,335 - -2.1 504,335 - -1.5 504,335 - -0.4 504,369 + -0.3 504,370 - -1.1 504,400 + -1.7 504,427 + Pf1N1B4_6041 0.17 -1.2 504,428 - Pf1N1B4_6041 0.18 -1.4 504,446 + Pf1N1B4_6041 0.27 -1.0 504,447 - Pf1N1B4_6041 0.28 -1.0 504,711 - -0.2 504,854 - Pf1N1B4_6042 0.16 +0.8 504,872 + -1.0 504,873 - Pf1N1B4_6042 0.20 -1.2 504,873 - Pf1N1B4_6042 0.20 -3.0 504,873 - Pf1N1B4_6042 0.20 +0.1 505,015 - Pf1N1B4_6042 0.51 +1.6 505,015 - Pf1N1B4_6042 0.51 +0.2 505,018 - Pf1N1B4_6042 0.52 +0.4 505,018 - Pf1N1B4_6042 0.52 -0.4 505,018 - Pf1N1B4_6042 0.52 -1.0 505,152 - Pf1N1B4_6042 0.81 -1.7 505,152 - Pf1N1B4_6042 0.81 +1.2 505,244 - +1.6 505,244 - -0.4 505,244 - +0.8 505,244 - +0.8 505,244 - +0.6 505,244 - +0.6 505,251 - +0.6 505,273 + +0.0 505,273 + -0.1 505,274 - +0.6 505,274 - +3.4 505,274 - -1.0 505,274 - -0.7 505,278 + -0.2 505,281 + -0.7 505,281 + +0.9 505,282 - -0.2 505,282 - -2.5 505,282 - -1.0 505,282 - +0.4 505,282 - -1.0 505,282 - -1.0 505,297 - -1.2 505,297 - -2.0 505,297 - -0.1 505,297 - +1.0 505,363 + -2.0 505,364 - -0.4 505,364 - +0.0 505,378 - -2.2 505,378 - +0.9 505,378 - +0.4 505,378 - +0.1 505,580 - Pf1N1B4_6043 0.19 +0.3
Or see this region's nucleotide sequence