Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_6028

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_6025 and Pf1N1B4_6026 are separated by 72 nucleotidesPf1N1B4_6026 and Pf1N1B4_6027 are separated by 165 nucleotidesPf1N1B4_6027 and Pf1N1B4_6028 are separated by 131 nucleotidesPf1N1B4_6028 and Pf1N1B4_6029 are separated by 38 nucleotides Pf1N1B4_6025 - Cold shock protein CspG, at 492,049 to 492,261 _6025 Pf1N1B4_6026 - lipoprotein, putative, at 492,334 to 492,651 _6026 Pf1N1B4_6027 - FIG00955358: hypothetical protein, at 492,817 to 493,122 _6027 Pf1N1B4_6028 - FIG00954052: hypothetical protein, at 493,254 to 493,460 _6028 Pf1N1B4_6029 - uridine nucleosidase (EC 3.2.2.3) (from data), at 493,499 to 494,527 _6029 Position (kb) 493 494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 492.259 kb on + strandat 492.260 kb on - strandat 492.586 kb on - strand, within Pf1N1B4_6026at 492.586 kb on - strand, within Pf1N1B4_6026at 492.586 kb on - strand, within Pf1N1B4_6026at 492.671 kb on - strandat 492.674 kb on + strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.821 kb on + strandat 492.822 kb on - strandat 492.822 kb on - strandat 492.822 kb on - strandat 492.834 kb on - strandat 492.834 kb on - strandat 492.924 kb on - strand, within Pf1N1B4_6027at 492.924 kb on - strand, within Pf1N1B4_6027at 492.990 kb on + strand, within Pf1N1B4_6027at 492.991 kb on - strand, within Pf1N1B4_6027at 493.005 kb on - strand, within Pf1N1B4_6027at 493.005 kb on - strand, within Pf1N1B4_6027at 493.164 kb on - strandat 493.182 kb on - strandat 493.182 kb on - strandat 493.182 kb on - strandat 493.182 kb on - strandat 493.264 kb on + strandat 493.314 kb on + strand, within Pf1N1B4_6028at 493.314 kb on + strand, within Pf1N1B4_6028at 493.353 kb on - strandat 493.422 kb on + strand, within Pf1N1B4_6028at 493.423 kb on - strandat 493.423 kb on - strand, within Pf1N1B4_6028at 493.434 kb on + strand, within Pf1N1B4_6028at 493.434 kb on + strand, within Pf1N1B4_6028at 493.434 kb on + strand, within Pf1N1B4_6028at 493.434 kb on + strand, within Pf1N1B4_6028at 493.435 kb on - strand, within Pf1N1B4_6028at 493.435 kb on - strandat 493.435 kb on - strand, within Pf1N1B4_6028at 493.435 kb on - strand, within Pf1N1B4_6028at 493.435 kb on - strand, within Pf1N1B4_6028at 493.436 kb on + strand, within Pf1N1B4_6028at 493.437 kb on - strand, within Pf1N1B4_6028at 493.500 kb on + strandat 493.501 kb on - strandat 493.501 kb on - strandat 493.501 kb on - strandat 493.501 kb on - strandat 493.600 kb on - strandat 493.600 kb on - strandat 493.652 kb on + strand, within Pf1N1B4_6029at 493.652 kb on + strand, within Pf1N1B4_6029at 493.653 kb on - strandat 493.696 kb on - strand, within Pf1N1B4_6029at 493.709 kb on - strand, within Pf1N1B4_6029at 493.764 kb on + strand, within Pf1N1B4_6029at 493.765 kb on - strand, within Pf1N1B4_6029at 493.765 kb on - strand, within Pf1N1B4_6029at 493.765 kb on - strand, within Pf1N1B4_6029at 493.875 kb on + strand, within Pf1N1B4_6029at 493.876 kb on - strand, within Pf1N1B4_6029at 494.118 kb on + strand, within Pf1N1B4_6029at 494.119 kb on - strand, within Pf1N1B4_6029at 494.119 kb on - strand, within Pf1N1B4_6029at 494.209 kb on - strand, within Pf1N1B4_6029at 494.209 kb on - strandat 494.209 kb on - strand, within Pf1N1B4_6029at 494.351 kb on - strand, within Pf1N1B4_6029

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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492,259 + -2.3
492,260 - +0.0
492,586 - Pf1N1B4_6026 0.79 -0.4
492,586 - Pf1N1B4_6026 0.79 +1.6
492,586 - Pf1N1B4_6026 0.79 -1.4
492,671 - +1.4
492,674 + -2.0
492,675 - -1.4
492,675 - -1.1
492,675 - -0.5
492,675 - -0.1
492,675 - -1.4
492,675 - -1.8
492,675 - +0.2
492,675 - +0.0
492,675 - -0.2
492,675 - -0.4
492,675 - +0.3
492,806 - -0.1
492,806 - -0.4
492,806 - -2.4
492,806 - +0.0
492,806 - +0.0
492,821 + +1.4
492,822 - -1.2
492,822 - -1.0
492,822 - +0.2
492,834 - -1.2
492,834 - -0.4
492,924 - Pf1N1B4_6027 0.35 +0.4
492,924 - Pf1N1B4_6027 0.35 -2.2
492,990 + Pf1N1B4_6027 0.57 +0.4
492,991 - Pf1N1B4_6027 0.57 +0.0
493,005 - Pf1N1B4_6027 0.61 -0.3
493,005 - Pf1N1B4_6027 0.61 +1.5
493,164 - -3.0
493,182 - +0.2
493,182 - +2.2
493,182 - +0.5
493,182 - +1.0
493,264 + +0.0
493,314 + Pf1N1B4_6028 0.29 -2.0
493,314 + Pf1N1B4_6028 0.29 -0.2
493,353 - -1.0
493,422 + Pf1N1B4_6028 0.81 -1.0
493,423 - +0.6
493,423 - Pf1N1B4_6028 0.82 -1.4
493,434 + Pf1N1B4_6028 0.87 -0.8
493,434 + Pf1N1B4_6028 0.87 -1.4
493,434 + Pf1N1B4_6028 0.87 +0.3
493,434 + Pf1N1B4_6028 0.87 -1.7
493,435 - Pf1N1B4_6028 0.87 -1.7
493,435 - -1.0
493,435 - Pf1N1B4_6028 0.87 -2.0
493,435 - Pf1N1B4_6028 0.87 -2.4
493,435 - Pf1N1B4_6028 0.87 +0.4
493,436 + Pf1N1B4_6028 0.88 -0.0
493,437 - Pf1N1B4_6028 0.88 -0.8
493,500 + +0.0
493,501 - -0.4
493,501 - -0.7
493,501 - -0.4
493,501 - +0.9
493,600 - +0.6
493,600 - -1.2
493,652 + Pf1N1B4_6029 0.15 +1.6
493,652 + Pf1N1B4_6029 0.15 -2.0
493,653 - +0.6
493,696 - Pf1N1B4_6029 0.19 +1.4
493,709 - Pf1N1B4_6029 0.20 +0.4
493,764 + Pf1N1B4_6029 0.26 +0.6
493,765 - Pf1N1B4_6029 0.26 +0.6
493,765 - Pf1N1B4_6029 0.26 -1.5
493,765 - Pf1N1B4_6029 0.26 +0.0
493,875 + Pf1N1B4_6029 0.37 -0.1
493,876 - Pf1N1B4_6029 0.37 -1.0
494,118 + Pf1N1B4_6029 0.60 -0.6
494,119 - Pf1N1B4_6029 0.60 +0.2
494,119 - Pf1N1B4_6029 0.60 +1.6
494,209 - Pf1N1B4_6029 0.69 +0.1
494,209 - +1.2
494,209 - Pf1N1B4_6029 0.69 -0.3
494,351 - Pf1N1B4_6029 0.83 +0.6

Or see this region's nucleotide sequence