Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5627 and Pf1N1B4_5628 overlap by 1 nucleotides Pf1N1B4_5628 and Pf1N1B4_5629 are separated by 14 nucleotides
Pf1N1B4_5627 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 54,260 to 55,321
_5627
Pf1N1B4_5628 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 55,321 to 56,343
_5628
Pf1N1B4_5629 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 56,358 to 57,932
_5629
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 54.662 kb on + strand, within Pf1N1B4_5627 at 54.663 kb on - strand at 54.891 kb on - strand, within Pf1N1B4_5627 at 55.400 kb on + strand at 55.486 kb on + strand, within Pf1N1B4_5628 at 55.487 kb on - strand, within Pf1N1B4_5628 at 55.564 kb on + strand, within Pf1N1B4_5628 at 55.584 kb on + strand, within Pf1N1B4_5628 at 55.643 kb on - strand, within Pf1N1B4_5628 at 55.892 kb on - strand, within Pf1N1B4_5628 at 56.023 kb on + strand, within Pf1N1B4_5628 at 56.024 kb on - strand, within Pf1N1B4_5628 at 56.024 kb on - strand, within Pf1N1B4_5628 at 56.024 kb on - strand, within Pf1N1B4_5628 at 56.765 kb on - strand, within Pf1N1B4_5629 at 57.096 kb on + strand, within Pf1N1B4_5629 at 57.096 kb on + strand, within Pf1N1B4_5629 at 57.097 kb on - strand, within Pf1N1B4_5629 at 57.098 kb on + strand, within Pf1N1B4_5629 at 57.099 kb on - strand, within Pf1N1B4_5629 at 57.099 kb on - strand, within Pf1N1B4_5629 at 57.099 kb on - strand, within Pf1N1B4_5629 at 57.106 kb on + strand, within Pf1N1B4_5629 at 57.107 kb on - strand, within Pf1N1B4_5629 at 57.110 kb on - strand, within Pf1N1B4_5629 at 57.229 kb on - strand, within Pf1N1B4_5629
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 54,662 + Pf1N1B4_5627 0.38 +1.0 54,663 - +0.6 54,891 - Pf1N1B4_5627 0.59 +1.2 55,400 + +0.6 55,486 + Pf1N1B4_5628 0.16 -2.4 55,487 - Pf1N1B4_5628 0.16 +0.4 55,564 + Pf1N1B4_5628 0.24 -1.0 55,584 + Pf1N1B4_5628 0.26 -1.2 55,643 - Pf1N1B4_5628 0.31 +1.7 55,892 - Pf1N1B4_5628 0.56 -1.0 56,023 + Pf1N1B4_5628 0.69 -0.7 56,024 - Pf1N1B4_5628 0.69 -0.0 56,024 - Pf1N1B4_5628 0.69 -1.5 56,024 - Pf1N1B4_5628 0.69 -0.4 56,765 - Pf1N1B4_5629 0.26 +0.6 57,096 + Pf1N1B4_5629 0.47 -1.7 57,096 + Pf1N1B4_5629 0.47 +1.4 57,097 - Pf1N1B4_5629 0.47 +0.1 57,098 + Pf1N1B4_5629 0.47 -0.2 57,099 - Pf1N1B4_5629 0.47 +0.6 57,099 - Pf1N1B4_5629 0.47 +0.6 57,099 - Pf1N1B4_5629 0.47 -0.9 57,106 + Pf1N1B4_5629 0.47 +0.9 57,107 - Pf1N1B4_5629 0.48 -1.2 57,110 - Pf1N1B4_5629 0.48 -2.0 57,229 - Pf1N1B4_5629 0.55 +0.1
Or see this region's nucleotide sequence