Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4711 and Pf1N1B4_4712 are separated by 3 nucleotides Pf1N1B4_4712 and Pf1N1B4_4713 are separated by 55 nucleotides
Pf1N1B4_4711 - hypothetical protein, at 5,207,898 to 5,209,475
_4711
Pf1N1B4_4712 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,209,479 to 5,209,952
_4712
Pf1N1B4_4713 - Xanthine permease, at 5,210,008 to 5,211,483
_4713
Position (kb)
5209
5210 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5208.570 kb on + strand, within Pf1N1B4_4711 at 5208.580 kb on + strand, within Pf1N1B4_4711 at 5208.893 kb on + strand, within Pf1N1B4_4711 at 5208.894 kb on - strand, within Pf1N1B4_4711 at 5209.186 kb on - strand at 5209.281 kb on + strand, within Pf1N1B4_4711 at 5209.411 kb on + strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.579 kb on + strand, within Pf1N1B4_4712 at 5209.579 kb on + strand, within Pf1N1B4_4712 at 5209.579 kb on + strand, within Pf1N1B4_4712 at 5209.580 kb on - strand, within Pf1N1B4_4712 at 5209.765 kb on + strand at 5210.021 kb on - strand at 5210.154 kb on + strand at 5210.155 kb on - strand at 5210.155 kb on - strand at 5210.236 kb on + strand, within Pf1N1B4_4713 at 5210.606 kb on + strand, within Pf1N1B4_4713 at 5210.606 kb on + strand, within Pf1N1B4_4713 at 5210.606 kb on + strand, within Pf1N1B4_4713 at 5210.606 kb on + strand, within Pf1N1B4_4713 at 5210.606 kb on + strand, within Pf1N1B4_4713 at 5210.607 kb on - strand, within Pf1N1B4_4713 at 5210.607 kb on - strand, within Pf1N1B4_4713 at 5210.607 kb on - strand at 5210.607 kb on - strand, within Pf1N1B4_4713 at 5210.607 kb on - strand, within Pf1N1B4_4713 at 5210.607 kb on - strand, within Pf1N1B4_4713
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 5,208,570 + Pf1N1B4_4711 0.43 -0.2 5,208,580 + Pf1N1B4_4711 0.43 -1.4 5,208,893 + Pf1N1B4_4711 0.63 -0.9 5,208,894 - Pf1N1B4_4711 0.63 -2.4 5,209,186 - -1.6 5,209,281 + Pf1N1B4_4711 0.88 +1.4 5,209,411 + -0.2 5,209,412 - -0.6 5,209,412 - +2.7 5,209,412 - -1.6 5,209,412 - -0.6 5,209,412 - -1.4 5,209,412 - -0.1 5,209,412 - +1.4 5,209,579 + Pf1N1B4_4712 0.21 -0.2 5,209,579 + Pf1N1B4_4712 0.21 -1.2 5,209,579 + Pf1N1B4_4712 0.21 +0.5 5,209,580 - Pf1N1B4_4712 0.21 +1.4 5,209,765 + -0.6 5,210,021 - +0.4 5,210,154 + -0.0 5,210,155 - -0.6 5,210,155 - -0.0 5,210,236 + Pf1N1B4_4713 0.15 +0.4 5,210,606 + Pf1N1B4_4713 0.41 +0.2 5,210,606 + Pf1N1B4_4713 0.41 -0.9 5,210,606 + Pf1N1B4_4713 0.41 +1.4 5,210,606 + Pf1N1B4_4713 0.41 +0.7 5,210,606 + Pf1N1B4_4713 0.41 -0.1 5,210,607 - Pf1N1B4_4713 0.41 -1.5 5,210,607 - Pf1N1B4_4713 0.41 -0.5 5,210,607 - +0.4 5,210,607 - Pf1N1B4_4713 0.41 +0.7 5,210,607 - Pf1N1B4_4713 0.41 -2.2 5,210,607 - Pf1N1B4_4713 0.41 +0.7
Or see this region's nucleotide sequence