Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4620 and Pf1N1B4_4621 are separated by 186 nucleotides Pf1N1B4_4621 and Pf1N1B4_4622 are separated by 194 nucleotides
Pf1N1B4_4620 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 5,095,299 to 5,096,015
_4620
Pf1N1B4_4621 - L-arabonate dehydratase (EC 4.2.1.25), at 5,096,202 to 5,097,938
_4621
Pf1N1B4_4622 - Nitrate/nitrite transporter, at 5,098,133 to 5,099,455
_4622
Position (kb) 5096
5097
5098 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5095.211 kb on - strand at 5095.609 kb on + strand at 5096.087 kb on + strand at 5096.087 kb on + strand at 5096.140 kb on - strand at 5096.178 kb on - strand at 5096.294 kb on - strand at 5096.319 kb on + strand at 5096.320 kb on - strand at 5096.320 kb on - strand at 5096.680 kb on + strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.681 kb on - strand, within Pf1N1B4_4621 at 5096.978 kb on - strand, within Pf1N1B4_4621 at 5097.214 kb on - strand, within Pf1N1B4_4621 at 5098.104 kb on + strand at 5098.104 kb on + strand at 5098.104 kb on + strand at 5098.105 kb on - strand at 5098.105 kb on - strand at 5098.105 kb on - strand at 5098.316 kb on + strand at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.448 kb on + strand, within Pf1N1B4_4622 at 5098.449 kb on - strand, within Pf1N1B4_4622 at 5098.449 kb on - strand, within Pf1N1B4_4622 at 5098.449 kb on - strand, within Pf1N1B4_4622 at 5098.449 kb on - strand, within Pf1N1B4_4622 at 5098.505 kb on + strand, within Pf1N1B4_4622 at 5098.506 kb on - strand, within Pf1N1B4_4622 at 5098.508 kb on + strand at 5098.508 kb on + strand, within Pf1N1B4_4622 at 5098.508 kb on + strand, within Pf1N1B4_4622 at 5098.508 kb on + strand at 5098.508 kb on + strand, within Pf1N1B4_4622 at 5098.509 kb on - strand, within Pf1N1B4_4622 at 5098.802 kb on + strand, within Pf1N1B4_4622 at 5098.802 kb on + strand, within Pf1N1B4_4622 at 5098.898 kb on + strand, within Pf1N1B4_4622 at 5098.899 kb on - strand, within Pf1N1B4_4622 at 5098.899 kb on - strand, within Pf1N1B4_4622
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 5,095,211 - +0.4 5,095,609 + -0.6 5,096,087 + +0.1 5,096,087 + +2.0 5,096,140 - +0.0 5,096,178 - -1.0 5,096,294 - -1.2 5,096,319 + -1.6 5,096,320 - +2.4 5,096,320 - -1.9 5,096,680 + Pf1N1B4_4621 0.28 -3.3 5,096,681 - Pf1N1B4_4621 0.28 -0.6 5,096,681 - Pf1N1B4_4621 0.28 +1.7 5,096,681 - Pf1N1B4_4621 0.28 +0.4 5,096,681 - Pf1N1B4_4621 0.28 -3.3 5,096,681 - Pf1N1B4_4621 0.28 -2.0 5,096,681 - Pf1N1B4_4621 0.28 -2.0 5,096,681 - Pf1N1B4_4621 0.28 +0.9 5,096,978 - Pf1N1B4_4621 0.45 -2.8 5,097,214 - Pf1N1B4_4621 0.58 -2.4 5,098,104 + -0.6 5,098,104 + -1.6 5,098,104 + +1.0 5,098,105 - +0.8 5,098,105 - +0.1 5,098,105 - -0.1 5,098,316 + +0.4 5,098,448 + Pf1N1B4_4622 0.24 +0.1 5,098,448 + Pf1N1B4_4622 0.24 +0.8 5,098,448 + Pf1N1B4_4622 0.24 +0.0 5,098,448 + Pf1N1B4_4622 0.24 -2.4 5,098,448 + Pf1N1B4_4622 0.24 +0.3 5,098,449 - Pf1N1B4_4622 0.24 -1.6 5,098,449 - Pf1N1B4_4622 0.24 -0.6 5,098,449 - Pf1N1B4_4622 0.24 +0.1 5,098,449 - Pf1N1B4_4622 0.24 +0.0 5,098,505 + Pf1N1B4_4622 0.28 +0.7 5,098,506 - Pf1N1B4_4622 0.28 +0.1 5,098,508 + +0.1 5,098,508 + Pf1N1B4_4622 0.28 -0.9 5,098,508 + Pf1N1B4_4622 0.28 -1.9 5,098,508 + -1.6 5,098,508 + Pf1N1B4_4622 0.28 -0.4 5,098,509 - Pf1N1B4_4622 0.28 -0.2 5,098,802 + Pf1N1B4_4622 0.51 -1.2 5,098,802 + Pf1N1B4_4622 0.51 -1.0 5,098,898 + Pf1N1B4_4622 0.58 +2.0 5,098,899 - Pf1N1B4_4622 0.58 +0.1 5,098,899 - Pf1N1B4_4622 0.58 -0.3
Or see this region's nucleotide sequence