Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4371 and Pf1N1B4_4372 are separated by 192 nucleotides Pf1N1B4_4372 and Pf1N1B4_4373 are separated by 154 nucleotides Pf1N1B4_4373 and Pf1N1B4_4374 are separated by 434 nucleotides
Pf1N1B4_4371 - Transcriptional regulator, at 4,828,731 to 4,829,624
_4371
Pf1N1B4_4372 - Galactitol utilization operon repressor, at 4,829,817 to 4,830,605
_4372
Pf1N1B4_4373 - hypothetical protein, at 4,830,760 to 4,830,903
_4373
Pf1N1B4_4374 - hypothetical protein, at 4,831,338 to 4,831,736
_4374
Position (kb)
4829
4830
4831 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4829.050 kb on - strand, within Pf1N1B4_4371 at 4829.063 kb on + strand, within Pf1N1B4_4371 at 4829.245 kb on - strand, within Pf1N1B4_4371 at 4829.245 kb on - strand, within Pf1N1B4_4371 at 4830.026 kb on + strand, within Pf1N1B4_4372 at 4830.039 kb on + strand, within Pf1N1B4_4372 at 4830.040 kb on - strand, within Pf1N1B4_4372 at 4830.040 kb on - strand, within Pf1N1B4_4372 at 4830.234 kb on + strand at 4830.595 kb on + strand at 4830.595 kb on + strand at 4830.595 kb on + strand at 4830.681 kb on + strand at 4830.682 kb on - strand at 4830.737 kb on + strand at 4830.775 kb on + strand at 4830.775 kb on + strand, within Pf1N1B4_4373 at 4830.775 kb on + strand, within Pf1N1B4_4373 at 4830.901 kb on + strand at 4830.902 kb on - strand at 4831.020 kb on + strand at 4831.020 kb on + strand at 4831.070 kb on + strand at 4831.070 kb on + strand at 4831.071 kb on - strand at 4831.119 kb on + strand at 4831.269 kb on + strand at 4831.269 kb on + strand at 4831.269 kb on + strand at 4831.270 kb on - strand at 4831.569 kb on + strand, within Pf1N1B4_4374 at 4831.570 kb on - strand, within Pf1N1B4_4374
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 4,829,050 - Pf1N1B4_4371 0.36 +0.5 4,829,063 + Pf1N1B4_4371 0.37 -0.5 4,829,245 - Pf1N1B4_4371 0.57 -0.0 4,829,245 - Pf1N1B4_4371 0.57 -0.8 4,830,026 + Pf1N1B4_4372 0.26 -2.0 4,830,039 + Pf1N1B4_4372 0.28 -1.5 4,830,040 - Pf1N1B4_4372 0.28 -0.5 4,830,040 - Pf1N1B4_4372 0.28 -1.6 4,830,234 + +0.5 4,830,595 + +0.0 4,830,595 + -1.0 4,830,595 + -0.6 4,830,681 + +1.3 4,830,682 - -0.0 4,830,737 + +1.0 4,830,775 + +0.5 4,830,775 + Pf1N1B4_4373 0.10 +0.8 4,830,775 + Pf1N1B4_4373 0.10 +1.1 4,830,901 + -0.6 4,830,902 - -1.6 4,831,020 + +0.2 4,831,020 + -0.7 4,831,070 + -0.5 4,831,070 + -0.5 4,831,071 - -2.6 4,831,119 + +1.0 4,831,269 + -1.0 4,831,269 + -1.5 4,831,269 + +2.1 4,831,270 - +1.5 4,831,569 + Pf1N1B4_4374 0.58 -0.4 4,831,570 - Pf1N1B4_4374 0.58 -1.0
Or see this region's nucleotide sequence