Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3340

Experiment: Nalidixic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.004 mg/ml
3,725,747	+		Pf1N1B4_3339	0.24	+0.7
3,725,749	+		Pf1N1B4_3339	0.24	-1.6
3,725,750	-		Pf1N1B4_3339	0.25	+0.9
3,725,750	-		Pf1N1B4_3339	0.25	+1.9
3,725,769	+		Pf1N1B4_3339	0.27	+0.6
3,725,769	+		Pf1N1B4_3339	0.27	+1.9
3,725,769	+		Pf1N1B4_3339	0.27	+0.1
3,725,770	-		Pf1N1B4_3339	0.27	+0.1
3,725,813	+		Pf1N1B4_3339	0.31	-0.5
3,725,813	+		Pf1N1B4_3339	0.31	-0.7
3,725,813	+		Pf1N1B4_3339	0.31	+0.6
3,725,814	-		Pf1N1B4_3339	0.31	+0.3
3,726,127	+		Pf1N1B4_3339	0.65	+0.9
3,726,143	+				+0.9
3,726,234	-		Pf1N1B4_3339	0.76	-1.0
3,726,253	+		Pf1N1B4_3339	0.78	-2.2
3,726,253	+		Pf1N1B4_3339	0.78	+1.3
3,726,253	+		Pf1N1B4_3339	0.78	+0.6
3,726,254	-		Pf1N1B4_3339	0.78	+1.9
3,726,254	-		Pf1N1B4_3339	0.78	+2.3
3,726,391	+				+0.5
3,726,392	-				-0.4
3,726,422	+				+0.9
3,726,435	-				+0.9
3,726,435	-				+0.1
3,726,443	+				-0.3
3,726,443	+				+0.5
3,726,444	-				+0.9
3,726,444	-				-1.9
3,726,547	-				+0.1
3,726,547	-				+1.3
3,726,675	+				-0.5
3,726,676	-				-2.2
3,726,705	+		Pf1N1B4_3340	0.11	-0.2
3,726,787	+		Pf1N1B4_3340	0.19	-1.7
3,726,787	+		Pf1N1B4_3340	0.19	+1.5
3,726,787	+		Pf1N1B4_3340	0.19	-0.7
3,726,787	+		Pf1N1B4_3340	0.19	+0.3
3,726,788	-		Pf1N1B4_3340	0.20	-2.7
3,726,788	-				+2.5
3,726,788	-		Pf1N1B4_3340	0.20	+0.2
3,726,788	-		Pf1N1B4_3340	0.20	-0.9
3,726,788	-		Pf1N1B4_3340	0.20	-1.4
3,726,788	-		Pf1N1B4_3340	0.20	-0.4
3,726,793	+		Pf1N1B4_3340	0.20	+0.9
3,726,793	+		Pf1N1B4_3340	0.20	-0.4
3,726,794	-		Pf1N1B4_3340	0.20	-0.8
3,726,794	-		Pf1N1B4_3340	0.20	-2.1
3,726,794	-		Pf1N1B4_3340	0.20	-1.7
3,726,877	+		Pf1N1B4_3340	0.29	+0.7
3,726,877	+		Pf1N1B4_3340	0.29	+0.9
3,726,878	-				+0.9
3,726,878	-		Pf1N1B4_3340	0.29	-1.4
3,726,878	-				-0.1
3,726,954	+		Pf1N1B4_3340	0.37	-0.9
3,726,955	-		Pf1N1B4_3340	0.37	-1.4
3,726,977	+		Pf1N1B4_3340	0.39	-0.4
3,726,977	+		Pf1N1B4_3340	0.39	-0.4
3,726,977	+		Pf1N1B4_3340	0.39	-1.0
3,726,977	+		Pf1N1B4_3340	0.39	-0.7
3,727,089	+		Pf1N1B4_3340	0.51	+0.1
3,727,097	-		Pf1N1B4_3340	0.52	+1.4
3,727,176	+		Pf1N1B4_3340	0.60	-1.1
3,727,177	-				+1.3
3,727,279	+		Pf1N1B4_3340	0.71	-0.3
3,727,280	-		Pf1N1B4_3340	0.71	-1.7
3,727,309	+		Pf1N1B4_3340	0.74	-0.6
3,727,310	-		Pf1N1B4_3340	0.75	-0.9
3,727,325	+		Pf1N1B4_3340	0.76	-0.1
3,727,387	-		Pf1N1B4_3340	0.83	-1.4
3,727,401	+		Pf1N1B4_3340	0.84	+0.1
3,727,969	-		Pf1N1B4_3341	0.34	+1.0
3,728,047	+		Pf1N1B4_3341	0.41	-0.3
3,728,047	+		Pf1N1B4_3341	0.41	+0.9
3,728,047	+		Pf1N1B4_3341	0.41	-0.4
3,728,047	+		Pf1N1B4_3341	0.41	-1.4
3,728,047	+		Pf1N1B4_3341	0.41	+0.2
3,728,048	-				+2.5
3,728,048	-		Pf1N1B4_3341	0.41	-0.5
3,728,048	-		Pf1N1B4_3341	0.41	+0.7
3,728,050	+		Pf1N1B4_3341	0.41	+0.2
3,728,050	+		Pf1N1B4_3341	0.41	+0.3
3,728,050	+		Pf1N1B4_3341	0.41	+0.2
3,728,051	-				-1.1
3,728,080	+		Pf1N1B4_3341	0.43	+0.1
3,728,081	-				+1.5
3,728,081	-		Pf1N1B4_3341	0.43	-3.2
3,728,081	-		Pf1N1B4_3341	0.43	-0.1
3,728,329	+		Pf1N1B4_3341	0.64	-1.9
3,728,329	+		Pf1N1B4_3341	0.64	-0.5
3,728,330	-				+0.9
3,728,330	-		Pf1N1B4_3341	0.64	-0.7