Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1440 and Pf1N1B4_1441 are separated by 52 nucleotides Pf1N1B4_1441 and Pf1N1B4_1442 are separated by 85 nucleotides
Pf1N1B4_1440 - Topoisomerase IV subunit B (EC 5.99.1.-), at 1,651,531 to 1,653,435
_1440
Pf1N1B4_1441 - Putative esterase, FIGfam005057, at 1,653,488 to 1,654,096
_1441
Pf1N1B4_1442 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 1,654,182 to 1,655,021
_1442
Position (kb)
1653
1654
1655 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1653.584 kb on - strand, within Pf1N1B4_1441 at 1653.584 kb on - strand, within Pf1N1B4_1441 at 1653.584 kb on - strand, within Pf1N1B4_1441 at 1653.584 kb on - strand, within Pf1N1B4_1441 at 1653.584 kb on - strand, within Pf1N1B4_1441 at 1653.584 kb on - strand, within Pf1N1B4_1441 at 1653.584 kb on - strand, within Pf1N1B4_1441 at 1653.584 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.628 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.678 kb on - strand, within Pf1N1B4_1441 at 1653.770 kb on - strand, within Pf1N1B4_1441 at 1653.772 kb on - strand, within Pf1N1B4_1441 at 1653.772 kb on - strand, within Pf1N1B4_1441 at 1653.772 kb on - strand, within Pf1N1B4_1441 at 1653.772 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.880 kb on - strand, within Pf1N1B4_1441 at 1653.882 kb on + strand, within Pf1N1B4_1441 at 1654.024 kb on + strand, within Pf1N1B4_1441 at 1654.024 kb on + strand, within Pf1N1B4_1441 at 1654.025 kb on - strand, within Pf1N1B4_1441 at 1654.025 kb on - strand, within Pf1N1B4_1441 at 1654.075 kb on + strand at 1654.075 kb on + strand at 1654.075 kb on + strand at 1654.076 kb on - strand at 1654.076 kb on - strand at 1654.076 kb on - strand at 1654.076 kb on - strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.077 kb on + strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.078 kb on - strand at 1654.133 kb on + strand at 1654.133 kb on + strand at 1654.133 kb on + strand at 1654.133 kb on + strand at 1654.133 kb on + strand at 1654.138 kb on + strand at 1654.138 kb on + strand at 1654.138 kb on + strand at 1654.138 kb on + strand at 1654.138 kb on + strand at 1654.138 kb on + strand at 1654.139 kb on - strand at 1654.139 kb on - strand at 1654.169 kb on + strand at 1654.201 kb on + strand at 1655.030 kb on + strand at 1655.030 kb on + strand at 1655.031 kb on - strand at 1655.031 kb on - strand at 1655.043 kb on + strand at 1655.043 kb on + strand at 1655.044 kb on - strand at 1655.044 kb on - strand at 1655.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 1,653,584 - Pf1N1B4_1441 0.16 -2.7 1,653,584 - Pf1N1B4_1441 0.16 -2.5 1,653,584 - Pf1N1B4_1441 0.16 -1.5 1,653,584 - Pf1N1B4_1441 0.16 -1.1 1,653,584 - Pf1N1B4_1441 0.16 -1.6 1,653,584 - Pf1N1B4_1441 0.16 -2.3 1,653,584 - Pf1N1B4_1441 0.16 -0.7 1,653,584 - Pf1N1B4_1441 0.16 -2.3 1,653,628 - Pf1N1B4_1441 0.23 +0.3 1,653,628 - Pf1N1B4_1441 0.23 -1.9 1,653,628 - Pf1N1B4_1441 0.23 -1.4 1,653,628 - Pf1N1B4_1441 0.23 -1.3 1,653,628 - Pf1N1B4_1441 0.23 -2.0 1,653,628 - Pf1N1B4_1441 0.23 -0.5 1,653,628 - Pf1N1B4_1441 0.23 -2.6 1,653,628 - Pf1N1B4_1441 0.23 -2.3 1,653,628 - Pf1N1B4_1441 0.23 +1.3 1,653,628 - Pf1N1B4_1441 0.23 -4.2 1,653,678 - Pf1N1B4_1441 0.31 -1.3 1,653,678 - Pf1N1B4_1441 0.31 -4.0 1,653,678 - Pf1N1B4_1441 0.31 -3.2 1,653,678 - Pf1N1B4_1441 0.31 -1.9 1,653,678 - Pf1N1B4_1441 0.31 -3.3 1,653,678 - Pf1N1B4_1441 0.31 -1.9 1,653,678 - Pf1N1B4_1441 0.31 -2.2 1,653,678 - Pf1N1B4_1441 0.31 -3.7 1,653,678 - Pf1N1B4_1441 0.31 -2.3 1,653,678 - Pf1N1B4_1441 0.31 -1.7 1,653,678 - Pf1N1B4_1441 0.31 -0.4 1,653,678 - Pf1N1B4_1441 0.31 -2.0 1,653,678 - Pf1N1B4_1441 0.31 -1.8 1,653,678 - Pf1N1B4_1441 0.31 -2.4 1,653,678 - Pf1N1B4_1441 0.31 -1.7 1,653,678 - Pf1N1B4_1441 0.31 -2.0 1,653,678 - Pf1N1B4_1441 0.31 -2.2 1,653,678 - Pf1N1B4_1441 0.31 -2.8 1,653,678 - Pf1N1B4_1441 0.31 -2.8 1,653,678 - Pf1N1B4_1441 0.31 -1.9 1,653,678 - Pf1N1B4_1441 0.31 -1.5 1,653,678 - Pf1N1B4_1441 0.31 -3.2 1,653,770 - Pf1N1B4_1441 0.46 -2.4 1,653,772 - Pf1N1B4_1441 0.47 -2.0 1,653,772 - Pf1N1B4_1441 0.47 -3.2 1,653,772 - Pf1N1B4_1441 0.47 -2.4 1,653,772 - Pf1N1B4_1441 0.47 -1.9 1,653,880 - Pf1N1B4_1441 0.64 -1.0 1,653,880 - Pf1N1B4_1441 0.64 -1.9 1,653,880 - Pf1N1B4_1441 0.64 -2.4 1,653,880 - Pf1N1B4_1441 0.64 -1.9 1,653,880 - Pf1N1B4_1441 0.64 -2.7 1,653,880 - Pf1N1B4_1441 0.64 -1.7 1,653,880 - Pf1N1B4_1441 0.64 -2.8 1,653,880 - Pf1N1B4_1441 0.64 -1.5 1,653,880 - Pf1N1B4_1441 0.64 -2.2 1,653,880 - Pf1N1B4_1441 0.64 -1.3 1,653,882 + Pf1N1B4_1441 0.65 -1.9 1,654,024 + Pf1N1B4_1441 0.88 -1.4 1,654,024 + Pf1N1B4_1441 0.88 -0.7 1,654,025 - Pf1N1B4_1441 0.88 -0.7 1,654,025 - Pf1N1B4_1441 0.88 -2.3 1,654,075 + -0.9 1,654,075 + -1.3 1,654,075 + -3.1 1,654,076 - -0.8 1,654,076 - -0.0 1,654,076 - -2.2 1,654,076 - -2.8 1,654,077 + -1.6 1,654,077 + -3.3 1,654,077 + -3.1 1,654,077 + -2.2 1,654,077 + -2.3 1,654,077 + -2.0 1,654,077 + -2.4 1,654,077 + -2.0 1,654,077 + -1.2 1,654,077 + -2.0 1,654,077 + -2.6 1,654,077 + -1.7 1,654,077 + -2.6 1,654,077 + -2.0 1,654,077 + -3.8 1,654,077 + -2.6 1,654,077 + -2.0 1,654,077 + -3.7 1,654,077 + -0.9 1,654,077 + -3.4 1,654,077 + -2.3 1,654,077 + -3.5 1,654,077 + -3.5 1,654,077 + -2.6 1,654,077 + -1.9 1,654,077 + -3.3 1,654,077 + -1.3 1,654,078 - +0.5 1,654,078 - +2.3 1,654,078 - -0.8 1,654,078 - -2.3 1,654,078 - -0.4 1,654,078 - -1.4 1,654,078 - +0.3 1,654,078 - +0.6 1,654,078 - -0.4 1,654,078 - -1.5 1,654,078 - -1.0 1,654,078 - +0.2 1,654,078 - -1.1 1,654,078 - -1.4 1,654,133 + +0.3 1,654,133 + -0.1 1,654,133 + +1.0 1,654,133 + +0.2 1,654,133 + -0.6 1,654,138 + +0.6 1,654,138 + -0.7 1,654,138 + +1.3 1,654,138 + +0.5 1,654,138 + -0.3 1,654,138 + -0.5 1,654,139 - -0.6 1,654,139 - +1.3 1,654,169 + +0.1 1,654,201 + +1.6 1,655,030 + +2.3 1,655,030 + -0.7 1,655,031 - -1.7 1,655,031 - -0.7 1,655,043 + -1.5 1,655,043 + -1.6 1,655,044 - -1.0 1,655,044 - +0.3 1,655,044 - -2.2
Or see this region's nucleotide sequence