Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1441

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1440 and Pf1N1B4_1441 are separated by 52 nucleotidesPf1N1B4_1441 and Pf1N1B4_1442 are separated by 85 nucleotides Pf1N1B4_1440 - Topoisomerase IV subunit B (EC 5.99.1.-), at 1,651,531 to 1,653,435 _1440 Pf1N1B4_1441 - Putative esterase, FIGfam005057, at 1,653,488 to 1,654,096 _1441 Pf1N1B4_1442 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 1,654,182 to 1,655,021 _1442 Position (kb) 1653 1654 1655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1653.584 kb on - strand, within Pf1N1B4_1441at 1653.584 kb on - strand, within Pf1N1B4_1441at 1653.584 kb on - strand, within Pf1N1B4_1441at 1653.584 kb on - strand, within Pf1N1B4_1441at 1653.584 kb on - strand, within Pf1N1B4_1441at 1653.584 kb on - strand, within Pf1N1B4_1441at 1653.584 kb on - strand, within Pf1N1B4_1441at 1653.584 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.628 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.678 kb on - strand, within Pf1N1B4_1441at 1653.770 kb on - strand, within Pf1N1B4_1441at 1653.772 kb on - strand, within Pf1N1B4_1441at 1653.772 kb on - strand, within Pf1N1B4_1441at 1653.772 kb on - strand, within Pf1N1B4_1441at 1653.772 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.880 kb on - strand, within Pf1N1B4_1441at 1653.882 kb on + strand, within Pf1N1B4_1441at 1654.024 kb on + strand, within Pf1N1B4_1441at 1654.024 kb on + strand, within Pf1N1B4_1441at 1654.025 kb on - strand, within Pf1N1B4_1441at 1654.025 kb on - strand, within Pf1N1B4_1441at 1654.075 kb on + strandat 1654.075 kb on + strandat 1654.075 kb on + strandat 1654.076 kb on - strandat 1654.076 kb on - strandat 1654.076 kb on - strandat 1654.076 kb on - strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.077 kb on + strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.078 kb on - strandat 1654.133 kb on + strandat 1654.133 kb on + strandat 1654.133 kb on + strandat 1654.133 kb on + strandat 1654.133 kb on + strandat 1654.138 kb on + strandat 1654.138 kb on + strandat 1654.138 kb on + strandat 1654.138 kb on + strandat 1654.138 kb on + strandat 1654.138 kb on + strandat 1654.139 kb on - strandat 1654.139 kb on - strandat 1654.169 kb on + strandat 1654.201 kb on + strandat 1655.030 kb on + strandat 1655.030 kb on + strandat 1655.031 kb on - strandat 1655.031 kb on - strandat 1655.043 kb on + strandat 1655.043 kb on + strandat 1655.044 kb on - strandat 1655.044 kb on - strandat 1655.044 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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1,653,584 - Pf1N1B4_1441 0.16 -2.7
1,653,584 - Pf1N1B4_1441 0.16 -2.5
1,653,584 - Pf1N1B4_1441 0.16 -1.5
1,653,584 - Pf1N1B4_1441 0.16 -1.1
1,653,584 - Pf1N1B4_1441 0.16 -1.6
1,653,584 - Pf1N1B4_1441 0.16 -2.3
1,653,584 - Pf1N1B4_1441 0.16 -0.7
1,653,584 - Pf1N1B4_1441 0.16 -2.3
1,653,628 - Pf1N1B4_1441 0.23 +0.3
1,653,628 - Pf1N1B4_1441 0.23 -1.9
1,653,628 - Pf1N1B4_1441 0.23 -1.4
1,653,628 - Pf1N1B4_1441 0.23 -1.3
1,653,628 - Pf1N1B4_1441 0.23 -2.0
1,653,628 - Pf1N1B4_1441 0.23 -0.5
1,653,628 - Pf1N1B4_1441 0.23 -2.6
1,653,628 - Pf1N1B4_1441 0.23 -2.3
1,653,628 - Pf1N1B4_1441 0.23 +1.3
1,653,628 - Pf1N1B4_1441 0.23 -4.2
1,653,678 - Pf1N1B4_1441 0.31 -1.3
1,653,678 - Pf1N1B4_1441 0.31 -4.0
1,653,678 - Pf1N1B4_1441 0.31 -3.2
1,653,678 - Pf1N1B4_1441 0.31 -1.9
1,653,678 - Pf1N1B4_1441 0.31 -3.3
1,653,678 - Pf1N1B4_1441 0.31 -1.9
1,653,678 - Pf1N1B4_1441 0.31 -2.2
1,653,678 - Pf1N1B4_1441 0.31 -3.7
1,653,678 - Pf1N1B4_1441 0.31 -2.3
1,653,678 - Pf1N1B4_1441 0.31 -1.7
1,653,678 - Pf1N1B4_1441 0.31 -0.4
1,653,678 - Pf1N1B4_1441 0.31 -2.0
1,653,678 - Pf1N1B4_1441 0.31 -1.8
1,653,678 - Pf1N1B4_1441 0.31 -2.4
1,653,678 - Pf1N1B4_1441 0.31 -1.7
1,653,678 - Pf1N1B4_1441 0.31 -2.0
1,653,678 - Pf1N1B4_1441 0.31 -2.2
1,653,678 - Pf1N1B4_1441 0.31 -2.8
1,653,678 - Pf1N1B4_1441 0.31 -2.8
1,653,678 - Pf1N1B4_1441 0.31 -1.9
1,653,678 - Pf1N1B4_1441 0.31 -1.5
1,653,678 - Pf1N1B4_1441 0.31 -3.2
1,653,770 - Pf1N1B4_1441 0.46 -2.4
1,653,772 - Pf1N1B4_1441 0.47 -2.0
1,653,772 - Pf1N1B4_1441 0.47 -3.2
1,653,772 - Pf1N1B4_1441 0.47 -2.4
1,653,772 - Pf1N1B4_1441 0.47 -1.9
1,653,880 - Pf1N1B4_1441 0.64 -1.0
1,653,880 - Pf1N1B4_1441 0.64 -1.9
1,653,880 - Pf1N1B4_1441 0.64 -2.4
1,653,880 - Pf1N1B4_1441 0.64 -1.9
1,653,880 - Pf1N1B4_1441 0.64 -2.7
1,653,880 - Pf1N1B4_1441 0.64 -1.7
1,653,880 - Pf1N1B4_1441 0.64 -2.8
1,653,880 - Pf1N1B4_1441 0.64 -1.5
1,653,880 - Pf1N1B4_1441 0.64 -2.2
1,653,880 - Pf1N1B4_1441 0.64 -1.3
1,653,882 + Pf1N1B4_1441 0.65 -1.9
1,654,024 + Pf1N1B4_1441 0.88 -1.4
1,654,024 + Pf1N1B4_1441 0.88 -0.7
1,654,025 - Pf1N1B4_1441 0.88 -0.7
1,654,025 - Pf1N1B4_1441 0.88 -2.3
1,654,075 + -0.9
1,654,075 + -1.3
1,654,075 + -3.1
1,654,076 - -0.8
1,654,076 - -0.0
1,654,076 - -2.2
1,654,076 - -2.8
1,654,077 + -1.6
1,654,077 + -3.3
1,654,077 + -3.1
1,654,077 + -2.2
1,654,077 + -2.3
1,654,077 + -2.0
1,654,077 + -2.4
1,654,077 + -2.0
1,654,077 + -1.2
1,654,077 + -2.0
1,654,077 + -2.6
1,654,077 + -1.7
1,654,077 + -2.6
1,654,077 + -2.0
1,654,077 + -3.8
1,654,077 + -2.6
1,654,077 + -2.0
1,654,077 + -3.7
1,654,077 + -0.9
1,654,077 + -3.4
1,654,077 + -2.3
1,654,077 + -3.5
1,654,077 + -3.5
1,654,077 + -2.6
1,654,077 + -1.9
1,654,077 + -3.3
1,654,077 + -1.3
1,654,078 - +0.5
1,654,078 - +2.3
1,654,078 - -0.8
1,654,078 - -2.3
1,654,078 - -0.4
1,654,078 - -1.4
1,654,078 - +0.3
1,654,078 - +0.6
1,654,078 - -0.4
1,654,078 - -1.5
1,654,078 - -1.0
1,654,078 - +0.2
1,654,078 - -1.1
1,654,078 - -1.4
1,654,133 + +0.3
1,654,133 + -0.1
1,654,133 + +1.0
1,654,133 + +0.2
1,654,133 + -0.6
1,654,138 + +0.6
1,654,138 + -0.7
1,654,138 + +1.3
1,654,138 + +0.5
1,654,138 + -0.3
1,654,138 + -0.5
1,654,139 - -0.6
1,654,139 - +1.3
1,654,169 + +0.1
1,654,201 + +1.6
1,655,030 + +2.3
1,655,030 + -0.7
1,655,031 - -1.7
1,655,031 - -0.7
1,655,043 + -1.5
1,655,043 + -1.6
1,655,044 - -1.0
1,655,044 - +0.3
1,655,044 - -2.2

Or see this region's nucleotide sequence