Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08890

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
1,069,546	+				+2.4
1,069,550	-				+1.9
1,069,550	-				+2.4
1,069,592	-				+2.9
1,069,666	-		MMP_RS05580	0.14	+1.4
1,069,683	+		MMP_RS05580	0.16	+3.8
1,069,704	+		MMP_RS05580	0.19	+2.8
1,069,705	-		MMP_RS05580	0.19	+2.3
1,069,713	-		MMP_RS05580	0.20	+2.0
1,069,739	-		MMP_RS05580	0.23	+2.8
1,069,742	+		MMP_RS05580	0.24	+2.1
1,069,763	+		MMP_RS05580	0.26	+2.7
1,069,780	+		MMP_RS05580	0.28	+2.6
1,069,780	+		MMP_RS05580	0.28	+2.1
1,069,780	+		MMP_RS05580	0.28	+2.7
1,069,780	+		MMP_RS05580	0.28	+1.9
1,069,781	-		MMP_RS05580	0.28	+3.1
1,069,781	-		MMP_RS05580	0.28	+0.7
1,069,782	+		MMP_RS05580	0.29	+2.5
1,069,782	+		MMP_RS05580	0.29	+2.8
1,069,782	+		MMP_RS05580	0.29	+2.8
1,069,782	+		MMP_RS05580	0.29	+2.7
1,069,784	-		MMP_RS05580	0.29	+2.0
1,069,784	-		MMP_RS05580	0.29	+4.0
1,069,784	-		MMP_RS05580	0.29	+2.3
1,069,784	-		MMP_RS05580	0.29	+2.4
1,069,785	+		MMP_RS05580	0.29	+2.9
1,069,785	+		MMP_RS05580	0.29	+2.8
1,069,785	+		MMP_RS05580	0.29	+0.7
1,069,785	+		MMP_RS05580	0.29	+2.6
1,069,785	+		MMP_RS05580	0.29	+2.3
1,069,792	-		MMP_RS05580	0.30	+2.3
1,069,793	+		MMP_RS05580	0.30	+2.4
1,069,849	-		MMP_RS05580	0.37	+2.5
1,069,865	+		MMP_RS05580	0.39	+2.5
1,069,868	-		MMP_RS05580	0.39	+2.8
1,069,868	-		MMP_RS05580	0.39	+2.8
1,069,870	-		MMP_RS05580	0.39	+2.9
1,069,882	+		MMP_RS05580	0.41	+2.8
1,069,929	-		MMP_RS05580	0.47	+2.6
1,069,982	-		MMP_RS05580	0.53	+3.2
1,069,983	+		MMP_RS05580	0.53	+2.6
1,069,989	+		MMP_RS05580	0.54	+4.4
1,069,992	+		MMP_RS05580	0.54	+2.6
1,070,079	-		MMP_RS05580	0.65	+2.5
1,070,079	-		MMP_RS05580	0.65	+2.2
1,070,080	+		MMP_RS05580	0.65	+2.3
1,070,080	+		MMP_RS05580	0.65	+2.0
1,070,112	+		MMP_RS05580	0.69	+1.8
1,070,132	-		MMP_RS05580	0.72	+2.3
1,070,133	+		MMP_RS05580	0.72	+2.4
1,070,133	+		MMP_RS05580	0.72	+1.5
1,070,216	+		MMP_RS05580	0.82	+2.5
1,070,219	-		MMP_RS05580	0.82	+2.1
1,070,223	+		MMP_RS05580	0.83	+2.4
1,070,332	-				+2.7
1,070,333	+				+2.8
1,070,333	+				+2.4
1,070,335	-				+2.4
1,070,346	-				+1.7
1,070,347	+				+3.1
1,070,348	-				-2.6
1,070,348	-				-1.7
1,070,348	-				-3.3
1,070,359	+				-1.9
1,070,370	-				-2.0
1,070,373	-				-2.2
1,070,429	-				+4.0
1,070,438	+				+3.8
1,070,466	-				-0.4
1,070,470	+				+0.4
1,070,478	-				-1.0
1,070,479	+				-0.1
1,070,479	+				-0.8
1,070,548	+				+4.0
1,070,548	+				-4.4
1,070,561	+				-2.7
1,070,614	-				-4.0
1,070,629	-				-2.9
1,070,629	-				+4.0
1,070,632	-				-2.7
1,070,632	-				-1.5
1,070,633	+				-1.2
1,070,634	-				-1.8
1,070,634	-				-2.8
1,070,688	-		MMP_RS08890	0.14	-2.2
1,070,688	-		MMP_RS08890	0.14	-2.8
1,070,688	-		MMP_RS08890	0.14	-1.0
1,070,694	-		MMP_RS08890	0.15	-1.2
1,070,694	-		MMP_RS08890	0.15	-1.4
1,070,694	-		MMP_RS08890	0.15	-2.0
1,070,694	-		MMP_RS08890	0.15	-2.1
1,070,694	-		MMP_RS08890	0.15	-3.0
1,070,694	-		MMP_RS08890	0.15	-4.5
1,070,694	-		MMP_RS08890	0.15	-1.7
1,070,695	+		MMP_RS08890	0.15	-2.3
1,070,695	+		MMP_RS08890	0.15	-2.8
1,070,695	+		MMP_RS08890	0.15	-2.1
1,070,695	+		MMP_RS08890	0.15	-3.0
1,070,695	+		MMP_RS08890	0.15	-3.8
1,070,695	+		MMP_RS08890	0.15	-2.1
1,070,695	+		MMP_RS08890	0.15	-1.0
1,070,698	-		MMP_RS08890	0.15	-3.7
1,070,699	+		MMP_RS08890	0.15	-1.5
1,070,699	+		MMP_RS08890	0.15	-1.2
1,070,699	+		MMP_RS08890	0.15	-3.2
1,070,699	+		MMP_RS08890	0.15	-2.8
1,070,734	-		MMP_RS08890	0.18	-2.7
1,070,740	-		MMP_RS08890	0.19	-4.2
1,070,741	+		MMP_RS08890	0.19	-4.6
1,070,741	+		MMP_RS08890	0.19	-1.6
1,070,741	+		MMP_RS08890	0.19	-3.7
1,070,899	+		MMP_RS08890	0.33	-1.9
1,070,941	+		MMP_RS08890	0.37	-2.3
1,070,991	-		MMP_RS08890	0.42	-3.5
1,070,992	+		MMP_RS08890	0.42	-1.9
1,070,995	-		MMP_RS08890	0.42	-1.9
1,071,056	+		MMP_RS08890	0.48	-2.1
1,071,183	-		MMP_RS08890	0.59	-3.0
1,071,187	-		MMP_RS08890	0.60	-2.2
1,071,187	-		MMP_RS08890	0.60	-2.9
1,071,187	-		MMP_RS08890	0.60	-3.7
1,071,188	+		MMP_RS08890	0.60	-2.0
1,071,188	+		MMP_RS08890	0.60	+4.1
1,071,189	-		MMP_RS08890	0.60	-1.9
1,071,189	-		MMP_RS08890	0.60	-3.9
1,071,207	-		MMP_RS08890	0.61	-2.5
1,071,208	+		MMP_RS08890	0.62	-1.0
1,071,231	+		MMP_RS08890	0.64	+3.7
1,071,231	+		MMP_RS08890	0.64	-1.7
1,071,239	+		MMP_RS08890	0.64	-2.0
1,071,244	+		MMP_RS08890	0.65	-2.4
1,071,244	+		MMP_RS08890	0.65	-3.9
1,071,244	+		MMP_RS08890	0.65	-1.9
1,071,301	-		MMP_RS08890	0.70	-3.8
1,071,592	-				-1.6
1,071,599	-				-2.3
1,071,617	+				-0.3
1,071,617	+				+0.5
1,071,622	-				+0.5
1,071,626	-				-1.0
1,071,702	-				+0.2
1,071,755	+				-0.1
1,071,755	+				+0.2
1,071,768	-				-1.8
1,071,769	+				+0.1
1,071,769	+				+0.3
1,071,823	-				-0.8
1,071,824	+				+0.1
1,071,837	-				-0.1
1,071,838	+				-0.0
1,071,848	-				+1.1
1,071,848	-				-0.3
1,071,848	-				+0.5
1,071,849	+				-0.3
1,071,849	+				-0.2
1,071,851	-				+0.0
1,071,851	-				-0.9
1,071,851	-				-0.3
1,071,851	-				+0.1
1,071,853	-				+0.2
1,071,853	-				-0.3
1,071,853	-				+0.2
1,071,853	-				-1.0
1,071,854	+				-1.0
1,071,866	+				+0.2
1,071,926	-				+0.4
1,072,001	+				+0.6
1,072,002	-				+0.8
1,072,007	-				-0.3
1,072,041	+				-0.4
1,072,045	-				+0.4
1,072,063	-				-0.2
1,072,063	-				-0.1
1,072,070	+				+0.3
1,072,104	-				+0.6
1,072,104	-				+0.4
1,072,104	-				+5.2
1,072,105	+				-0.8
1,072,114	-				-0.5
1,072,114	-				-1.7
1,072,115	+				-0.6
1,072,115	+				+0.7
1,072,115	+				-0.4
1,072,115	+				-1.0
1,072,178	-				-0.8
1,072,184	+				-0.3
1,072,284	-				+0.6
1,072,285	+				+0.5
1,072,285	+				-0.9
1,072,285	+				+0.3
1,072,288	-				+3.5
1,072,288	-				-1.1
1,072,288	-				-0.5
1,072,289	+				+4.5
1,072,289	+				+0.7
1,072,300	-				-0.5
1,072,301	+				+0.3
1,072,304	-				-0.4
1,072,304	-				-0.8
1,072,305	+				-0.3
1,072,305	+				-0.3
1,072,305	+				-1.0
1,072,305	+				-0.4
1,072,305	+				+4.4
1,072,310	+				+0.6
1,072,310	+				-0.4
1,072,331	+				+0.3
1,072,334	-				-0.4
1,072,337	-				-0.3
1,072,359	-				+0.4
1,072,371	-				+0.3
1,072,429	-				-0.5
1,072,429	-				-2.0
1,072,430	+				-0.4
1,072,464	+		MMP_RS05590	0.11	+0.7
1,072,464	+		MMP_RS05590	0.11	+0.2
1,072,537	-		MMP_RS05590	0.18	+0.1
1,072,576	+		MMP_RS05590	0.21	+0.5
1,072,579	-		MMP_RS05590	0.21	-0.2
1,072,579	-		MMP_RS05590	0.21	+4.2
1,072,580	+		MMP_RS05590	0.21	+0.1
1,072,580	+		MMP_RS05590	0.21	-1.4
1,072,580	+		MMP_RS05590	0.21	-0.5
1,072,580	+		MMP_RS05590	0.21	+0.2
1,072,580	+		MMP_RS05590	0.21	+0.7
1,072,580	+		MMP_RS05590	0.21	-0.1
1,072,580	+		MMP_RS05590	0.21	-0.9
1,072,580	+		MMP_RS05590	0.21	-1.0
1,072,583	-		MMP_RS05590	0.22	-1.3
1,072,583	-		MMP_RS05590	0.22	-1.0
1,072,588	-		MMP_RS05590	0.22	-0.0
1,072,588	-		MMP_RS05590	0.22	-1.3
1,072,589	+		MMP_RS05590	0.22	+0.2
1,072,589	+		MMP_RS05590	0.22	-1.3
1,072,592	-		MMP_RS05590	0.22	+0.8
1,072,592	-		MMP_RS05590	0.22	-0.7
1,072,592	-		MMP_RS05590	0.22	+4.6
1,072,592	-		MMP_RS05590	0.22	-0.6
1,072,593	+		MMP_RS05590	0.23	+0.4
1,072,593	+		MMP_RS05590	0.23	+4.2
1,072,593	+		MMP_RS05590	0.23	-0.3
1,072,612	+		MMP_RS05590	0.24	-1.0