Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03525

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03515 and MMP_RS03520 are separated by 9 nucleotidesMMP_RS03520 and MMP_RS03525 are separated by 102 nucleotidesMMP_RS03525 and MMP_RS03530 are separated by 15 nucleotides MMP_RS03515: MMP_RS03515 - DMT family transporter, at 659,209 to 660,099 _RS03515 MMP_RS03520: MMP_RS03520 - YwbE family protein, at 660,109 to 660,303 _RS03520 MMP_RS03525: MMP_RS03525 - ketopantoate reductase family protein, at 660,406 to 661,326 _RS03525 MMP_RS03530: MMP_RS03530 - tetratricopeptide repeat protein, at 661,342 to 662,571 _RS03530 Position (kb) 660 661 662Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 659.433 kb on - strand, within MMP_RS03515at 659.440 kb on - strand, within MMP_RS03515at 659.443 kb on - strand, within MMP_RS03515at 659.444 kb on + strand, within MMP_RS03515at 659.447 kb on - strand, within MMP_RS03515at 659.465 kb on - strand, within MMP_RS03515at 659.466 kb on + strand, within MMP_RS03515at 659.470 kb on - strand, within MMP_RS03515at 659.495 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.661 kb on + strand, within MMP_RS03515at 659.695 kb on - strand, within MMP_RS03515at 659.743 kb on + strand, within MMP_RS03515at 659.751 kb on - strand, within MMP_RS03515at 659.751 kb on - strand, within MMP_RS03515at 659.778 kb on - strand, within MMP_RS03515at 659.781 kb on + strand, within MMP_RS03515at 659.897 kb on + strand, within MMP_RS03515at 659.956 kb on - strand, within MMP_RS03515at 659.959 kb on + strand, within MMP_RS03515at 659.959 kb on + strand, within MMP_RS03515at 660.015 kb on - strandat 660.027 kb on + strandat 660.058 kb on - strandat 660.098 kb on + strandat 660.153 kb on + strand, within MMP_RS03520at 660.159 kb on + strand, within MMP_RS03520at 660.301 kb on - strandat 660.301 kb on - strandat 660.332 kb on + strandat 660.350 kb on - strandat 660.366 kb on - strandat 660.562 kb on - strand, within MMP_RS03525at 660.562 kb on - strand, within MMP_RS03525at 660.563 kb on + strand, within MMP_RS03525at 660.564 kb on - strand, within MMP_RS03525at 660.612 kb on - strand, within MMP_RS03525at 660.616 kb on + strand, within MMP_RS03525at 660.618 kb on + strand, within MMP_RS03525at 660.735 kb on - strand, within MMP_RS03525at 660.735 kb on - strand, within MMP_RS03525at 660.762 kb on - strand, within MMP_RS03525at 660.762 kb on - strand, within MMP_RS03525at 660.797 kb on - strand, within MMP_RS03525at 660.863 kb on - strand, within MMP_RS03525at 660.875 kb on - strand, within MMP_RS03525at 660.922 kb on + strand, within MMP_RS03525at 660.952 kb on - strand, within MMP_RS03525at 660.953 kb on + strand, within MMP_RS03525at 660.966 kb on + strand, within MMP_RS03525at 660.985 kb on + strand, within MMP_RS03525at 661.042 kb on + strand, within MMP_RS03525at 661.046 kb on - strand, within MMP_RS03525at 661.049 kb on + strand, within MMP_RS03525at 661.056 kb on + strand, within MMP_RS03525at 661.089 kb on + strand, within MMP_RS03525at 661.194 kb on - strand, within MMP_RS03525at 661.367 kb on + strandat 661.382 kb on - strandat 661.382 kb on - strandat 661.407 kb on - strandat 661.549 kb on + strand, within MMP_RS03530at 661.549 kb on + strand, within MMP_RS03530at 661.556 kb on + strand, within MMP_RS03530at 661.654 kb on + strand, within MMP_RS03530at 661.724 kb on + strand, within MMP_RS03530at 661.740 kb on + strand, within MMP_RS03530at 661.770 kb on - strand, within MMP_RS03530at 661.792 kb on + strand, within MMP_RS03530at 661.842 kb on + strand, within MMP_RS03530at 661.876 kb on + strand, within MMP_RS03530at 661.877 kb on - strand, within MMP_RS03530at 661.877 kb on - strand, within MMP_RS03530at 661.877 kb on - strand, within MMP_RS03530at 661.879 kb on - strand, within MMP_RS03530at 661.879 kb on - strand, within MMP_RS03530at 661.880 kb on + strand, within MMP_RS03530at 661.880 kb on + strand, within MMP_RS03530at 661.890 kb on + strand, within MMP_RS03530at 661.892 kb on - strand, within MMP_RS03530at 661.941 kb on - strand, within MMP_RS03530at 661.942 kb on + strand, within MMP_RS03530at 661.942 kb on + strand, within MMP_RS03530at 661.944 kb on + strand, within MMP_RS03530at 662.012 kb on + strand, within MMP_RS03530at 662.064 kb on + strand, within MMP_RS03530at 662.170 kb on - strand, within MMP_RS03530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
remove
659,433 - MMP_RS03515 0.25 -0.2
659,440 - MMP_RS03515 0.26 +4.2
659,443 - MMP_RS03515 0.26 +0.4
659,444 + MMP_RS03515 0.26 +0.0
659,447 - MMP_RS03515 0.27 +0.2
659,465 - MMP_RS03515 0.29 +0.6
659,466 + MMP_RS03515 0.29 +0.1
659,470 - MMP_RS03515 0.29 +0.1
659,495 - MMP_RS03515 0.32 +4.0
659,660 - MMP_RS03515 0.51 -0.3
659,660 - MMP_RS03515 0.51 -0.3
659,660 - MMP_RS03515 0.51 -0.3
659,660 - MMP_RS03515 0.51 +0.1
659,660 - MMP_RS03515 0.51 +0.4
659,661 + MMP_RS03515 0.51 +0.3
659,695 - MMP_RS03515 0.55 +0.1
659,743 + MMP_RS03515 0.60 +0.1
659,751 - MMP_RS03515 0.61 -0.5
659,751 - MMP_RS03515 0.61 +0.6
659,778 - MMP_RS03515 0.64 +0.1
659,781 + MMP_RS03515 0.64 -0.5
659,897 + MMP_RS03515 0.77 +0.1
659,956 - MMP_RS03515 0.84 +3.7
659,959 + MMP_RS03515 0.84 -0.3
659,959 + MMP_RS03515 0.84 -0.3
660,015 - +0.3
660,027 + +0.1
660,058 - -0.2
660,098 + +0.6
660,153 + MMP_RS03520 0.23 -0.1
660,159 + MMP_RS03520 0.26 +0.9
660,301 - +0.4
660,301 - +4.4
660,332 + +0.6
660,350 - +3.7
660,366 - -0.2
660,562 - MMP_RS03525 0.17 +0.5
660,562 - MMP_RS03525 0.17 -0.5
660,563 + MMP_RS03525 0.17 -0.5
660,564 - MMP_RS03525 0.17 +0.4
660,612 - MMP_RS03525 0.22 +4.4
660,616 + MMP_RS03525 0.23 +1.1
660,618 + MMP_RS03525 0.23 +0.2
660,735 - MMP_RS03525 0.36 -0.2
660,735 - MMP_RS03525 0.36 -2.4
660,762 - MMP_RS03525 0.39 +4.1
660,762 - MMP_RS03525 0.39 +0.7
660,797 - MMP_RS03525 0.42 +0.6
660,863 - MMP_RS03525 0.50 +4.6
660,875 - MMP_RS03525 0.51 +0.1
660,922 + MMP_RS03525 0.56 +0.3
660,952 - MMP_RS03525 0.59 +0.3
660,953 + MMP_RS03525 0.59 +0.7
660,966 + MMP_RS03525 0.61 +0.6
660,985 + MMP_RS03525 0.63 -0.4
661,042 + MMP_RS03525 0.69 +0.2
661,046 - MMP_RS03525 0.69 -0.6
661,049 + MMP_RS03525 0.70 +0.2
661,056 + MMP_RS03525 0.71 +1.1
661,089 + MMP_RS03525 0.74 -0.2
661,194 - MMP_RS03525 0.86 +4.2
661,367 + +0.1
661,382 - +0.6
661,382 - +0.7
661,407 - -0.3
661,549 + MMP_RS03530 0.17 +0.4
661,549 + MMP_RS03530 0.17 -0.4
661,556 + MMP_RS03530 0.17 +0.3
661,654 + MMP_RS03530 0.25 +4.4
661,724 + MMP_RS03530 0.31 +3.6
661,740 + MMP_RS03530 0.32 +4.7
661,770 - MMP_RS03530 0.35 +0.4
661,792 + MMP_RS03530 0.37 +0.9
661,842 + MMP_RS03530 0.41 +0.6
661,876 + MMP_RS03530 0.43 +0.2
661,877 - MMP_RS03530 0.43 -0.2
661,877 - MMP_RS03530 0.43 +0.1
661,877 - MMP_RS03530 0.43 -0.5
661,879 - MMP_RS03530 0.44 +4.4
661,879 - MMP_RS03530 0.44 +0.4
661,880 + MMP_RS03530 0.44 +0.7
661,880 + MMP_RS03530 0.44 -0.7
661,890 + MMP_RS03530 0.45 +1.0
661,892 - MMP_RS03530 0.45 -0.4
661,941 - MMP_RS03530 0.49 +1.0
661,942 + MMP_RS03530 0.49 +1.2
661,942 + MMP_RS03530 0.49 -0.6
661,944 + MMP_RS03530 0.49 -0.3
662,012 + MMP_RS03530 0.54 +0.4
662,064 + MMP_RS03530 0.59 -0.3
662,170 - MMP_RS03530 0.67 +0.0

Or see this region's nucleotide sequence