Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01980

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01975 and MMP_RS01980 are separated by 133 nucleotidesMMP_RS01980 and MMP_RS01985 are separated by 79 nucleotides MMP_RS01975: MMP_RS01975 - hypothetical protein, at 366,983 to 368,389 _RS01975 MMP_RS01980: MMP_RS01980 - trimeric intracellular cation channel family protein, at 368,523 to 369,152 _RS01980 MMP_RS01985: MMP_RS01985 - F420-dependent methylenetetrahydromethanopterin dehydrogenase, at 369,232 to 370,065 _RS01985 Position (kb) 368 369 370Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 367.536 kb on - strand, within MMP_RS01975at 367.550 kb on + strand, within MMP_RS01975at 367.586 kb on + strand, within MMP_RS01975at 367.603 kb on - strand, within MMP_RS01975at 367.615 kb on - strand, within MMP_RS01975at 367.621 kb on + strand, within MMP_RS01975at 367.681 kb on + strand, within MMP_RS01975at 367.701 kb on + strand, within MMP_RS01975at 367.716 kb on + strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.720 kb on + strand, within MMP_RS01975at 367.757 kb on - strand, within MMP_RS01975at 367.758 kb on + strand, within MMP_RS01975at 367.775 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.872 kb on - strand, within MMP_RS01975at 367.909 kb on - strand, within MMP_RS01975at 367.951 kb on - strand, within MMP_RS01975at 367.954 kb on + strand, within MMP_RS01975at 367.993 kb on + strand, within MMP_RS01975at 368.023 kb on + strand, within MMP_RS01975at 368.045 kb on + strand, within MMP_RS01975at 368.056 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.100 kb on + strand, within MMP_RS01975at 368.100 kb on + strand, within MMP_RS01975at 368.104 kb on + strand, within MMP_RS01975at 368.106 kb on - strand, within MMP_RS01975at 368.106 kb on - strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.128 kb on - strand, within MMP_RS01975at 368.131 kb on - strand, within MMP_RS01975at 368.131 kb on - strand, within MMP_RS01975at 368.225 kb on - strand, within MMP_RS01975at 368.225 kb on - strand, within MMP_RS01975at 368.273 kb on - strandat 368.320 kb on + strandat 368.327 kb on + strandat 368.331 kb on - strandat 368.331 kb on - strandat 368.354 kb on + strandat 368.365 kb on + strandat 368.374 kb on + strandat 368.380 kb on - strandat 368.399 kb on - strandat 368.448 kb on - strandat 368.470 kb on + strandat 368.471 kb on - strandat 368.473 kb on - strandat 368.474 kb on + strandat 368.493 kb on - strandat 368.494 kb on + strandat 368.494 kb on + strandat 368.497 kb on - strandat 368.497 kb on - strandat 368.528 kb on - strandat 368.604 kb on + strand, within MMP_RS01980at 368.615 kb on + strand, within MMP_RS01980at 368.646 kb on + strand, within MMP_RS01980at 368.691 kb on + strand, within MMP_RS01980at 368.707 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.789 kb on + strand, within MMP_RS01980at 368.789 kb on + strand, within MMP_RS01980at 368.799 kb on - strand, within MMP_RS01980at 368.799 kb on - strand, within MMP_RS01980at 368.807 kb on + strand, within MMP_RS01980at 368.865 kb on - strand, within MMP_RS01980at 368.866 kb on + strand, within MMP_RS01980at 368.867 kb on - strand, within MMP_RS01980at 368.868 kb on + strand, within MMP_RS01980at 368.894 kb on + strand, within MMP_RS01980at 368.898 kb on + strand, within MMP_RS01980at 368.935 kb on - strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.944 kb on - strand, within MMP_RS01980at 368.950 kb on - strand, within MMP_RS01980at 368.986 kb on + strand, within MMP_RS01980at 369.022 kb on + strand, within MMP_RS01980at 369.157 kb on - strandat 369.212 kb on - strandat 369.256 kb on + strandat 369.361 kb on - strand, within MMP_RS01985at 369.647 kb on + strand, within MMP_RS01985at 369.647 kb on + strand, within MMP_RS01985at 369.683 kb on + strand, within MMP_RS01985at 369.890 kb on + strand, within MMP_RS01985at 369.890 kb on + strand, within MMP_RS01985at 370.067 kb on + strandat 370.067 kb on + strandat 370.067 kb on + strandat 370.100 kb on - strandat 370.120 kb on - strandat 370.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
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367,536 - MMP_RS01975 0.39 -4.5
367,550 + MMP_RS01975 0.40 +0.3
367,586 + MMP_RS01975 0.43 -3.4
367,603 - MMP_RS01975 0.44 +0.4
367,615 - MMP_RS01975 0.45 -4.7
367,621 + MMP_RS01975 0.45 -2.5
367,681 + MMP_RS01975 0.50 -3.8
367,701 + MMP_RS01975 0.51 -3.0
367,716 + MMP_RS01975 0.52 -5.4
367,719 - MMP_RS01975 0.52 -2.9
367,719 - MMP_RS01975 0.52 -3.6
367,720 + MMP_RS01975 0.52 -2.6
367,757 - MMP_RS01975 0.55 -4.5
367,758 + MMP_RS01975 0.55 -3.6
367,775 - MMP_RS01975 0.56 -0.5
367,779 - MMP_RS01975 0.57 -3.1
367,779 - MMP_RS01975 0.57 -3.9
367,779 - MMP_RS01975 0.57 -3.1
367,872 - MMP_RS01975 0.63 -4.1
367,909 - MMP_RS01975 0.66 -1.9
367,951 - MMP_RS01975 0.69 -4.4
367,954 + MMP_RS01975 0.69 -1.9
367,993 + MMP_RS01975 0.72 -2.4
368,023 + MMP_RS01975 0.74 -2.3
368,045 + MMP_RS01975 0.75 -1.6
368,056 - MMP_RS01975 0.76 -3.6
368,099 - MMP_RS01975 0.79 -4.8
368,099 - MMP_RS01975 0.79 -3.5
368,099 - MMP_RS01975 0.79 -3.1
368,100 + MMP_RS01975 0.79 +0.9
368,100 + MMP_RS01975 0.79 -3.7
368,104 + MMP_RS01975 0.80 -3.4
368,106 - MMP_RS01975 0.80 -1.9
368,106 - MMP_RS01975 0.80 -3.2
368,107 + MMP_RS01975 0.80 -2.4
368,107 + MMP_RS01975 0.80 -4.1
368,107 + MMP_RS01975 0.80 -0.8
368,128 - MMP_RS01975 0.81 -2.6
368,131 - MMP_RS01975 0.82 -4.2
368,131 - MMP_RS01975 0.82 -2.0
368,225 - MMP_RS01975 0.88 -1.8
368,225 - MMP_RS01975 0.88 -4.3
368,273 - -4.2
368,320 + +0.8
368,327 + -3.5
368,331 - -2.9
368,331 - -2.9
368,354 + -3.7
368,365 + -0.1
368,374 + +0.6
368,380 - +0.3
368,399 - +3.9
368,448 - -0.6
368,470 + -0.1
368,471 - -4.1
368,473 - -2.2
368,474 + -0.2
368,493 - -3.0
368,494 + -0.2
368,494 + -0.3
368,497 - -1.6
368,497 - -4.3
368,528 - -3.4
368,604 + MMP_RS01980 0.13 -2.1
368,615 + MMP_RS01980 0.15 -5.7
368,646 + MMP_RS01980 0.20 -5.1
368,691 + MMP_RS01980 0.27 -3.8
368,707 - MMP_RS01980 0.29 -3.6
368,788 - MMP_RS01980 0.42 -3.6
368,788 - MMP_RS01980 0.42 -4.2
368,788 - MMP_RS01980 0.42 -3.0
368,789 + MMP_RS01980 0.42 -4.0
368,789 + MMP_RS01980 0.42 -5.4
368,799 - MMP_RS01980 0.44 -0.9
368,799 - MMP_RS01980 0.44 -4.3
368,807 + MMP_RS01980 0.45 -4.1
368,865 - MMP_RS01980 0.54 -4.5
368,866 + MMP_RS01980 0.54 -4.6
368,867 - MMP_RS01980 0.55 -2.6
368,868 + MMP_RS01980 0.55 -4.0
368,894 + MMP_RS01980 0.59 -2.3
368,898 + MMP_RS01980 0.60 -3.6
368,935 - MMP_RS01980 0.65 -3.3
368,936 + MMP_RS01980 0.66 -4.1
368,936 + MMP_RS01980 0.66 -3.9
368,936 + MMP_RS01980 0.66 -5.1
368,944 - MMP_RS01980 0.67 -2.3
368,950 - MMP_RS01980 0.68 -3.8
368,986 + MMP_RS01980 0.73 -2.9
369,022 + MMP_RS01980 0.79 -3.9
369,157 - -0.1
369,212 - -0.4
369,256 + -0.2
369,361 - MMP_RS01985 0.15 -0.4
369,647 + MMP_RS01985 0.50 -0.3
369,647 + MMP_RS01985 0.50 +0.0
369,683 + MMP_RS01985 0.54 -0.7
369,890 + MMP_RS01985 0.79 -0.3
369,890 + MMP_RS01985 0.79 -1.5
370,067 + -0.1
370,067 + -0.0
370,067 + -0.6
370,100 - -1.8
370,120 - +3.4
370,121 + -2.1

Or see this region's nucleotide sequence