Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01935

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01925 and MMP_RS01930 are separated by 1 nucleotidesMMP_RS01930 and MMP_RS01935 overlap by 4 nucleotidesMMP_RS01935 and MMP_RS01940 are separated by 3 nucleotidesMMP_RS01940 and MMP_RS01945 overlap by 26 nucleotides MMP_RS01925: MMP_RS01925 - DUF1616 domain-containing protein, at 356,729 to 357,700 _RS01925 MMP_RS01930: MMP_RS01930 - hypothetical protein, at 357,702 to 358,256 _RS01930 MMP_RS01935: MMP_RS01935 - DUF58 domain-containing protein, at 358,253 to 359,554 _RS01935 MMP_RS01940: MMP_RS01940 - MoxR family ATPase, at 359,558 to 360,499 _RS01940 MMP_RS01945: MMP_RS01945 - DUF4350 domain-containing protein, at 360,474 to 361,472 _RS01945 Position (kb) 358 359 360Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 357.287 kb on - strand, within MMP_RS01925at 357.287 kb on - strand, within MMP_RS01925at 357.288 kb on + strand, within MMP_RS01925at 357.343 kb on + strand, within MMP_RS01925at 357.404 kb on - strand, within MMP_RS01925at 357.405 kb on + strand, within MMP_RS01925at 357.409 kb on - strand, within MMP_RS01925at 357.417 kb on - strand, within MMP_RS01925at 357.417 kb on - strand, within MMP_RS01925at 357.431 kb on + strand, within MMP_RS01925at 357.431 kb on + strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.445 kb on - strand, within MMP_RS01925at 357.446 kb on + strand, within MMP_RS01925at 357.466 kb on - strand, within MMP_RS01925at 357.490 kb on - strand, within MMP_RS01925at 357.536 kb on + strand, within MMP_RS01925at 357.573 kb on - strand, within MMP_RS01925at 357.574 kb on + strand, within MMP_RS01925at 357.707 kb on - strandat 357.856 kb on + strand, within MMP_RS01930at 357.858 kb on - strand, within MMP_RS01930at 357.859 kb on + strand, within MMP_RS01930at 357.875 kb on - strand, within MMP_RS01930at 357.879 kb on - strand, within MMP_RS01930at 357.924 kb on - strand, within MMP_RS01930at 357.925 kb on + strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.927 kb on + strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.929 kb on + strand, within MMP_RS01930at 357.930 kb on - strand, within MMP_RS01930at 357.930 kb on - strand, within MMP_RS01930at 357.931 kb on + strand, within MMP_RS01930at 357.957 kb on - strand, within MMP_RS01930at 357.958 kb on + strand, within MMP_RS01930at 357.966 kb on - strand, within MMP_RS01930at 357.972 kb on - strand, within MMP_RS01930at 357.972 kb on - strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.975 kb on - strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.977 kb on - strand, within MMP_RS01930at 357.977 kb on - strand, within MMP_RS01930at 357.978 kb on + strand, within MMP_RS01930at 357.978 kb on + strand, within MMP_RS01930at 357.981 kb on - strand, within MMP_RS01930at 357.982 kb on + strand, within MMP_RS01930at 358.011 kb on - strand, within MMP_RS01930at 358.012 kb on + strand, within MMP_RS01930at 358.023 kb on - strand, within MMP_RS01930at 358.028 kb on - strand, within MMP_RS01930at 358.028 kb on - strand, within MMP_RS01930at 358.053 kb on + strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.062 kb on - strand, within MMP_RS01930at 358.115 kb on + strand, within MMP_RS01930at 358.115 kb on + strand, within MMP_RS01930at 358.164 kb on + strand, within MMP_RS01930at 358.165 kb on - strand, within MMP_RS01930at 358.165 kb on - strand, within MMP_RS01930at 358.166 kb on + strand, within MMP_RS01930at 358.204 kb on - strandat 358.240 kb on + strandat 358.247 kb on - strandat 358.247 kb on - strandat 358.271 kb on - strandat 358.271 kb on - strandat 358.272 kb on + strandat 358.272 kb on + strandat 358.283 kb on - strandat 358.299 kb on + strandat 358.366 kb on + strandat 358.431 kb on + strand, within MMP_RS01935at 358.504 kb on - strand, within MMP_RS01935at 358.523 kb on + strand, within MMP_RS01935at 358.523 kb on + strand, within MMP_RS01935at 358.536 kb on - strand, within MMP_RS01935at 358.537 kb on + strand, within MMP_RS01935at 358.618 kb on - strand, within MMP_RS01935at 358.621 kb on - strand, within MMP_RS01935at 358.665 kb on + strand, within MMP_RS01935at 358.670 kb on + strand, within MMP_RS01935at 358.678 kb on - strand, within MMP_RS01935at 358.679 kb on + strand, within MMP_RS01935at 358.725 kb on + strand, within MMP_RS01935at 358.725 kb on + strand, within MMP_RS01935at 358.782 kb on - strand, within MMP_RS01935at 358.783 kb on + strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.786 kb on + strand, within MMP_RS01935at 358.786 kb on + strand, within MMP_RS01935at 358.787 kb on - strand, within MMP_RS01935at 358.788 kb on + strand, within MMP_RS01935at 358.811 kb on - strand, within MMP_RS01935at 358.816 kb on + strand, within MMP_RS01935at 358.816 kb on + strand, within MMP_RS01935at 358.862 kb on + strand, within MMP_RS01935at 358.864 kb on - strand, within MMP_RS01935at 358.865 kb on + strand, within MMP_RS01935at 358.957 kb on - strand, within MMP_RS01935at 358.992 kb on + strand, within MMP_RS01935at 358.992 kb on + strand, within MMP_RS01935at 359.090 kb on + strand, within MMP_RS01935at 359.117 kb on + strand, within MMP_RS01935at 359.174 kb on - strand, within MMP_RS01935at 359.174 kb on - strand, within MMP_RS01935at 359.195 kb on - strand, within MMP_RS01935at 359.445 kb on + strandat 359.445 kb on + strandat 359.446 kb on - strandat 359.446 kb on - strandat 359.446 kb on - strandat 359.447 kb on + strandat 359.483 kb on - strandat 359.483 kb on - strandat 359.486 kb on + strandat 359.529 kb on - strandat 359.529 kb on - strandat 359.529 kb on - strandat 359.591 kb on + strandat 359.662 kb on - strand, within MMP_RS01940at 359.712 kb on - strand, within MMP_RS01940at 359.789 kb on - strand, within MMP_RS01940at 360.037 kb on + strand, within MMP_RS01940at 360.099 kb on + strand, within MMP_RS01940at 360.176 kb on + strand, within MMP_RS01940at 360.180 kb on + strand, within MMP_RS01940at 360.458 kb on - strandat 360.480 kb on + strandat 360.513 kb on - strandat 360.514 kb on + strandat 360.518 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
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357,287 - MMP_RS01925 0.57 -0.6
357,287 - MMP_RS01925 0.57 -3.2
357,288 + MMP_RS01925 0.58 +0.8
357,343 + MMP_RS01925 0.63 -2.0
357,404 - MMP_RS01925 0.69 -2.0
357,405 + MMP_RS01925 0.70 -1.3
357,409 - MMP_RS01925 0.70 -0.7
357,417 - MMP_RS01925 0.71 -0.6
357,417 - MMP_RS01925 0.71 -1.4
357,431 + MMP_RS01925 0.72 -1.1
357,431 + MMP_RS01925 0.72 -0.2
357,443 - MMP_RS01925 0.73 -4.1
357,443 - MMP_RS01925 0.73 -0.7
357,443 - MMP_RS01925 0.73 +0.8
357,445 - MMP_RS01925 0.74 -1.2
357,446 + MMP_RS01925 0.74 -1.5
357,466 - MMP_RS01925 0.76 -0.8
357,490 - MMP_RS01925 0.78 -1.9
357,536 + MMP_RS01925 0.83 -0.9
357,573 - MMP_RS01925 0.87 +0.3
357,574 + MMP_RS01925 0.87 -1.6
357,707 - -0.6
357,856 + MMP_RS01930 0.28 -2.6
357,858 - MMP_RS01930 0.28 -3.3
357,859 + MMP_RS01930 0.28 -0.4
357,875 - MMP_RS01930 0.31 -2.5
357,879 - MMP_RS01930 0.32 -3.5
357,924 - MMP_RS01930 0.40 -1.6
357,925 + MMP_RS01930 0.40 -3.1
357,926 - MMP_RS01930 0.40 -1.1
357,926 - MMP_RS01930 0.40 -2.5
357,926 - MMP_RS01930 0.40 -2.8
357,927 + MMP_RS01930 0.41 -2.8
357,928 - MMP_RS01930 0.41 -2.4
357,928 - MMP_RS01930 0.41 -1.9
357,928 - MMP_RS01930 0.41 -3.0
357,928 - MMP_RS01930 0.41 -2.8
357,928 - MMP_RS01930 0.41 -2.5
357,928 - MMP_RS01930 0.41 -1.7
357,929 + MMP_RS01930 0.41 -2.6
357,930 - MMP_RS01930 0.41 -3.2
357,930 - MMP_RS01930 0.41 -2.6
357,931 + MMP_RS01930 0.41 -2.2
357,957 - MMP_RS01930 0.46 -3.3
357,958 + MMP_RS01930 0.46 -2.8
357,966 - MMP_RS01930 0.48 -3.1
357,972 - MMP_RS01930 0.49 -3.3
357,972 - MMP_RS01930 0.49 -3.4
357,973 + MMP_RS01930 0.49 -3.5
357,973 + MMP_RS01930 0.49 -2.6
357,973 + MMP_RS01930 0.49 -2.4
357,973 + MMP_RS01930 0.49 -1.7
357,973 + MMP_RS01930 0.49 -3.4
357,973 + MMP_RS01930 0.49 -2.7
357,975 - MMP_RS01930 0.49 -2.9
357,976 + MMP_RS01930 0.49 -3.4
357,976 + MMP_RS01930 0.49 -3.7
357,976 + MMP_RS01930 0.49 -2.6
357,977 - MMP_RS01930 0.50 -2.8
357,977 - MMP_RS01930 0.50 -3.6
357,978 + MMP_RS01930 0.50 -4.0
357,978 + MMP_RS01930 0.50 -3.9
357,981 - MMP_RS01930 0.50 -3.0
357,982 + MMP_RS01930 0.50 -2.3
358,011 - MMP_RS01930 0.56 -4.2
358,012 + MMP_RS01930 0.56 -1.2
358,023 - MMP_RS01930 0.58 +2.4
358,028 - MMP_RS01930 0.59 -3.3
358,028 - MMP_RS01930 0.59 -1.6
358,053 + MMP_RS01930 0.63 -3.4
358,058 - MMP_RS01930 0.64 -1.9
358,058 - MMP_RS01930 0.64 -2.0
358,058 - MMP_RS01930 0.64 -2.5
358,062 - MMP_RS01930 0.65 -1.3
358,115 + MMP_RS01930 0.74 -2.4
358,115 + MMP_RS01930 0.74 -2.4
358,164 + MMP_RS01930 0.83 -2.7
358,165 - MMP_RS01930 0.83 -2.8
358,165 - MMP_RS01930 0.83 -2.7
358,166 + MMP_RS01930 0.84 -3.0
358,204 - -3.2
358,240 + -4.3
358,247 - -2.4
358,247 - -2.1
358,271 - -3.1
358,271 - -3.5
358,272 + -2.5
358,272 + -2.8
358,283 - -3.3
358,299 + -1.9
358,366 + +2.0
358,431 + MMP_RS01935 0.14 -3.7
358,504 - MMP_RS01935 0.19 -1.1
358,523 + MMP_RS01935 0.21 -2.9
358,523 + MMP_RS01935 0.21 -3.1
358,536 - MMP_RS01935 0.22 -4.8
358,537 + MMP_RS01935 0.22 -2.7
358,618 - MMP_RS01935 0.28 -3.9
358,621 - MMP_RS01935 0.28 -4.3
358,665 + MMP_RS01935 0.32 -3.0
358,670 + MMP_RS01935 0.32 -2.5
358,678 - MMP_RS01935 0.33 -2.3
358,679 + MMP_RS01935 0.33 -2.4
358,725 + MMP_RS01935 0.36 -3.5
358,725 + MMP_RS01935 0.36 -2.9
358,782 - MMP_RS01935 0.41 -2.0
358,783 + MMP_RS01935 0.41 +1.6
358,785 - MMP_RS01935 0.41 -4.5
358,785 - MMP_RS01935 0.41 -1.6
358,785 - MMP_RS01935 0.41 -2.9
358,786 + MMP_RS01935 0.41 -3.0
358,786 + MMP_RS01935 0.41 -1.2
358,787 - MMP_RS01935 0.41 -3.1
358,788 + MMP_RS01935 0.41 -3.2
358,811 - MMP_RS01935 0.43 -2.9
358,816 + MMP_RS01935 0.43 -2.3
358,816 + MMP_RS01935 0.43 -4.2
358,862 + MMP_RS01935 0.47 -2.7
358,864 - MMP_RS01935 0.47 -3.3
358,865 + MMP_RS01935 0.47 -3.8
358,957 - MMP_RS01935 0.54 -2.1
358,992 + MMP_RS01935 0.57 +0.8
358,992 + MMP_RS01935 0.57 -0.5
359,090 + MMP_RS01935 0.64 +0.4
359,117 + MMP_RS01935 0.66 -3.7
359,174 - MMP_RS01935 0.71 -3.6
359,174 - MMP_RS01935 0.71 -2.2
359,195 - MMP_RS01935 0.72 -3.5
359,445 + -2.6
359,445 + -4.0
359,446 - -2.9
359,446 - -2.5
359,446 - -2.1
359,447 + -3.5
359,483 - -2.8
359,483 - -3.8
359,486 + -3.9
359,529 - -3.1
359,529 - -2.6
359,529 - -1.8
359,591 + -0.3
359,662 - MMP_RS01940 0.11 +0.8
359,712 - MMP_RS01940 0.16 -2.8
359,789 - MMP_RS01940 0.25 -1.3
360,037 + MMP_RS01940 0.51 -3.0
360,099 + MMP_RS01940 0.57 -3.8
360,176 + MMP_RS01940 0.66 -3.4
360,180 + MMP_RS01940 0.66 -3.8
360,458 - -1.2
360,480 + -3.5
360,513 - -4.6
360,514 + -3.0
360,518 - -2.0

Or see this region's nucleotide sequence