Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22900 and HSERO_RS22905 are separated by 45 nucleotides HSERO_RS22905 and HSERO_RS22910 are separated by 65 nucleotides
HSERO_RS22900: HSERO_RS22900 - meta-pathway of phenol degradation protein, at 5,254,188 to 5,255,138
_RS22900
HSERO_RS22905: HSERO_RS22905 - 3-alpha-hydroxysteroid dehydrogenase, at 5,255,184 to 5,255,951
_RS22905
HSERO_RS22910: HSERO_RS22910 - benzaldehyde dehydrogenase, at 5,256,017 to 5,257,480
_RS22910
Position (kb) 5255
5256 Strain fitness (log2 ratio) -1
0
1
2 at 5254.217 kb on - strand at 5254.387 kb on - strand, within HSERO_RS22900 at 5254.556 kb on + strand, within HSERO_RS22900 at 5254.627 kb on - strand, within HSERO_RS22900 at 5254.702 kb on - strand, within HSERO_RS22900 at 5254.713 kb on - strand, within HSERO_RS22900 at 5254.807 kb on - strand, within HSERO_RS22900 at 5254.911 kb on + strand, within HSERO_RS22900 at 5254.914 kb on - strand, within HSERO_RS22900 at 5254.958 kb on + strand, within HSERO_RS22900 at 5255.074 kb on + strand at 5255.102 kb on + strand at 5255.244 kb on + strand at 5255.251 kb on + strand at 5255.302 kb on + strand, within HSERO_RS22905 at 5255.340 kb on + strand, within HSERO_RS22905 at 5255.436 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.669 kb on + strand, within HSERO_RS22905 at 5255.677 kb on - strand, within HSERO_RS22905 at 5255.682 kb on - strand, within HSERO_RS22905 at 5255.736 kb on - strand, within HSERO_RS22905 at 5255.788 kb on + strand, within HSERO_RS22905 at 5255.815 kb on - strand, within HSERO_RS22905 at 5255.945 kb on + strand at 5256.023 kb on - strand at 5256.272 kb on + strand, within HSERO_RS22910 at 5256.285 kb on - strand, within HSERO_RS22910 at 5256.659 kb on + strand, within HSERO_RS22910 at 5256.678 kb on - strand, within HSERO_RS22910 at 5256.826 kb on + strand, within HSERO_RS22910 at 5256.937 kb on + strand, within HSERO_RS22910 at 5256.942 kb on + strand, within HSERO_RS22910 at 5256.950 kb on - strand, within HSERO_RS22910
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 5,254,217 - +0.7 5,254,387 - HSERO_RS22900 0.21 +0.3 5,254,556 + HSERO_RS22900 0.39 +0.3 5,254,627 - HSERO_RS22900 0.46 -0.4 5,254,702 - HSERO_RS22900 0.54 -0.4 5,254,713 - HSERO_RS22900 0.55 -0.2 5,254,807 - HSERO_RS22900 0.65 -0.8 5,254,911 + HSERO_RS22900 0.76 -0.5 5,254,914 - HSERO_RS22900 0.76 -0.2 5,254,958 + HSERO_RS22900 0.81 -1.4 5,255,074 + -0.5 5,255,102 + -0.0 5,255,244 + +0.4 5,255,251 + +0.4 5,255,302 + HSERO_RS22905 0.15 +0.5 5,255,340 + HSERO_RS22905 0.20 -1.1 5,255,436 + HSERO_RS22905 0.33 +1.6 5,255,557 + HSERO_RS22905 0.49 -0.3 5,255,557 + HSERO_RS22905 0.49 +0.5 5,255,557 + HSERO_RS22905 0.49 -0.5 5,255,669 + HSERO_RS22905 0.63 +1.5 5,255,677 - HSERO_RS22905 0.64 +0.2 5,255,682 - HSERO_RS22905 0.65 +2.1 5,255,736 - HSERO_RS22905 0.72 +1.1 5,255,788 + HSERO_RS22905 0.79 +0.1 5,255,815 - HSERO_RS22905 0.82 -0.3 5,255,945 + +1.4 5,256,023 - +1.5 5,256,272 + HSERO_RS22910 0.17 +0.9 5,256,285 - HSERO_RS22910 0.18 +0.8 5,256,659 + HSERO_RS22910 0.44 -1.2 5,256,678 - HSERO_RS22910 0.45 +0.4 5,256,826 + HSERO_RS22910 0.55 +1.7 5,256,937 + HSERO_RS22910 0.63 +0.5 5,256,942 + HSERO_RS22910 0.63 -1.6 5,256,950 - HSERO_RS22910 0.64 +1.1
Or see this region's nucleotide sequence