Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21885 and HSERO_RS21890 overlap by 4 nucleotides HSERO_RS21890 and HSERO_RS21895 are separated by 8 nucleotides HSERO_RS21895 and HSERO_RS21900 are separated by 299 nucleotides
HSERO_RS21885: HSERO_RS21885 - nuclease PIN, at 5,009,960 to 5,010,643
_RS21885
HSERO_RS21890: HSERO_RS21890 - hypothetical protein, at 5,010,640 to 5,011,392
_RS21890
HSERO_RS21895: HSERO_RS21895 - TonB-dependent receptor, at 5,011,401 to 5,013,746
_RS21895
HSERO_RS21900: HSERO_RS21900 - transcriptional regulator, at 5,014,046 to 5,014,768
_RS21900
Position (kb) 5011
5012
5013
5014 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5010.622 kb on - strand at 5010.623 kb on - strand at 5010.655 kb on + strand at 5011.182 kb on + strand, within HSERO_RS21890 at 5011.217 kb on + strand, within HSERO_RS21890 at 5011.222 kb on + strand, within HSERO_RS21890 at 5011.251 kb on + strand, within HSERO_RS21890 at 5011.316 kb on - strand, within HSERO_RS21890 at 5011.424 kb on + strand at 5011.432 kb on - strand at 5011.432 kb on - strand at 5011.432 kb on - strand at 5011.432 kb on - strand at 5011.453 kb on + strand at 5011.460 kb on + strand at 5011.468 kb on - strand at 5011.626 kb on + strand at 5011.634 kb on - strand at 5011.670 kb on - strand, within HSERO_RS21895 at 5011.736 kb on + strand, within HSERO_RS21895 at 5011.744 kb on - strand, within HSERO_RS21895 at 5011.796 kb on - strand, within HSERO_RS21895 at 5012.055 kb on + strand, within HSERO_RS21895 at 5012.091 kb on + strand, within HSERO_RS21895 at 5012.133 kb on - strand, within HSERO_RS21895 at 5012.200 kb on + strand, within HSERO_RS21895 at 5012.334 kb on - strand, within HSERO_RS21895 at 5012.371 kb on - strand, within HSERO_RS21895 at 5012.569 kb on + strand, within HSERO_RS21895 at 5012.722 kb on + strand, within HSERO_RS21895 at 5012.731 kb on + strand, within HSERO_RS21895 at 5012.868 kb on + strand, within HSERO_RS21895 at 5013.142 kb on + strand at 5013.171 kb on - strand, within HSERO_RS21895 at 5013.284 kb on + strand, within HSERO_RS21895 at 5013.365 kb on - strand, within HSERO_RS21895 at 5013.397 kb on + strand, within HSERO_RS21895 at 5013.493 kb on + strand, within HSERO_RS21895 at 5013.563 kb on - strand at 5013.573 kb on + strand at 5013.786 kb on + strand at 5013.912 kb on + strand at 5013.930 kb on - strand at 5013.930 kb on - strand at 5013.949 kb on + strand at 5013.949 kb on + strand at 5013.961 kb on + strand at 5013.970 kb on - strand at 5013.970 kb on - strand at 5014.233 kb on + strand, within HSERO_RS21900 at 5014.241 kb on - strand, within HSERO_RS21900 at 5014.301 kb on + strand, within HSERO_RS21900 at 5014.323 kb on + strand, within HSERO_RS21900 at 5014.331 kb on - strand, within HSERO_RS21900 at 5014.397 kb on + strand, within HSERO_RS21900 at 5014.652 kb on - strand, within HSERO_RS21900 at 5014.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 5,010,622 - +0.1 5,010,623 - -1.4 5,010,655 + +0.7 5,011,182 + HSERO_RS21890 0.72 -0.3 5,011,217 + HSERO_RS21890 0.77 +1.5 5,011,222 + HSERO_RS21890 0.77 -0.1 5,011,251 + HSERO_RS21890 0.81 +0.3 5,011,316 - HSERO_RS21890 0.90 +0.2 5,011,424 + +0.1 5,011,432 - -0.6 5,011,432 - -0.3 5,011,432 - -0.0 5,011,432 - +1.4 5,011,453 + -0.5 5,011,460 + -1.0 5,011,468 - -0.9 5,011,626 + -0.5 5,011,634 - +0.3 5,011,670 - HSERO_RS21895 0.11 +1.2 5,011,736 + HSERO_RS21895 0.14 +0.2 5,011,744 - HSERO_RS21895 0.15 -0.1 5,011,796 - HSERO_RS21895 0.17 +2.4 5,012,055 + HSERO_RS21895 0.28 +0.8 5,012,091 + HSERO_RS21895 0.29 -1.1 5,012,133 - HSERO_RS21895 0.31 -1.1 5,012,200 + HSERO_RS21895 0.34 +0.1 5,012,334 - HSERO_RS21895 0.40 -0.2 5,012,371 - HSERO_RS21895 0.41 -0.3 5,012,569 + HSERO_RS21895 0.50 +1.3 5,012,722 + HSERO_RS21895 0.56 -2.1 5,012,731 + HSERO_RS21895 0.57 -0.8 5,012,868 + HSERO_RS21895 0.63 +1.0 5,013,142 + -0.8 5,013,171 - HSERO_RS21895 0.75 -0.0 5,013,284 + HSERO_RS21895 0.80 +0.5 5,013,365 - HSERO_RS21895 0.84 -2.5 5,013,397 + HSERO_RS21895 0.85 +0.7 5,013,493 + HSERO_RS21895 0.89 +0.4 5,013,563 - -1.3 5,013,573 + -0.3 5,013,786 + +2.9 5,013,912 + +1.8 5,013,930 - -0.3 5,013,930 - +0.5 5,013,949 + -0.3 5,013,949 + -1.2 5,013,961 + +0.0 5,013,970 - -0.6 5,013,970 - +0.3 5,014,233 + HSERO_RS21900 0.26 -0.0 5,014,241 - HSERO_RS21900 0.27 -1.9 5,014,301 + HSERO_RS21900 0.35 -2.0 5,014,323 + HSERO_RS21900 0.38 -1.0 5,014,331 - HSERO_RS21900 0.39 +0.7 5,014,397 + HSERO_RS21900 0.49 -0.2 5,014,652 - HSERO_RS21900 0.84 -1.1 5,014,739 - -0.7
Or see this region's nucleotide sequence