Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20870 and HSERO_RS20875 are separated by 161 nucleotides HSERO_RS20875 and HSERO_RS20880 are separated by 95 nucleotides HSERO_RS20880 and HSERO_RS20885 are separated by 38 nucleotides
HSERO_RS20870: HSERO_RS20870 - hypothetical protein, at 4,774,757 to 4,775,872
_RS20870
HSERO_RS20875: HSERO_RS20875 - hypothetical protein, at 4,776,034 to 4,776,795
_RS20875
HSERO_RS20880: HSERO_RS20880 - 7-cyano-7-deazaguanine synthase, at 4,776,891 to 4,777,640
_RS20880
HSERO_RS20885: HSERO_RS20885 - beta-lactamase, at 4,777,679 to 4,778,890
_RS20885
Position (kb) 4776
4777 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4775.071 kb on + strand, within HSERO_RS20870 at 4775.161 kb on + strand, within HSERO_RS20870 at 4775.161 kb on + strand, within HSERO_RS20870 at 4775.210 kb on + strand, within HSERO_RS20870 at 4775.228 kb on + strand, within HSERO_RS20870 at 4775.251 kb on - strand, within HSERO_RS20870 at 4775.294 kb on - strand, within HSERO_RS20870 at 4775.301 kb on + strand, within HSERO_RS20870 at 4775.301 kb on + strand, within HSERO_RS20870 at 4775.433 kb on - strand, within HSERO_RS20870 at 4775.539 kb on + strand, within HSERO_RS20870 at 4775.631 kb on - strand, within HSERO_RS20870 at 4775.658 kb on - strand, within HSERO_RS20870 at 4775.806 kb on + strand at 4775.814 kb on - strand at 4775.816 kb on - strand at 4775.851 kb on - strand at 4775.853 kb on + strand at 4776.077 kb on - strand at 4776.219 kb on - strand, within HSERO_RS20875 at 4776.302 kb on - strand, within HSERO_RS20875 at 4776.332 kb on + strand, within HSERO_RS20875 at 4776.413 kb on - strand, within HSERO_RS20875 at 4776.416 kb on + strand, within HSERO_RS20875 at 4776.424 kb on - strand, within HSERO_RS20875 at 4776.457 kb on + strand, within HSERO_RS20875 at 4776.525 kb on + strand, within HSERO_RS20875 at 4776.589 kb on - strand, within HSERO_RS20875 at 4776.595 kb on - strand, within HSERO_RS20875 at 4776.717 kb on - strand, within HSERO_RS20875 at 4776.841 kb on - strand at 4776.901 kb on - strand at 4776.903 kb on + strand at 4776.930 kb on - strand at 4776.930 kb on - strand at 4776.998 kb on - strand, within HSERO_RS20880 at 4777.219 kb on - strand, within HSERO_RS20880 at 4777.219 kb on - strand, within HSERO_RS20880 at 4777.231 kb on - strand, within HSERO_RS20880 at 4777.231 kb on - strand, within HSERO_RS20880 at 4777.231 kb on - strand, within HSERO_RS20880 at 4777.231 kb on - strand, within HSERO_RS20880 at 4777.270 kb on + strand, within HSERO_RS20880 at 4777.383 kb on + strand, within HSERO_RS20880 at 4777.553 kb on - strand, within HSERO_RS20880 at 4777.560 kb on - strand, within HSERO_RS20880 at 4777.648 kb on + strand at 4777.662 kb on + strand at 4777.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,775,071 + HSERO_RS20870 0.28 +0.7 4,775,161 + HSERO_RS20870 0.36 +0.3 4,775,161 + HSERO_RS20870 0.36 +0.4 4,775,210 + HSERO_RS20870 0.41 +0.3 4,775,228 + HSERO_RS20870 0.42 +1.9 4,775,251 - HSERO_RS20870 0.44 +0.5 4,775,294 - HSERO_RS20870 0.48 +0.2 4,775,301 + HSERO_RS20870 0.49 -0.4 4,775,301 + HSERO_RS20870 0.49 +0.6 4,775,433 - HSERO_RS20870 0.61 +2.5 4,775,539 + HSERO_RS20870 0.70 +1.1 4,775,631 - HSERO_RS20870 0.78 -0.9 4,775,658 - HSERO_RS20870 0.81 -1.6 4,775,806 + +0.3 4,775,814 - -0.1 4,775,816 - -0.1 4,775,851 - -1.1 4,775,853 + -1.7 4,776,077 - +2.0 4,776,219 - HSERO_RS20875 0.24 -0.5 4,776,302 - HSERO_RS20875 0.35 -0.5 4,776,332 + HSERO_RS20875 0.39 +0.3 4,776,413 - HSERO_RS20875 0.50 -0.7 4,776,416 + HSERO_RS20875 0.50 +0.1 4,776,424 - HSERO_RS20875 0.51 +0.5 4,776,457 + HSERO_RS20875 0.56 +0.6 4,776,525 + HSERO_RS20875 0.64 -0.0 4,776,589 - HSERO_RS20875 0.73 -1.1 4,776,595 - HSERO_RS20875 0.74 +0.0 4,776,717 - HSERO_RS20875 0.90 +0.7 4,776,841 - -0.6 4,776,901 - -2.2 4,776,903 + -1.0 4,776,930 - +1.2 4,776,930 - -1.0 4,776,998 - HSERO_RS20880 0.14 +0.6 4,777,219 - HSERO_RS20880 0.44 +0.5 4,777,219 - HSERO_RS20880 0.44 -0.4 4,777,231 - HSERO_RS20880 0.45 +0.3 4,777,231 - HSERO_RS20880 0.45 +0.1 4,777,231 - HSERO_RS20880 0.45 -1.0 4,777,231 - HSERO_RS20880 0.45 -0.5 4,777,270 + HSERO_RS20880 0.51 -0.6 4,777,383 + HSERO_RS20880 0.66 +0.3 4,777,553 - HSERO_RS20880 0.88 -0.3 4,777,560 - HSERO_RS20880 0.89 +0.3 4,777,648 + +0.9 4,777,662 + +0.1 4,777,703 - +0.5
Or see this region's nucleotide sequence