Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19405 and HSERO_RS19410 are separated by 218 nucleotides HSERO_RS19410 and HSERO_RS19415 are separated by 82 nucleotides HSERO_RS19415 and HSERO_RS19420 are separated by 186 nucleotides HSERO_RS19420 and HSERO_RS19425 are separated by 209 nucleotides
HSERO_RS19405: HSERO_RS19405 - enoyl-CoA hydratase, at 4,448,791 to 4,449,567
_RS19405
HSERO_RS19410: HSERO_RS19410 - universal stress protein, at 4,449,786 to 4,450,223
_RS19410
HSERO_RS19415: HSERO_RS19415 - membrane protein, at 4,450,306 to 4,451,538
_RS19415
HSERO_RS19420: HSERO_RS19420 - cobalt transporter, at 4,451,725 to 4,452,099
_RS19420
HSERO_RS19425: HSERO_RS19425 - ribulose-phosphate 3-epimerase, at 4,452,309 to 4,452,974
_RS19425
Position (kb) 4450
4451
4452 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4449.334 kb on - strand, within HSERO_RS19405 at 4449.334 kb on - strand, within HSERO_RS19405 at 4449.426 kb on + strand, within HSERO_RS19405 at 4449.562 kb on + strand at 4449.570 kb on - strand at 4449.575 kb on + strand at 4449.738 kb on - strand at 4449.788 kb on + strand at 4449.825 kb on + strand at 4449.849 kb on + strand, within HSERO_RS19410 at 4449.889 kb on + strand, within HSERO_RS19410 at 4449.905 kb on + strand, within HSERO_RS19410 at 4449.906 kb on + strand, within HSERO_RS19410 at 4449.926 kb on + strand at 4450.103 kb on + strand, within HSERO_RS19410 at 4450.171 kb on - strand, within HSERO_RS19410 at 4450.220 kb on - strand at 4450.222 kb on + strand at 4450.240 kb on - strand at 4450.313 kb on + strand at 4450.421 kb on + strand at 4450.650 kb on + strand at 4450.673 kb on - strand, within HSERO_RS19415 at 4450.729 kb on - strand, within HSERO_RS19415 at 4450.745 kb on - strand, within HSERO_RS19415 at 4450.781 kb on + strand at 4450.796 kb on + strand, within HSERO_RS19415 at 4450.796 kb on + strand, within HSERO_RS19415 at 4450.841 kb on - strand, within HSERO_RS19415 at 4450.922 kb on + strand, within HSERO_RS19415 at 4451.061 kb on - strand, within HSERO_RS19415 at 4451.061 kb on - strand, within HSERO_RS19415 at 4451.165 kb on + strand, within HSERO_RS19415 at 4451.308 kb on - strand, within HSERO_RS19415 at 4451.324 kb on + strand, within HSERO_RS19415 at 4451.532 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,449,334 - HSERO_RS19405 0.70 +0.6 4,449,334 - HSERO_RS19405 0.70 +0.2 4,449,426 + HSERO_RS19405 0.82 -1.1 4,449,562 + +0.9 4,449,570 - -0.6 4,449,575 + +0.3 4,449,738 - -0.7 4,449,788 + +1.2 4,449,825 + +2.0 4,449,849 + HSERO_RS19410 0.14 -0.8 4,449,889 + HSERO_RS19410 0.24 +0.2 4,449,905 + HSERO_RS19410 0.27 -1.8 4,449,906 + HSERO_RS19410 0.27 -0.9 4,449,926 + +0.5 4,450,103 + HSERO_RS19410 0.72 -0.2 4,450,171 - HSERO_RS19410 0.88 -0.1 4,450,220 - -0.0 4,450,222 + -0.4 4,450,240 - -0.4 4,450,313 + -0.3 4,450,421 + -0.9 4,450,650 + +0.5 4,450,673 - HSERO_RS19415 0.30 -0.5 4,450,729 - HSERO_RS19415 0.34 -0.1 4,450,745 - HSERO_RS19415 0.36 -0.3 4,450,781 + +0.5 4,450,796 + HSERO_RS19415 0.40 -1.1 4,450,796 + HSERO_RS19415 0.40 +0.0 4,450,841 - HSERO_RS19415 0.43 -0.2 4,450,922 + HSERO_RS19415 0.50 -1.2 4,451,061 - HSERO_RS19415 0.61 +0.9 4,451,061 - HSERO_RS19415 0.61 -0.5 4,451,165 + HSERO_RS19415 0.70 -1.1 4,451,308 - HSERO_RS19415 0.81 -0.3 4,451,324 + HSERO_RS19415 0.83 -0.1 4,451,532 + -1.4
Or see this region's nucleotide sequence