Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04400 and HSERO_RS04405 overlap by 63 nucleotides HSERO_RS04405 and HSERO_RS04410 overlap by 10 nucleotides HSERO_RS04410 and HSERO_RS04415 overlap by 8 nucleotides HSERO_RS04415 and HSERO_RS04420 are separated by 313 nucleotides HSERO_RS04420 and HSERO_RS04425 are separated by 121 nucleotides HSERO_RS04425 and HSERO_RS04430 are separated by 0 nucleotides
HSERO_RS04400: HSERO_RS04400 - transcriptional regulator, at 974,612 to 974,806
_RS04400
HSERO_RS04405: HSERO_RS04405 - transcriptional regulator, at 974,744 to 974,872
_RS04405
HSERO_RS04410: HSERO_RS04410 - hypothetical protein, at 974,863 to 975,060
_RS04410
HSERO_RS04415: HSERO_RS04415 - hypothetical protein, at 975,053 to 975,295
_RS04415
HSERO_RS04420: HSERO_RS04420 - DNA-binding transcriptional regulator, at 975,609 to 976,046
_RS04420
HSERO_RS04425: HSERO_RS04425 - phage-encoded membrane protein, at 976,168 to 976,833
_RS04425
HSERO_RS04430: HSERO_RS04430 - phage late control protein, at 976,834 to 978,063
_RS04430
Position (kb) 975
976
977 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 974.627 kb on + strand at 974.635 kb on - strand, within HSERO_RS04400 at 974.708 kb on + strand, within HSERO_RS04400 at 974.708 kb on + strand, within HSERO_RS04400 at 974.708 kb on + strand, within HSERO_RS04400 at 974.716 kb on - strand, within HSERO_RS04400 at 974.736 kb on - strand, within HSERO_RS04400 at 974.747 kb on + strand at 974.755 kb on - strand at 974.813 kb on + strand, within HSERO_RS04405 at 974.821 kb on - strand, within HSERO_RS04405 at 974.861 kb on + strand at 974.908 kb on - strand, within HSERO_RS04410 at 974.940 kb on - strand, within HSERO_RS04410 at 975.014 kb on + strand, within HSERO_RS04410 at 975.014 kb on + strand at 975.022 kb on - strand, within HSERO_RS04410 at 975.022 kb on - strand, within HSERO_RS04410 at 975.035 kb on + strand, within HSERO_RS04410 at 975.035 kb on + strand, within HSERO_RS04410 at 975.045 kb on + strand at 975.125 kb on - strand, within HSERO_RS04415 at 975.146 kb on - strand, within HSERO_RS04415 at 975.153 kb on + strand at 975.153 kb on + strand, within HSERO_RS04415 at 975.153 kb on + strand, within HSERO_RS04415 at 975.161 kb on - strand, within HSERO_RS04415 at 975.161 kb on - strand, within HSERO_RS04415 at 975.161 kb on - strand, within HSERO_RS04415 at 975.161 kb on - strand, within HSERO_RS04415 at 975.163 kb on + strand, within HSERO_RS04415 at 975.163 kb on + strand, within HSERO_RS04415 at 975.171 kb on - strand, within HSERO_RS04415 at 975.171 kb on - strand, within HSERO_RS04415 at 975.171 kb on - strand at 975.171 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.183 kb on + strand, within HSERO_RS04415 at 975.301 kb on + strand at 975.310 kb on - strand at 975.310 kb on - strand at 975.335 kb on - strand at 975.352 kb on - strand at 975.396 kb on + strand at 975.396 kb on + strand at 975.404 kb on - strand at 975.404 kb on - strand at 976.066 kb on + strand at 976.082 kb on + strand at 976.089 kb on + strand at 976.089 kb on + strand at 976.089 kb on - strand at 976.091 kb on + strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.097 kb on - strand at 976.099 kb on - strand at 976.099 kb on - strand at 976.127 kb on + strand at 976.127 kb on + strand at 976.136 kb on - strand at 976.141 kb on + strand at 976.141 kb on - strand at 976.141 kb on - strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.149 kb on + strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.168 kb on - strand at 976.168 kb on - strand at 976.186 kb on + strand at 976.196 kb on + strand at 976.199 kb on - strand at 976.199 kb on - strand at 976.201 kb on - strand at 976.206 kb on + strand at 976.220 kb on + strand at 976.228 kb on - strand at 976.229 kb on - strand at 976.239 kb on + strand, within HSERO_RS04425 at 976.239 kb on + strand, within HSERO_RS04425 at 976.264 kb on - strand, within HSERO_RS04425 at 976.273 kb on + strand, within HSERO_RS04425 at 976.281 kb on - strand, within HSERO_RS04425 at 976.285 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.308 kb on - strand, within HSERO_RS04425 at 976.329 kb on + strand, within HSERO_RS04425 at 976.336 kb on - strand, within HSERO_RS04425 at 976.337 kb on - strand, within HSERO_RS04425 at 976.355 kb on + strand, within HSERO_RS04425 at 976.355 kb on + strand, within HSERO_RS04425 at 976.363 kb on - strand, within HSERO_RS04425 at 976.410 kb on - strand, within HSERO_RS04425 at 976.422 kb on + strand, within HSERO_RS04425 at 976.434 kb on + strand, within HSERO_RS04425 at 976.436 kb on + strand, within HSERO_RS04425 at 976.443 kb on + strand, within HSERO_RS04425 at 976.451 kb on - strand, within HSERO_RS04425 at 976.469 kb on - strand, within HSERO_RS04425 at 976.471 kb on + strand, within HSERO_RS04425 at 976.479 kb on - strand, within HSERO_RS04425 at 976.490 kb on - strand, within HSERO_RS04425 at 976.498 kb on + strand, within HSERO_RS04425 at 976.506 kb on - strand, within HSERO_RS04425 at 976.537 kb on - strand, within HSERO_RS04425 at 976.575 kb on + strand, within HSERO_RS04425 at 976.638 kb on + strand, within HSERO_RS04425 at 976.640 kb on - strand, within HSERO_RS04425 at 976.646 kb on - strand, within HSERO_RS04425 at 976.685 kb on + strand, within HSERO_RS04425 at 976.685 kb on + strand, within HSERO_RS04425 at 976.687 kb on + strand, within HSERO_RS04425 at 976.687 kb on + strand, within HSERO_RS04425 at 976.693 kb on - strand, within HSERO_RS04425 at 976.693 kb on - strand, within HSERO_RS04425 at 976.747 kb on + strand, within HSERO_RS04425 at 976.751 kb on + strand, within HSERO_RS04425 at 976.752 kb on + strand, within HSERO_RS04425 at 976.767 kb on - strand at 976.832 kb on + strand at 976.841 kb on + strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.888 kb on + strand at 976.888 kb on + strand at 976.896 kb on - strand at 976.896 kb on - strand at 976.896 kb on - strand at 976.924 kb on + strand at 976.933 kb on - strand at 976.943 kb on + strand at 976.979 kb on - strand, within HSERO_RS04430 at 977.008 kb on - strand at 977.008 kb on - strand, within HSERO_RS04430
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 974,627 + +7.2 974,635 - HSERO_RS04400 0.12 -1.3 974,708 + HSERO_RS04400 0.49 +0.6 974,708 + HSERO_RS04400 0.49 +0.6 974,708 + HSERO_RS04400 0.49 -0.5 974,716 - HSERO_RS04400 0.53 +0.1 974,736 - HSERO_RS04400 0.64 -2.1 974,747 + +0.3 974,755 - +0.2 974,813 + HSERO_RS04405 0.53 +0.7 974,821 - HSERO_RS04405 0.60 +0.2 974,861 + +1.5 974,908 - HSERO_RS04410 0.23 -0.5 974,940 - HSERO_RS04410 0.39 -0.3 975,014 + HSERO_RS04410 0.76 -0.5 975,014 + -0.2 975,022 - HSERO_RS04410 0.80 +0.4 975,022 - HSERO_RS04410 0.80 +0.0 975,035 + HSERO_RS04410 0.87 -0.8 975,035 + HSERO_RS04410 0.87 +0.0 975,045 + -1.8 975,125 - HSERO_RS04415 0.30 +0.2 975,146 - HSERO_RS04415 0.38 -0.6 975,153 + -1.9 975,153 + HSERO_RS04415 0.41 -1.3 975,153 + HSERO_RS04415 0.41 +0.9 975,161 - HSERO_RS04415 0.44 -1.2 975,161 - HSERO_RS04415 0.44 +0.9 975,161 - HSERO_RS04415 0.44 -0.3 975,161 - HSERO_RS04415 0.44 -0.9 975,163 + HSERO_RS04415 0.45 -0.9 975,163 + HSERO_RS04415 0.45 -1.9 975,171 - HSERO_RS04415 0.49 -0.0 975,171 - HSERO_RS04415 0.49 -0.5 975,171 - -0.4 975,171 - HSERO_RS04415 0.49 -1.5 975,173 - HSERO_RS04415 0.49 -0.1 975,173 - HSERO_RS04415 0.49 -0.9 975,173 - HSERO_RS04415 0.49 -0.2 975,183 + HSERO_RS04415 0.53 -0.1 975,301 + -1.0 975,310 - +0.3 975,310 - +2.1 975,335 - -0.2 975,352 - +0.3 975,396 + +0.3 975,396 + +0.3 975,404 - -0.2 975,404 - -0.1 976,066 + -1.0 976,082 + +0.6 976,089 + -0.7 976,089 + +0.3 976,089 - -0.3 976,091 + -1.4 976,094 - -0.7 976,094 - +0.0 976,094 - +0.1 976,097 - +0.7 976,099 - +1.1 976,099 - +0.1 976,127 + +0.7 976,127 + +1.4 976,136 - +0.2 976,141 + -1.1 976,141 - -0.2 976,141 - -0.1 976,147 + -0.8 976,147 + +0.4 976,147 + -0.8 976,147 + +0.0 976,147 + +0.0 976,147 + -0.9 976,147 + +1.9 976,147 + +0.5 976,147 + -1.0 976,147 + -0.7 976,147 + +0.1 976,147 + -1.7 976,147 + +1.5 976,149 + -0.2 976,155 - +0.2 976,155 - -0.6 976,155 - +1.1 976,155 - +1.0 976,155 - -0.5 976,155 - -0.3 976,155 - -0.5 976,155 - -0.0 976,155 - -1.1 976,155 - -1.0 976,155 - +0.2 976,155 - +0.1 976,168 - -0.3 976,168 - -0.3 976,186 + -0.9 976,196 + +0.7 976,199 - -0.5 976,199 - -1.0 976,201 - +0.0 976,206 + -1.0 976,220 + -0.4 976,228 - +0.5 976,229 - +0.2 976,239 + HSERO_RS04425 0.11 +1.5 976,239 + HSERO_RS04425 0.11 -1.3 976,264 - HSERO_RS04425 0.14 +0.6 976,273 + HSERO_RS04425 0.16 +0.1 976,281 - HSERO_RS04425 0.17 -0.2 976,285 + HSERO_RS04425 0.18 -0.2 976,292 + HSERO_RS04425 0.19 -1.3 976,292 + HSERO_RS04425 0.19 +0.3 976,292 + HSERO_RS04425 0.19 +0.4 976,300 - HSERO_RS04425 0.20 -0.2 976,300 - HSERO_RS04425 0.20 -0.8 976,300 - HSERO_RS04425 0.20 +0.9 976,308 - HSERO_RS04425 0.21 +0.5 976,329 + HSERO_RS04425 0.24 +0.4 976,336 - HSERO_RS04425 0.25 +0.6 976,337 - HSERO_RS04425 0.25 -0.3 976,355 + HSERO_RS04425 0.28 -0.8 976,355 + HSERO_RS04425 0.28 -0.3 976,363 - HSERO_RS04425 0.29 -0.2 976,410 - HSERO_RS04425 0.36 +1.6 976,422 + HSERO_RS04425 0.38 +1.2 976,434 + HSERO_RS04425 0.40 -1.3 976,436 + HSERO_RS04425 0.40 -2.4 976,443 + HSERO_RS04425 0.41 -0.3 976,451 - HSERO_RS04425 0.42 +0.3 976,469 - HSERO_RS04425 0.45 -0.1 976,471 + HSERO_RS04425 0.45 -0.5 976,479 - HSERO_RS04425 0.47 +1.2 976,490 - HSERO_RS04425 0.48 -2.2 976,498 + HSERO_RS04425 0.50 -0.1 976,506 - HSERO_RS04425 0.51 +0.6 976,537 - HSERO_RS04425 0.55 -0.8 976,575 + HSERO_RS04425 0.61 -0.5 976,638 + HSERO_RS04425 0.71 -1.4 976,640 - HSERO_RS04425 0.71 -0.3 976,646 - HSERO_RS04425 0.72 -0.0 976,685 + HSERO_RS04425 0.78 +0.2 976,685 + HSERO_RS04425 0.78 +1.0 976,687 + HSERO_RS04425 0.78 -0.8 976,687 + HSERO_RS04425 0.78 -0.5 976,693 - HSERO_RS04425 0.79 +0.4 976,693 - HSERO_RS04425 0.79 -0.6 976,747 + HSERO_RS04425 0.87 +0.3 976,751 + HSERO_RS04425 0.88 +0.1 976,752 + HSERO_RS04425 0.88 -0.1 976,767 - -0.3 976,832 + +1.4 976,841 + -0.0 976,849 - -0.4 976,849 - -0.3 976,888 + -0.2 976,888 + -2.3 976,896 - -0.9 976,896 - -0.1 976,896 - +1.8 976,924 + +0.2 976,933 - +0.7 976,943 + -1.1 976,979 - HSERO_RS04430 0.12 -0.1 977,008 - +0.4 977,008 - HSERO_RS04430 0.14 -0.2
Or see this region's nucleotide sequence