Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04205

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04200 and HSERO_RS04205 are separated by 345 nucleotidesHSERO_RS04205 and HSERO_RS04210 are separated by 104 nucleotides HSERO_RS04200: HSERO_RS04200 - diguanylate cyclase, at 921,012 to 923,954 _RS04200 HSERO_RS04205: HSERO_RS04205 - membrane protein, at 924,300 to 924,962 _RS04205 HSERO_RS04210: HSERO_RS04210 - N-acetylmuramoyl-L-alanine amidase, at 925,067 to 926,428 _RS04210 Position (kb) 924 925Strain fitness (log2 ratio) -2 -1 0 1at 923.324 kb on + strand, within HSERO_RS04200at 923.332 kb on - strand, within HSERO_RS04200at 923.724 kb on + strandat 923.750 kb on + strandat 923.826 kb on - strandat 923.943 kb on - strandat 923.994 kb on + strandat 924.003 kb on - strandat 924.096 kb on + strandat 924.296 kb on - strandat 924.359 kb on + strandat 924.363 kb on + strandat 924.380 kb on + strand, within HSERO_RS04205at 924.403 kb on - strandat 924.588 kb on + strand, within HSERO_RS04205at 924.743 kb on - strand, within HSERO_RS04205at 924.761 kb on + strand, within HSERO_RS04205at 924.782 kb on + strand, within HSERO_RS04205at 924.970 kb on - strandat 925.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
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923,324 + HSERO_RS04200 0.79 -0.5
923,332 - HSERO_RS04200 0.79 -1.5
923,724 + -2.3
923,750 + -0.0
923,826 - -2.7
923,943 - -1.0
923,994 + -0.9
924,003 - -0.5
924,096 + -0.4
924,296 - +0.2
924,359 + +0.0
924,363 + -0.2
924,380 + HSERO_RS04205 0.12 -0.6
924,403 - +1.1
924,588 + HSERO_RS04205 0.43 +0.6
924,743 - HSERO_RS04205 0.67 +0.1
924,761 + HSERO_RS04205 0.70 +0.1
924,782 + HSERO_RS04205 0.73 -0.8
924,970 - +0.0
925,069 + -0.7

Or see this region's nucleotide sequence