Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02670 and HSERO_RS02675 are separated by 131 nucleotides HSERO_RS02675 and HSERO_RS02680 are separated by 323 nucleotides
HSERO_RS02670: HSERO_RS02670 - LysR family transcriptional regulator, at 588,015 to 588,959
_RS02670
HSERO_RS02675: HSERO_RS02675 - transporter, at 589,091 to 590,545
_RS02675
HSERO_RS02680: HSERO_RS02680 - methyl-accepting chemotaxis protein, at 590,869 to 592,512
_RS02680
Position (kb) 589
590
591 Strain fitness (log2 ratio) -2
-1
0
1
2 at 588.218 kb on - strand, within HSERO_RS02670 at 588.242 kb on + strand, within HSERO_RS02670 at 588.250 kb on - strand, within HSERO_RS02670 at 588.269 kb on - strand, within HSERO_RS02670 at 588.292 kb on + strand, within HSERO_RS02670 at 588.493 kb on - strand, within HSERO_RS02670 at 588.829 kb on + strand, within HSERO_RS02670 at 588.839 kb on + strand, within HSERO_RS02670 at 588.938 kb on + strand at 588.947 kb on - strand at 589.056 kb on + strand at 589.235 kb on + strand at 589.303 kb on - strand, within HSERO_RS02675 at 589.303 kb on - strand, within HSERO_RS02675 at 589.351 kb on + strand, within HSERO_RS02675 at 589.359 kb on - strand, within HSERO_RS02675 at 589.385 kb on + strand, within HSERO_RS02675 at 589.389 kb on - strand, within HSERO_RS02675 at 589.392 kb on + strand, within HSERO_RS02675 at 589.468 kb on - strand, within HSERO_RS02675 at 589.468 kb on - strand, within HSERO_RS02675 at 589.537 kb on - strand, within HSERO_RS02675 at 589.541 kb on + strand, within HSERO_RS02675 at 589.582 kb on - strand, within HSERO_RS02675 at 589.712 kb on - strand, within HSERO_RS02675 at 589.763 kb on + strand, within HSERO_RS02675 at 589.967 kb on + strand, within HSERO_RS02675 at 590.002 kb on - strand, within HSERO_RS02675 at 590.046 kb on + strand, within HSERO_RS02675 at 590.168 kb on - strand, within HSERO_RS02675 at 590.199 kb on - strand, within HSERO_RS02675 at 590.224 kb on + strand, within HSERO_RS02675 at 590.256 kb on - strand, within HSERO_RS02675 at 590.264 kb on - strand, within HSERO_RS02675 at 590.285 kb on + strand, within HSERO_RS02675 at 590.318 kb on - strand, within HSERO_RS02675 at 590.689 kb on - strand at 590.689 kb on - strand at 590.743 kb on + strand at 590.751 kb on - strand at 590.830 kb on - strand at 590.899 kb on + strand at 590.953 kb on + strand at 590.958 kb on - strand at 590.958 kb on - strand at 590.991 kb on - strand at 591.074 kb on + strand, within HSERO_RS02680 at 591.177 kb on + strand, within HSERO_RS02680 at 591.264 kb on + strand, within HSERO_RS02680 at 591.325 kb on + strand, within HSERO_RS02680 at 591.483 kb on - strand, within HSERO_RS02680 at 591.543 kb on - strand, within HSERO_RS02680
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 588,218 - HSERO_RS02670 0.21 +1.4 588,242 + HSERO_RS02670 0.24 +0.3 588,250 - HSERO_RS02670 0.25 -1.3 588,269 - HSERO_RS02670 0.27 -0.6 588,292 + HSERO_RS02670 0.29 +0.9 588,493 - HSERO_RS02670 0.51 -0.6 588,829 + HSERO_RS02670 0.86 +0.3 588,839 + HSERO_RS02670 0.87 -0.7 588,938 + -0.1 588,947 - -0.0 589,056 + -0.2 589,235 + +0.4 589,303 - HSERO_RS02675 0.15 -0.2 589,303 - HSERO_RS02675 0.15 -0.8 589,351 + HSERO_RS02675 0.18 -0.3 589,359 - HSERO_RS02675 0.18 +0.3 589,385 + HSERO_RS02675 0.20 -0.2 589,389 - HSERO_RS02675 0.20 +2.0 589,392 + HSERO_RS02675 0.21 -1.1 589,468 - HSERO_RS02675 0.26 -0.1 589,468 - HSERO_RS02675 0.26 -1.4 589,537 - HSERO_RS02675 0.31 +0.3 589,541 + HSERO_RS02675 0.31 +0.7 589,582 - HSERO_RS02675 0.34 -0.7 589,712 - HSERO_RS02675 0.43 +2.0 589,763 + HSERO_RS02675 0.46 +1.3 589,967 + HSERO_RS02675 0.60 +0.3 590,002 - HSERO_RS02675 0.63 +1.5 590,046 + HSERO_RS02675 0.66 +1.5 590,168 - HSERO_RS02675 0.74 +0.2 590,199 - HSERO_RS02675 0.76 +0.6 590,224 + HSERO_RS02675 0.78 +0.5 590,256 - HSERO_RS02675 0.80 +0.5 590,264 - HSERO_RS02675 0.81 -0.3 590,285 + HSERO_RS02675 0.82 +0.3 590,318 - HSERO_RS02675 0.84 +1.2 590,689 - -0.2 590,689 - -0.3 590,743 + -0.5 590,751 - -0.0 590,830 - -0.5 590,899 + -0.9 590,953 + -0.8 590,958 - +0.7 590,958 - +1.2 590,991 - +0.7 591,074 + HSERO_RS02680 0.12 +0.0 591,177 + HSERO_RS02680 0.19 -1.4 591,264 + HSERO_RS02680 0.24 -1.0 591,325 + HSERO_RS02680 0.28 -2.3 591,483 - HSERO_RS02680 0.37 -0.5 591,543 - HSERO_RS02680 0.41 +0.1
Or see this region's nucleotide sequence