Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02650 and HSERO_RS02655 are separated by 90 nucleotides HSERO_RS02655 and HSERO_RS02660 are separated by 318 nucleotides
HSERO_RS02650: HSERO_RS02650 - dihydroxy-acid dehydratase, at 581,219 to 583,081
_RS02650
HSERO_RS02655: HSERO_RS02655 - transporter, at 583,172 to 585,052
_RS02655
HSERO_RS02660: HSERO_RS02660 - TonB-dependent receptor, at 585,371 to 587,440
_RS02660
Position (kb) 583
584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 582.203 kb on + strand, within HSERO_RS02650 at 582.222 kb on + strand, within HSERO_RS02650 at 582.228 kb on + strand, within HSERO_RS02650 at 582.257 kb on + strand, within HSERO_RS02650 at 582.299 kb on - strand, within HSERO_RS02650 at 582.299 kb on - strand, within HSERO_RS02650 at 582.637 kb on + strand, within HSERO_RS02650 at 582.637 kb on + strand, within HSERO_RS02650 at 582.768 kb on - strand, within HSERO_RS02650 at 582.824 kb on - strand, within HSERO_RS02650 at 583.030 kb on - strand at 583.156 kb on - strand at 583.341 kb on + strand at 583.359 kb on - strand at 583.464 kb on - strand, within HSERO_RS02655 at 583.816 kb on + strand, within HSERO_RS02655 at 583.911 kb on - strand, within HSERO_RS02655 at 583.911 kb on - strand, within HSERO_RS02655 at 584.049 kb on + strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.168 kb on + strand, within HSERO_RS02655 at 584.280 kb on + strand, within HSERO_RS02655 at 584.280 kb on + strand, within HSERO_RS02655 at 584.360 kb on - strand, within HSERO_RS02655 at 584.516 kb on - strand, within HSERO_RS02655 at 584.579 kb on + strand, within HSERO_RS02655 at 584.630 kb on - strand, within HSERO_RS02655 at 584.736 kb on + strand, within HSERO_RS02655 at 584.870 kb on + strand at 585.253 kb on + strand at 585.512 kb on + strand at 585.619 kb on - strand, within HSERO_RS02660 at 585.732 kb on - strand, within HSERO_RS02660 at 585.733 kb on + strand, within HSERO_RS02660 at 585.899 kb on + strand, within HSERO_RS02660
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 582,203 + HSERO_RS02650 0.53 -2.5 582,222 + HSERO_RS02650 0.54 -1.8 582,228 + HSERO_RS02650 0.54 -2.1 582,257 + HSERO_RS02650 0.56 -1.1 582,299 - HSERO_RS02650 0.58 -3.1 582,299 - HSERO_RS02650 0.58 -2.5 582,637 + HSERO_RS02650 0.76 -1.1 582,637 + HSERO_RS02650 0.76 -0.8 582,768 - HSERO_RS02650 0.83 -2.4 582,824 - HSERO_RS02650 0.86 -2.0 583,030 - -1.9 583,156 - +0.4 583,341 + +0.4 583,359 - +1.3 583,464 - HSERO_RS02655 0.16 -0.3 583,816 + HSERO_RS02655 0.34 -0.4 583,911 - HSERO_RS02655 0.39 -0.8 583,911 - HSERO_RS02655 0.39 -1.4 584,049 + HSERO_RS02655 0.47 +0.9 584,057 - HSERO_RS02655 0.47 +0.0 584,057 - HSERO_RS02655 0.47 +0.6 584,057 - HSERO_RS02655 0.47 -0.9 584,168 + HSERO_RS02655 0.53 +1.4 584,280 + HSERO_RS02655 0.59 +0.2 584,280 + HSERO_RS02655 0.59 +0.8 584,360 - HSERO_RS02655 0.63 -0.9 584,516 - HSERO_RS02655 0.71 -0.6 584,579 + HSERO_RS02655 0.75 -0.3 584,630 - HSERO_RS02655 0.78 -0.8 584,736 + HSERO_RS02655 0.83 -0.4 584,870 + -0.7 585,253 + +0.9 585,512 + +2.7 585,619 - HSERO_RS02660 0.12 -0.0 585,732 - HSERO_RS02660 0.17 +0.5 585,733 + HSERO_RS02660 0.17 +1.0 585,899 + HSERO_RS02660 0.26 -0.1
Or see this region's nucleotide sequence