Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01265 and HSERO_RS01270 are separated by 98 nucleotides HSERO_RS01270 and HSERO_RS01275 are separated by 527 nucleotides
HSERO_RS01265: HSERO_RS01265 - acetyl-CoA acetyltransferase, at 266,442 to 267,638
_RS01265
HSERO_RS01270: HSERO_RS01270 - enoyl-CoA hydratase, at 267,737 to 268,507
_RS01270
HSERO_RS01275: HSERO_RS01275 - FAD-dependent oxidoreductase, at 269,035 to 270,312
_RS01275
Position (kb) 267
268
269 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 267.151 kb on - strand, within HSERO_RS01265 at 267.632 kb on + strand at 267.813 kb on - strand at 268.004 kb on + strand, within HSERO_RS01270 at 268.129 kb on + strand, within HSERO_RS01270 at 268.230 kb on - strand, within HSERO_RS01270 at 268.388 kb on + strand, within HSERO_RS01270 at 268.464 kb on - strand at 268.571 kb on - strand at 268.575 kb on + strand at 268.582 kb on - strand at 268.584 kb on + strand at 268.585 kb on + strand at 268.585 kb on + strand at 268.588 kb on + strand at 268.588 kb on + strand at 268.593 kb on - strand at 268.593 kb on - strand at 268.593 kb on - strand at 268.593 kb on - strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.641 kb on + strand at 268.649 kb on - strand at 268.649 kb on - strand at 268.649 kb on - strand at 268.649 kb on - strand at 268.649 kb on - strand at 268.650 kb on + strand at 268.660 kb on - strand at 268.734 kb on + strand at 268.757 kb on - strand at 268.757 kb on - strand at 268.757 kb on - strand at 268.757 kb on - strand at 268.757 kb on - strand at 268.811 kb on + strand at 268.819 kb on - strand at 268.819 kb on - strand at 268.819 kb on - strand at 268.834 kb on - strand at 268.836 kb on - strand at 268.836 kb on - strand at 268.876 kb on + strand at 268.884 kb on - strand at 268.884 kb on - strand at 268.885 kb on - strand at 268.922 kb on + strand at 268.939 kb on + strand at 268.939 kb on + strand at 268.947 kb on - strand at 268.973 kb on + strand at 269.029 kb on - strand at 269.029 kb on - strand at 269.263 kb on + strand, within HSERO_RS01275 at 269.305 kb on - strand, within HSERO_RS01275 at 269.414 kb on - strand, within HSERO_RS01275
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 267,151 - HSERO_RS01265 0.59 -3.2 267,632 + +0.6 267,813 - -1.8 268,004 + HSERO_RS01270 0.35 +2.3 268,129 + HSERO_RS01270 0.51 -0.4 268,230 - HSERO_RS01270 0.64 -1.2 268,388 + HSERO_RS01270 0.84 +0.7 268,464 - +2.2 268,571 - +0.1 268,575 + +0.7 268,582 - -1.5 268,584 + +0.2 268,585 + -0.1 268,585 + -0.6 268,588 + -0.1 268,588 + -0.7 268,593 - -0.4 268,593 - -2.0 268,593 - +1.0 268,593 - +1.7 268,641 + +0.1 268,641 + -0.1 268,641 + -1.0 268,641 + +1.3 268,641 + +1.0 268,641 + +0.2 268,641 + +1.2 268,641 + +1.3 268,641 + +0.6 268,641 + +0.7 268,641 + +0.6 268,641 + +0.5 268,641 + -0.1 268,641 + -0.8 268,649 - -0.2 268,649 - +0.0 268,649 - -0.6 268,649 - -0.7 268,649 - -0.5 268,650 + -0.3 268,660 - +1.1 268,734 + -0.6 268,757 - -0.0 268,757 - -1.1 268,757 - +0.8 268,757 - +0.5 268,757 - -1.8 268,811 + -1.4 268,819 - -0.7 268,819 - +0.6 268,819 - +0.9 268,834 - -0.2 268,836 - -1.3 268,836 - -0.6 268,876 + +1.6 268,884 - -2.6 268,884 - +0.3 268,885 - -1.8 268,922 + -0.7 268,939 + +0.1 268,939 + -1.2 268,947 - -0.3 268,973 + -1.1 269,029 - +0.1 269,029 - -5.1 269,263 + HSERO_RS01275 0.18 -0.4 269,305 - HSERO_RS01275 0.21 -1.5 269,414 - HSERO_RS01275 0.30 +0.0
Or see this region's nucleotide sequence