Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00930 and HSERO_RS00935 are separated by 17 nucleotides HSERO_RS00935 and HSERO_RS00940 are separated by 224 nucleotides HSERO_RS00940 and HSERO_RS00945 are separated by 109 nucleotides
HSERO_RS00930: HSERO_RS00930 - hypothetical protein, at 196,282 to 197,823
_RS00930
HSERO_RS00935: HSERO_RS00935 - TonB-denpendent receptor, at 197,841 to 199,955
_RS00935
HSERO_RS00940: HSERO_RS00940 - general secretion pathway protein, at 200,180 to 200,647
_RS00940
HSERO_RS00945: HSERO_RS00945 - frataxin, at 200,757 to 201,089
_RS00945
Position (kb) 197
198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 196.850 kb on + strand, within HSERO_RS00930 at 196.885 kb on - strand, within HSERO_RS00930 at 196.990 kb on + strand, within HSERO_RS00930 at 197.089 kb on - strand, within HSERO_RS00930 at 197.175 kb on - strand, within HSERO_RS00930 at 197.216 kb on + strand, within HSERO_RS00930 at 197.267 kb on - strand, within HSERO_RS00930 at 197.299 kb on + strand, within HSERO_RS00930 at 197.325 kb on + strand, within HSERO_RS00930 at 197.343 kb on + strand, within HSERO_RS00930 at 197.379 kb on + strand, within HSERO_RS00930 at 197.399 kb on - strand, within HSERO_RS00930 at 197.413 kb on + strand, within HSERO_RS00930 at 197.475 kb on + strand, within HSERO_RS00930 at 197.530 kb on + strand, within HSERO_RS00930 at 197.640 kb on + strand, within HSERO_RS00930 at 197.707 kb on + strand at 197.715 kb on - strand at 197.715 kb on - strand at 197.818 kb on + strand at 197.858 kb on + strand at 197.961 kb on - strand at 197.963 kb on - strand at 198.023 kb on + strand at 198.023 kb on + strand at 198.031 kb on - strand at 198.233 kb on + strand, within HSERO_RS00935 at 198.321 kb on - strand, within HSERO_RS00935 at 198.445 kb on + strand, within HSERO_RS00935 at 198.459 kb on - strand, within HSERO_RS00935 at 198.482 kb on + strand, within HSERO_RS00935 at 198.490 kb on - strand, within HSERO_RS00935 at 198.605 kb on + strand, within HSERO_RS00935 at 198.613 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.695 kb on - strand, within HSERO_RS00935 at 198.719 kb on - strand, within HSERO_RS00935 at 199.170 kb on - strand, within HSERO_RS00935 at 199.344 kb on + strand, within HSERO_RS00935 at 199.351 kb on + strand, within HSERO_RS00935 at 199.448 kb on + strand, within HSERO_RS00935 at 199.473 kb on + strand, within HSERO_RS00935 at 199.596 kb on + strand, within HSERO_RS00935 at 199.661 kb on + strand, within HSERO_RS00935 at 199.669 kb on - strand, within HSERO_RS00935 at 199.686 kb on - strand, within HSERO_RS00935 at 199.740 kb on - strand, within HSERO_RS00935 at 199.764 kb on + strand at 199.798 kb on + strand at 199.846 kb on - strand at 199.858 kb on + strand at 199.925 kb on - strand at 199.977 kb on - strand at 200.064 kb on - strand at 200.183 kb on + strand at 200.197 kb on + strand at 200.282 kb on - strand, within HSERO_RS00940 at 200.284 kb on + strand, within HSERO_RS00940 at 200.343 kb on + strand, within HSERO_RS00940 at 200.390 kb on + strand, within HSERO_RS00940 at 200.508 kb on + strand, within HSERO_RS00940 at 200.627 kb on + strand at 200.799 kb on - strand, within HSERO_RS00945
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 196,850 + HSERO_RS00930 0.37 +1.1 196,885 - HSERO_RS00930 0.39 -0.6 196,990 + HSERO_RS00930 0.46 +1.0 197,089 - HSERO_RS00930 0.52 +1.8 197,175 - HSERO_RS00930 0.58 -0.0 197,216 + HSERO_RS00930 0.61 +0.2 197,267 - HSERO_RS00930 0.64 -0.5 197,299 + HSERO_RS00930 0.66 +1.4 197,325 + HSERO_RS00930 0.68 +3.3 197,343 + HSERO_RS00930 0.69 -0.0 197,379 + HSERO_RS00930 0.71 -0.7 197,399 - HSERO_RS00930 0.72 +0.2 197,413 + HSERO_RS00930 0.73 -0.1 197,475 + HSERO_RS00930 0.77 -0.1 197,530 + HSERO_RS00930 0.81 +0.5 197,640 + HSERO_RS00930 0.88 +1.0 197,707 + -0.1 197,715 - +0.2 197,715 - -0.1 197,818 + -0.2 197,858 + -0.6 197,961 - +0.3 197,963 - -1.6 198,023 + -0.4 198,023 + +0.4 198,031 - +1.2 198,233 + HSERO_RS00935 0.19 -0.2 198,321 - HSERO_RS00935 0.23 -0.3 198,445 + HSERO_RS00935 0.29 +0.0 198,459 - HSERO_RS00935 0.29 -0.2 198,482 + HSERO_RS00935 0.30 -0.3 198,490 - HSERO_RS00935 0.31 -0.3 198,605 + HSERO_RS00935 0.36 -0.2 198,613 - HSERO_RS00935 0.37 -0.1 198,685 - HSERO_RS00935 0.40 +0.9 198,685 - HSERO_RS00935 0.40 -0.1 198,685 - HSERO_RS00935 0.40 +0.9 198,685 - HSERO_RS00935 0.40 -0.7 198,695 - HSERO_RS00935 0.40 +6.6 198,719 - HSERO_RS00935 0.42 -0.8 199,170 - HSERO_RS00935 0.63 +0.2 199,344 + HSERO_RS00935 0.71 +0.0 199,351 + HSERO_RS00935 0.71 +3.3 199,448 + HSERO_RS00935 0.76 -0.3 199,473 + HSERO_RS00935 0.77 -2.0 199,596 + HSERO_RS00935 0.83 +0.2 199,661 + HSERO_RS00935 0.86 -1.1 199,669 - HSERO_RS00935 0.86 -0.0 199,686 - HSERO_RS00935 0.87 +1.6 199,740 - HSERO_RS00935 0.90 +0.2 199,764 + +1.4 199,798 + -0.2 199,846 - -2.4 199,858 + +0.8 199,925 - +0.5 199,977 - -0.7 200,064 - -0.8 200,183 + +2.5 200,197 + -0.8 200,282 - HSERO_RS00940 0.22 +1.2 200,284 + HSERO_RS00940 0.22 -0.7 200,343 + HSERO_RS00940 0.35 -0.9 200,390 + HSERO_RS00940 0.45 -0.3 200,508 + HSERO_RS00940 0.70 +1.7 200,627 + +0.0 200,799 - HSERO_RS00945 0.13 -2.0
Or see this region's nucleotide sequence