Experiment: PYE with Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02120 and CCNA_02121 are separated by 142 nucleotides CCNA_02121 and CCNA_02122 overlap by 4 nucleotides
CCNA_02120: CCNA_02120 - tetratricopeptide repeat family protein, at 2,270,198 to 2,271,166
_02120
CCNA_02121: CCNA_02121 - ATP-dependent helicase, at 2,271,309 to 2,273,888
_02121
CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data) , at 2,273,885 to 2,274,592
_02122
Position (kb)
2271
2272
2273
2274 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2270.329 kb on - strand, within CCNA_02120 at 2270.340 kb on - strand, within CCNA_02120 at 2270.349 kb on + strand, within CCNA_02120 at 2270.351 kb on + strand, within CCNA_02120 at 2270.368 kb on + strand, within CCNA_02120 at 2270.459 kb on + strand, within CCNA_02120 at 2270.459 kb on + strand, within CCNA_02120 at 2270.543 kb on - strand, within CCNA_02120 at 2270.545 kb on - strand, within CCNA_02120 at 2270.554 kb on + strand, within CCNA_02120 at 2270.609 kb on + strand, within CCNA_02120 at 2270.609 kb on + strand, within CCNA_02120 at 2270.617 kb on - strand, within CCNA_02120 at 2270.663 kb on + strand, within CCNA_02120 at 2270.686 kb on + strand, within CCNA_02120 at 2270.686 kb on + strand, within CCNA_02120 at 2270.717 kb on + strand, within CCNA_02120 at 2270.747 kb on + strand, within CCNA_02120 at 2270.747 kb on + strand, within CCNA_02120 at 2270.778 kb on - strand, within CCNA_02120 at 2270.783 kb on - strand, within CCNA_02120 at 2270.807 kb on - strand, within CCNA_02120 at 2270.822 kb on + strand, within CCNA_02120 at 2270.830 kb on - strand, within CCNA_02120 at 2270.846 kb on + strand, within CCNA_02120 at 2270.848 kb on + strand, within CCNA_02120 at 2270.865 kb on - strand, within CCNA_02120 at 2270.963 kb on - strand, within CCNA_02120 at 2271.032 kb on - strand, within CCNA_02120 at 2271.032 kb on - strand, within CCNA_02120 at 2271.100 kb on - strand at 2271.117 kb on + strand at 2271.117 kb on + strand at 2271.125 kb on - strand at 2271.125 kb on - strand at 2271.134 kb on + strand at 2271.169 kb on - strand at 2271.176 kb on - strand at 2271.182 kb on - strand at 2271.184 kb on - strand at 2271.185 kb on + strand at 2271.213 kb on - strand at 2271.219 kb on + strand at 2271.226 kb on + strand at 2271.248 kb on - strand at 2271.341 kb on - strand at 2271.344 kb on + strand at 2271.346 kb on - strand at 2271.393 kb on + strand at 2271.401 kb on - strand at 2271.412 kb on - strand at 2271.423 kb on + strand at 2271.431 kb on - strand at 2271.450 kb on + strand at 2271.450 kb on + strand at 2271.497 kb on + strand at 2271.504 kb on - strand at 2271.509 kb on + strand at 2271.526 kb on + strand at 2271.534 kb on - strand at 2271.534 kb on - strand at 2271.685 kb on + strand, within CCNA_02121 at 2271.685 kb on + strand, within CCNA_02121 at 2271.690 kb on + strand, within CCNA_02121 at 2271.703 kb on - strand, within CCNA_02121 at 2271.719 kb on + strand, within CCNA_02121 at 2271.719 kb on + strand, within CCNA_02121 at 2271.724 kb on + strand, within CCNA_02121 at 2271.727 kb on - strand, within CCNA_02121 at 2271.756 kb on + strand, within CCNA_02121 at 2271.761 kb on + strand, within CCNA_02121 at 2271.894 kb on - strand, within CCNA_02121 at 2271.921 kb on + strand, within CCNA_02121 at 2271.961 kb on - strand, within CCNA_02121 at 2271.989 kb on - strand, within CCNA_02121 at 2272.004 kb on - strand, within CCNA_02121 at 2272.009 kb on - strand, within CCNA_02121 at 2272.032 kb on - strand, within CCNA_02121 at 2272.049 kb on + strand, within CCNA_02121 at 2272.049 kb on + strand, within CCNA_02121 at 2272.062 kb on - strand, within CCNA_02121 at 2272.104 kb on - strand, within CCNA_02121 at 2272.124 kb on - strand, within CCNA_02121 at 2272.134 kb on + strand, within CCNA_02121 at 2272.142 kb on - strand, within CCNA_02121 at 2272.142 kb on - strand, within CCNA_02121 at 2272.147 kb on - strand, within CCNA_02121 at 2272.266 kb on - strand, within CCNA_02121 at 2272.281 kb on + strand, within CCNA_02121 at 2272.281 kb on + strand, within CCNA_02121 at 2272.286 kb on + strand, within CCNA_02121 at 2272.293 kb on + strand, within CCNA_02121 at 2272.293 kb on + strand, within CCNA_02121 at 2272.328 kb on + strand, within CCNA_02121 at 2272.336 kb on - strand, within CCNA_02121 at 2272.373 kb on + strand, within CCNA_02121 at 2272.378 kb on + strand, within CCNA_02121 at 2272.381 kb on - strand, within CCNA_02121 at 2272.406 kb on - strand, within CCNA_02121 at 2272.406 kb on - strand, within CCNA_02121 at 2272.406 kb on - strand, within CCNA_02121 at 2272.472 kb on - strand, within CCNA_02121 at 2272.502 kb on + strand, within CCNA_02121 at 2272.553 kb on - strand, within CCNA_02121 at 2272.624 kb on + strand, within CCNA_02121 at 2272.637 kb on + strand, within CCNA_02121 at 2272.638 kb on + strand, within CCNA_02121 at 2272.649 kb on + strand, within CCNA_02121 at 2272.654 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.714 kb on - strand, within CCNA_02121 at 2272.714 kb on - strand, within CCNA_02121 at 2272.731 kb on + strand, within CCNA_02121 at 2272.754 kb on + strand, within CCNA_02121 at 2272.783 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.831 kb on - strand, within CCNA_02121 at 2272.831 kb on - strand, within CCNA_02121 at 2272.906 kb on - strand, within CCNA_02121 at 2273.015 kb on + strand at 2273.018 kb on - strand, within CCNA_02121 at 2273.023 kb on - strand, within CCNA_02121 at 2273.101 kb on + strand, within CCNA_02121 at 2273.117 kb on + strand, within CCNA_02121 at 2273.160 kb on - strand, within CCNA_02121 at 2273.178 kb on - strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.252 kb on + strand, within CCNA_02121 at 2273.260 kb on - strand, within CCNA_02121 at 2273.260 kb on - strand, within CCNA_02121 at 2273.277 kb on + strand at 2273.311 kb on + strand, within CCNA_02121 at 2273.320 kb on + strand, within CCNA_02121 at 2273.333 kb on - strand, within CCNA_02121 at 2273.337 kb on + strand, within CCNA_02121 at 2273.345 kb on - strand, within CCNA_02121 at 2273.373 kb on - strand, within CCNA_02121 at 2273.425 kb on + strand, within CCNA_02121 at 2273.434 kb on + strand, within CCNA_02121 at 2273.479 kb on + strand, within CCNA_02121 at 2273.488 kb on - strand, within CCNA_02121 at 2273.496 kb on + strand, within CCNA_02121 at 2273.561 kb on + strand, within CCNA_02121 at 2273.615 kb on + strand, within CCNA_02121 at 2273.618 kb on - strand, within CCNA_02121 at 2273.623 kb on - strand, within CCNA_02121 at 2273.623 kb on - strand, within CCNA_02121 at 2273.637 kb on + strand at 2273.759 kb on + strand at 2273.759 kb on + strand at 2273.762 kb on - strand at 2273.765 kb on + strand at 2273.780 kb on - strand at 2273.974 kb on + strand, within CCNA_02122 at 2273.974 kb on + strand, within CCNA_02122 at 2273.995 kb on + strand, within CCNA_02122 at 2274.061 kb on - strand, within CCNA_02122 at 2274.089 kb on - strand, within CCNA_02122 at 2274.183 kb on + strand, within CCNA_02122 at 2274.207 kb on + strand, within CCNA_02122 at 2274.219 kb on + strand, within CCNA_02122 at 2274.229 kb on + strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.269 kb on - strand, within CCNA_02122 at 2274.270 kb on - strand, within CCNA_02122 at 2274.280 kb on - strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.375 kb on - strand, within CCNA_02122 at 2274.380 kb on + strand, within CCNA_02122 at 2274.453 kb on - strand, within CCNA_02122 at 2274.532 kb on - strand at 2274.556 kb on - strand at 2274.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chlorate 40 mM remove 2,270,329 - CCNA_02120 0.14 -1.3 2,270,340 - CCNA_02120 0.15 -0.7 2,270,349 + CCNA_02120 0.16 -0.7 2,270,351 + CCNA_02120 0.16 -0.8 2,270,368 + CCNA_02120 0.18 -0.5 2,270,459 + CCNA_02120 0.27 -1.7 2,270,459 + CCNA_02120 0.27 -1.3 2,270,543 - CCNA_02120 0.36 -0.9 2,270,545 - CCNA_02120 0.36 -2.3 2,270,554 + CCNA_02120 0.37 -3.3 2,270,609 + CCNA_02120 0.42 -2.1 2,270,609 + CCNA_02120 0.42 -0.5 2,270,617 - CCNA_02120 0.43 -0.6 2,270,663 + CCNA_02120 0.48 -2.8 2,270,686 + CCNA_02120 0.50 -1.4 2,270,686 + CCNA_02120 0.50 +1.4 2,270,717 + CCNA_02120 0.54 -2.2 2,270,747 + CCNA_02120 0.57 -0.6 2,270,747 + CCNA_02120 0.57 -1.3 2,270,778 - CCNA_02120 0.60 -2.5 2,270,783 - CCNA_02120 0.60 -1.2 2,270,807 - CCNA_02120 0.63 -2.2 2,270,822 + CCNA_02120 0.64 -1.7 2,270,830 - CCNA_02120 0.65 -1.0 2,270,846 + CCNA_02120 0.67 -1.8 2,270,848 + CCNA_02120 0.67 -1.2 2,270,865 - CCNA_02120 0.69 +1.8 2,270,963 - CCNA_02120 0.79 -1.7 2,271,032 - CCNA_02120 0.86 +1.6 2,271,032 - CCNA_02120 0.86 -1.2 2,271,100 - -0.9 2,271,117 + -0.5 2,271,117 + -0.7 2,271,125 - -1.5 2,271,125 - -1.1 2,271,134 + +1.7 2,271,169 - -0.6 2,271,176 - +1.0 2,271,182 - -1.1 2,271,184 - +0.1 2,271,185 + +1.2 2,271,213 - +0.9 2,271,219 + -0.3 2,271,226 + +0.8 2,271,248 - +0.7 2,271,341 - +0.1 2,271,344 + -0.3 2,271,346 - -0.2 2,271,393 + -1.3 2,271,401 - -1.6 2,271,412 - -0.9 2,271,423 + +0.3 2,271,431 - -0.9 2,271,450 + -0.0 2,271,450 + -2.9 2,271,497 + -0.3 2,271,504 - +1.5 2,271,509 + -1.4 2,271,526 + -2.7 2,271,534 - -2.2 2,271,534 - -0.6 2,271,685 + CCNA_02121 0.15 -0.8 2,271,685 + CCNA_02121 0.15 -2.0 2,271,690 + CCNA_02121 0.15 -0.7 2,271,703 - CCNA_02121 0.15 +0.3 2,271,719 + CCNA_02121 0.16 -1.5 2,271,719 + CCNA_02121 0.16 +0.2 2,271,724 + CCNA_02121 0.16 +1.9 2,271,727 - CCNA_02121 0.16 -1.7 2,271,756 + CCNA_02121 0.17 -2.8 2,271,761 + CCNA_02121 0.18 -0.4 2,271,894 - CCNA_02121 0.23 -1.9 2,271,921 + CCNA_02121 0.24 +1.0 2,271,961 - CCNA_02121 0.25 -1.1 2,271,989 - CCNA_02121 0.26 -0.7 2,272,004 - CCNA_02121 0.27 -0.5 2,272,009 - CCNA_02121 0.27 -0.8 2,272,032 - CCNA_02121 0.28 -0.5 2,272,049 + CCNA_02121 0.29 +0.3 2,272,049 + CCNA_02121 0.29 +0.8 2,272,062 - CCNA_02121 0.29 -0.7 2,272,104 - CCNA_02121 0.31 -0.1 2,272,124 - CCNA_02121 0.32 +1.0 2,272,134 + CCNA_02121 0.32 -1.1 2,272,142 - CCNA_02121 0.32 -0.2 2,272,142 - CCNA_02121 0.32 +0.3 2,272,147 - CCNA_02121 0.32 +1.8 2,272,266 - CCNA_02121 0.37 +0.2 2,272,281 + CCNA_02121 0.38 -1.0 2,272,281 + CCNA_02121 0.38 -1.4 2,272,286 + CCNA_02121 0.38 -0.7 2,272,293 + CCNA_02121 0.38 -0.3 2,272,293 + CCNA_02121 0.38 +0.2 2,272,328 + CCNA_02121 0.39 -1.7 2,272,336 - CCNA_02121 0.40 -2.5 2,272,373 + CCNA_02121 0.41 +0.9 2,272,378 + CCNA_02121 0.41 -0.0 2,272,381 - CCNA_02121 0.42 +0.0 2,272,406 - CCNA_02121 0.43 -1.7 2,272,406 - CCNA_02121 0.43 -0.5 2,272,406 - CCNA_02121 0.43 -1.3 2,272,472 - CCNA_02121 0.45 +1.0 2,272,502 + CCNA_02121 0.46 +1.0 2,272,553 - CCNA_02121 0.48 -1.5 2,272,624 + CCNA_02121 0.51 -0.4 2,272,637 + CCNA_02121 0.51 -2.1 2,272,638 + CCNA_02121 0.52 -0.1 2,272,649 + CCNA_02121 0.52 -0.0 2,272,654 + CCNA_02121 0.52 -0.5 2,272,706 + CCNA_02121 0.54 +1.2 2,272,706 + CCNA_02121 0.54 +1.3 2,272,706 + CCNA_02121 0.54 -2.9 2,272,706 + CCNA_02121 0.54 +0.3 2,272,706 + CCNA_02121 0.54 +2.4 2,272,714 - CCNA_02121 0.54 -0.5 2,272,714 - CCNA_02121 0.54 +1.0 2,272,731 + CCNA_02121 0.55 -3.0 2,272,754 + CCNA_02121 0.56 -0.5 2,272,783 + CCNA_02121 0.57 +0.8 2,272,823 + CCNA_02121 0.59 +0.7 2,272,823 + CCNA_02121 0.59 -0.4 2,272,823 + CCNA_02121 0.59 -1.1 2,272,823 + CCNA_02121 0.59 -0.1 2,272,823 + CCNA_02121 0.59 -1.2 2,272,823 + CCNA_02121 0.59 +2.2 2,272,831 - CCNA_02121 0.59 -2.0 2,272,831 - CCNA_02121 0.59 -0.0 2,272,906 - CCNA_02121 0.62 -0.9 2,273,015 + +0.8 2,273,018 - CCNA_02121 0.66 +0.5 2,273,023 - CCNA_02121 0.66 +0.2 2,273,101 + CCNA_02121 0.69 -0.4 2,273,117 + CCNA_02121 0.70 +0.3 2,273,160 - CCNA_02121 0.72 -1.9 2,273,178 - CCNA_02121 0.72 -0.6 2,273,190 + CCNA_02121 0.73 -2.0 2,273,190 + CCNA_02121 0.73 -0.4 2,273,190 + CCNA_02121 0.73 +1.0 2,273,190 + CCNA_02121 0.73 -1.1 2,273,252 + CCNA_02121 0.75 -1.2 2,273,260 - CCNA_02121 0.76 -1.7 2,273,260 - CCNA_02121 0.76 -2.4 2,273,277 + +1.4 2,273,311 + CCNA_02121 0.78 -1.7 2,273,320 + CCNA_02121 0.78 +0.5 2,273,333 - CCNA_02121 0.78 -1.8 2,273,337 + CCNA_02121 0.79 -0.8 2,273,345 - CCNA_02121 0.79 -2.0 2,273,373 - CCNA_02121 0.80 -0.6 2,273,425 + CCNA_02121 0.82 -2.0 2,273,434 + CCNA_02121 0.82 -0.3 2,273,479 + CCNA_02121 0.84 -1.4 2,273,488 - CCNA_02121 0.84 +1.2 2,273,496 + CCNA_02121 0.85 -1.7 2,273,561 + CCNA_02121 0.87 -0.9 2,273,615 + CCNA_02121 0.89 +0.2 2,273,618 - CCNA_02121 0.89 -1.0 2,273,623 - CCNA_02121 0.90 +0.4 2,273,623 - CCNA_02121 0.90 -0.3 2,273,637 + -1.9 2,273,759 + -0.4 2,273,759 + +0.4 2,273,762 - -1.5 2,273,765 + +0.6 2,273,780 - -1.0 2,273,974 + CCNA_02122 0.13 +0.6 2,273,974 + CCNA_02122 0.13 +0.1 2,273,995 + CCNA_02122 0.16 -1.1 2,274,061 - CCNA_02122 0.25 +2.1 2,274,089 - CCNA_02122 0.29 -1.7 2,274,183 + CCNA_02122 0.42 -0.4 2,274,207 + CCNA_02122 0.45 -1.5 2,274,219 + CCNA_02122 0.47 -0.6 2,274,229 + CCNA_02122 0.49 -1.1 2,274,237 - CCNA_02122 0.50 -0.9 2,274,237 - CCNA_02122 0.50 -1.0 2,274,269 - CCNA_02122 0.54 -1.8 2,274,270 - CCNA_02122 0.54 -0.5 2,274,280 - CCNA_02122 0.56 -1.8 2,274,367 + CCNA_02122 0.68 -0.6 2,274,367 + CCNA_02122 0.68 -0.0 2,274,375 - CCNA_02122 0.69 -0.1 2,274,380 + CCNA_02122 0.70 -0.4 2,274,453 - CCNA_02122 0.80 -1.9 2,274,532 - -0.1 2,274,556 - -0.3 2,274,576 - -0.2
Or see this region's nucleotide sequence