Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01646

Experiment: PYE with Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01644 and CCNA_01645 are separated by 114 nucleotidesCCNA_01645 and CCNA_01646 overlap by 4 nucleotidesCCNA_01646 and CCNA_01647 overlap by 4 nucleotides CCNA_01644: CCNA_01644 - chemotaxis motB protein, at 1,764,656 to 1,765,552 _01644 CCNA_01645: CCNA_01645 - 3-hydroxyisobutyrate dehydrogenase, at 1,765,667 to 1,766,527 _01645 CCNA_01646: CCNA_01646 - dethiobiotin synthetase, at 1,766,524 to 1,767,183 _01646 CCNA_01647: CCNA_01647 - 8-amino-7-oxononanoate synthase, at 1,767,180 to 1,768,334 _01647 Position (kb) 1766 1767 1768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1765.546 kb on + strandat 1765.566 kb on + strandat 1765.589 kb on + strandat 1765.597 kb on - strandat 1765.638 kb on + strandat 1765.701 kb on + strandat 1765.720 kb on + strandat 1765.720 kb on + strandat 1765.720 kb on + strandat 1765.728 kb on - strandat 1765.733 kb on + strandat 1765.761 kb on + strand, within CCNA_01645at 1765.772 kb on + strand, within CCNA_01645at 1765.819 kb on + strand, within CCNA_01645at 1766.002 kb on - strand, within CCNA_01645at 1766.015 kb on + strand, within CCNA_01645at 1766.040 kb on - strand, within CCNA_01645at 1766.119 kb on + strand, within CCNA_01645at 1766.119 kb on + strand, within CCNA_01645at 1766.119 kb on + strand, within CCNA_01645at 1766.119 kb on + strand, within CCNA_01645at 1766.119 kb on + strand, within CCNA_01645at 1766.119 kb on + strand, within CCNA_01645at 1766.119 kb on + strand, within CCNA_01645at 1766.119 kb on + strand, within CCNA_01645at 1766.127 kb on - strand, within CCNA_01645at 1766.127 kb on - strand, within CCNA_01645at 1766.127 kb on - strand, within CCNA_01645at 1766.127 kb on - strand, within CCNA_01645at 1766.201 kb on + strand, within CCNA_01645at 1766.209 kb on - strand, within CCNA_01645at 1766.209 kb on - strand, within CCNA_01645at 1766.224 kb on + strand, within CCNA_01645at 1766.245 kb on + strand, within CCNA_01645at 1766.253 kb on - strand, within CCNA_01645at 1766.288 kb on + strand, within CCNA_01645at 1766.296 kb on - strand, within CCNA_01645at 1766.311 kb on - strand, within CCNA_01645at 1766.327 kb on + strand, within CCNA_01645at 1766.375 kb on + strand, within CCNA_01645at 1766.376 kb on - strand, within CCNA_01645at 1766.387 kb on + strand, within CCNA_01645at 1766.387 kb on + strand, within CCNA_01645at 1766.387 kb on + strand, within CCNA_01645at 1766.388 kb on + strand, within CCNA_01645at 1766.395 kb on - strand, within CCNA_01645at 1766.432 kb on + strand, within CCNA_01645at 1766.440 kb on - strand, within CCNA_01645at 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.446 kb on + strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.454 kb on - strandat 1766.458 kb on + strandat 1766.464 kb on + strandat 1766.467 kb on - strandat 1766.472 kb on - strandat 1766.490 kb on + strandat 1766.490 kb on + strandat 1766.490 kb on + strandat 1766.498 kb on - strandat 1766.498 kb on - strandat 1766.504 kb on - strandat 1766.528 kb on + strandat 1766.536 kb on - strandat 1766.536 kb on - strandat 1766.536 kb on - strandat 1766.570 kb on - strandat 1766.617 kb on - strand, within CCNA_01646at 1766.619 kb on + strand, within CCNA_01646at 1766.619 kb on + strand, within CCNA_01646at 1766.626 kb on + strand, within CCNA_01646at 1766.627 kb on - strand, within CCNA_01646at 1766.652 kb on + strand, within CCNA_01646at 1766.654 kb on - strand, within CCNA_01646at 1766.675 kb on + strand, within CCNA_01646at 1766.685 kb on + strand, within CCNA_01646at 1766.685 kb on + strand, within CCNA_01646at 1766.688 kb on - strand, within CCNA_01646at 1766.704 kb on - strand, within CCNA_01646at 1766.710 kb on - strand, within CCNA_01646at 1766.719 kb on - strand, within CCNA_01646at 1766.732 kb on - strand, within CCNA_01646at 1766.744 kb on - strand, within CCNA_01646at 1766.769 kb on + strand, within CCNA_01646at 1766.769 kb on + strand, within CCNA_01646at 1766.777 kb on - strand, within CCNA_01646at 1766.780 kb on + strand, within CCNA_01646at 1766.788 kb on - strand, within CCNA_01646at 1766.795 kb on - strand, within CCNA_01646at 1766.796 kb on - strand, within CCNA_01646at 1766.850 kb on - strand, within CCNA_01646at 1766.853 kb on + strand, within CCNA_01646at 1766.896 kb on - strand, within CCNA_01646at 1766.903 kb on + strand, within CCNA_01646at 1766.905 kb on + strand, within CCNA_01646at 1766.921 kb on + strand, within CCNA_01646at 1766.936 kb on + strand, within CCNA_01646at 1767.036 kb on + strand, within CCNA_01646at 1767.036 kb on + strand, within CCNA_01646at 1767.036 kb on + strand, within CCNA_01646at 1767.044 kb on - strand, within CCNA_01646at 1767.051 kb on + strand, within CCNA_01646at 1767.072 kb on - strand, within CCNA_01646at 1767.110 kb on + strand, within CCNA_01646at 1767.118 kb on - strandat 1767.120 kb on - strandat 1767.194 kb on + strandat 1767.282 kb on + strandat 1767.290 kb on - strandat 1767.290 kb on - strandat 1767.290 kb on - strandat 1767.377 kb on - strand, within CCNA_01647at 1767.410 kb on + strand, within CCNA_01647at 1767.418 kb on - strand, within CCNA_01647at 1767.418 kb on - strand, within CCNA_01647at 1767.418 kb on - strand, within CCNA_01647at 1767.436 kb on + strand, within CCNA_01647at 1767.519 kb on + strand, within CCNA_01647at 1767.521 kb on - strand, within CCNA_01647at 1767.521 kb on - strand, within CCNA_01647at 1767.586 kb on - strand, within CCNA_01647at 1767.617 kb on - strand, within CCNA_01647at 1767.663 kb on - strand, within CCNA_01647at 1767.663 kb on - strand, within CCNA_01647at 1767.682 kb on - strand, within CCNA_01647at 1767.909 kb on - strand, within CCNA_01647at 1767.936 kb on + strand, within CCNA_01647at 1767.943 kb on - strand, within CCNA_01647at 1767.977 kb on + strand, within CCNA_01647at 1768.007 kb on + strand, within CCNA_01647at 1768.047 kb on - strand, within CCNA_01647at 1768.128 kb on + strand, within CCNA_01647at 1768.136 kb on - strand, within CCNA_01647at 1768.153 kb on + strand, within CCNA_01647at 1768.178 kb on + strand, within CCNA_01647

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chlorate 40 mM
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1,765,546 + +2.1
1,765,566 + +0.0
1,765,589 + -0.2
1,765,597 - +0.6
1,765,638 + +0.1
1,765,701 + -0.3
1,765,720 + -0.1
1,765,720 + -0.2
1,765,720 + -1.0
1,765,728 - -2.1
1,765,733 + -1.7
1,765,761 + CCNA_01645 0.11 +1.2
1,765,772 + CCNA_01645 0.12 -1.0
1,765,819 + CCNA_01645 0.18 +1.1
1,766,002 - CCNA_01645 0.39 -0.4
1,766,015 + CCNA_01645 0.40 +0.8
1,766,040 - CCNA_01645 0.43 -1.6
1,766,119 + CCNA_01645 0.52 +1.4
1,766,119 + CCNA_01645 0.52 +1.0
1,766,119 + CCNA_01645 0.52 +1.4
1,766,119 + CCNA_01645 0.52 +1.0
1,766,119 + CCNA_01645 0.52 -0.2
1,766,119 + CCNA_01645 0.52 +0.0
1,766,119 + CCNA_01645 0.52 +0.6
1,766,119 + CCNA_01645 0.52 +1.0
1,766,127 - CCNA_01645 0.53 -1.0
1,766,127 - CCNA_01645 0.53 +1.9
1,766,127 - CCNA_01645 0.53 -1.4
1,766,127 - CCNA_01645 0.53 +1.2
1,766,201 + CCNA_01645 0.62 -0.5
1,766,209 - CCNA_01645 0.63 -0.4
1,766,209 - CCNA_01645 0.63 -0.7
1,766,224 + CCNA_01645 0.65 -0.5
1,766,245 + CCNA_01645 0.67 +0.9
1,766,253 - CCNA_01645 0.68 -1.7
1,766,288 + CCNA_01645 0.72 -0.9
1,766,296 - CCNA_01645 0.73 -0.5
1,766,311 - CCNA_01645 0.75 -2.5
1,766,327 + CCNA_01645 0.77 +0.7
1,766,375 + CCNA_01645 0.82 -1.9
1,766,376 - CCNA_01645 0.82 -0.9
1,766,387 + CCNA_01645 0.84 -0.0
1,766,387 + CCNA_01645 0.84 +0.2
1,766,387 + CCNA_01645 0.84 +2.5
1,766,388 + CCNA_01645 0.84 +0.1
1,766,395 - CCNA_01645 0.85 +0.9
1,766,432 + CCNA_01645 0.89 -0.3
1,766,440 - CCNA_01645 0.90 -1.7
1,766,446 + +2.1
1,766,446 + -0.3
1,766,446 + -0.2
1,766,446 + +0.2
1,766,446 + +1.4
1,766,446 + +0.9
1,766,446 + -0.7
1,766,446 + +0.6
1,766,446 + +1.0
1,766,446 + +1.0
1,766,454 - +0.9
1,766,454 - +1.5
1,766,454 - +0.1
1,766,454 - +0.5
1,766,454 - +0.8
1,766,454 - -1.7
1,766,454 - +3.1
1,766,454 - +0.3
1,766,454 - +0.6
1,766,454 - +1.1
1,766,454 - +0.5
1,766,454 - +2.0
1,766,458 + +1.2
1,766,464 + +0.4
1,766,467 - +0.4
1,766,472 - +1.6
1,766,490 + -0.0
1,766,490 + +1.5
1,766,490 + +1.1
1,766,498 - -0.9
1,766,498 - +3.1
1,766,504 - +1.4
1,766,528 + -0.9
1,766,536 - +0.5
1,766,536 - -1.3
1,766,536 - -0.8
1,766,570 - -1.4
1,766,617 - CCNA_01646 0.14 +1.3
1,766,619 + CCNA_01646 0.14 +1.1
1,766,619 + CCNA_01646 0.14 +0.9
1,766,626 + CCNA_01646 0.15 +0.3
1,766,627 - CCNA_01646 0.16 -1.4
1,766,652 + CCNA_01646 0.19 -0.2
1,766,654 - CCNA_01646 0.20 -1.2
1,766,675 + CCNA_01646 0.23 -0.2
1,766,685 + CCNA_01646 0.24 +1.7
1,766,685 + CCNA_01646 0.24 +1.8
1,766,688 - CCNA_01646 0.25 +1.6
1,766,704 - CCNA_01646 0.27 +2.9
1,766,710 - CCNA_01646 0.28 +0.7
1,766,719 - CCNA_01646 0.30 +0.4
1,766,732 - CCNA_01646 0.32 -1.9
1,766,744 - CCNA_01646 0.33 +0.2
1,766,769 + CCNA_01646 0.37 -2.6
1,766,769 + CCNA_01646 0.37 -0.0
1,766,777 - CCNA_01646 0.38 -0.6
1,766,780 + CCNA_01646 0.39 -0.0
1,766,788 - CCNA_01646 0.40 +1.5
1,766,795 - CCNA_01646 0.41 +0.6
1,766,796 - CCNA_01646 0.41 +1.0
1,766,850 - CCNA_01646 0.49 -0.4
1,766,853 + CCNA_01646 0.50 +0.8
1,766,896 - CCNA_01646 0.56 -2.1
1,766,903 + CCNA_01646 0.57 -0.7
1,766,905 + CCNA_01646 0.58 -3.1
1,766,921 + CCNA_01646 0.60 +1.9
1,766,936 + CCNA_01646 0.62 +3.4
1,767,036 + CCNA_01646 0.78 +1.1
1,767,036 + CCNA_01646 0.78 -0.9
1,767,036 + CCNA_01646 0.78 -1.1
1,767,044 - CCNA_01646 0.79 +1.1
1,767,051 + CCNA_01646 0.80 -1.7
1,767,072 - CCNA_01646 0.83 +2.1
1,767,110 + CCNA_01646 0.89 -2.6
1,767,118 - -1.3
1,767,120 - +0.1
1,767,194 + -0.2
1,767,282 + -0.2
1,767,290 - +0.3
1,767,290 - -1.4
1,767,290 - -0.1
1,767,377 - CCNA_01647 0.17 -1.8
1,767,410 + CCNA_01647 0.20 +0.8
1,767,418 - CCNA_01647 0.21 +0.3
1,767,418 - CCNA_01647 0.21 -1.1
1,767,418 - CCNA_01647 0.21 -1.6
1,767,436 + CCNA_01647 0.22 -1.2
1,767,519 + CCNA_01647 0.29 -1.0
1,767,521 - CCNA_01647 0.30 -1.9
1,767,521 - CCNA_01647 0.30 -0.6
1,767,586 - CCNA_01647 0.35 +0.1
1,767,617 - CCNA_01647 0.38 -0.2
1,767,663 - CCNA_01647 0.42 -0.8
1,767,663 - CCNA_01647 0.42 -1.0
1,767,682 - CCNA_01647 0.43 +1.1
1,767,909 - CCNA_01647 0.63 -0.1
1,767,936 + CCNA_01647 0.65 +0.5
1,767,943 - CCNA_01647 0.66 -1.1
1,767,977 + CCNA_01647 0.69 -1.2
1,768,007 + CCNA_01647 0.72 +0.4
1,768,047 - CCNA_01647 0.75 -0.1
1,768,128 + CCNA_01647 0.82 +0.1
1,768,136 - CCNA_01647 0.83 -2.7
1,768,153 + CCNA_01647 0.84 -1.2
1,768,178 + CCNA_01647 0.86 -2.5

Or see this region's nucleotide sequence