Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01453

Experiment: PYE with Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01451 and CCNA_01452 overlap by 32 nucleotidesCCNA_01452 and CCNA_R0038 are separated by 64 nucleotidesCCNA_R0038 and CCNA_01453 are separated by 26 nucleotidesCCNA_01453 and CCNA_R0039 are separated by 28 nucleotidesCCNA_R0039 and CCNA_01457 are separated by 690 nucleotides CCNA_01451: CCNA_01451 - cold shock protein cspD, at 1,565,243 to 1,565,833 _01451 CCNA_01452: CCNA_01452 - hypothetical protein, at 1,565,802 to 1,566,356 _01452 CCNA_R0038: CCNA_R0038 - tRNA-Pro, at 1,566,421 to 1,566,497 _R0038 CCNA_01453: CCNA_01453 - electron transport complex I subunit, NADH-ubiquinone oxidoreductase, at 1,566,524 to 1,566,829 _01453 CCNA_R0039: CCNA_R0039 - tRNA-Arg, at 1,566,858 to 1,566,934 _R0039 CCNA_01457: CCNA_01457 - hypothetical protein, at 1,567,625 to 1,567,876 _01457 Position (kb) 1566 1567Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1565.533 kb on - strand, within CCNA_01451at 1565.604 kb on - strand, within CCNA_01451at 1565.610 kb on + strand, within CCNA_01451at 1565.635 kb on - strand, within CCNA_01451at 1565.662 kb on + strand, within CCNA_01451at 1565.663 kb on + strand, within CCNA_01451at 1565.663 kb on + strand, within CCNA_01451at 1565.663 kb on - strand, within CCNA_01451at 1565.664 kb on - strand, within CCNA_01451at 1565.698 kb on - strand, within CCNA_01451at 1565.698 kb on - strand, within CCNA_01451at 1565.765 kb on + strand, within CCNA_01451at 1565.765 kb on + strand, within CCNA_01451at 1565.787 kb on + strandat 1565.833 kb on + strandat 1565.845 kb on + strandat 1565.925 kb on + strand, within CCNA_01452at 1565.934 kb on + strand, within CCNA_01452at 1565.935 kb on + strand, within CCNA_01452at 1565.943 kb on - strand, within CCNA_01452at 1565.962 kb on - strand, within CCNA_01452at 1565.981 kb on + strand, within CCNA_01452at 1566.023 kb on + strand, within CCNA_01452at 1566.031 kb on - strand, within CCNA_01452at 1566.056 kb on + strand, within CCNA_01452at 1566.165 kb on + strand, within CCNA_01452at 1566.182 kb on + strand, within CCNA_01452at 1566.220 kb on + strand, within CCNA_01452at 1566.236 kb on + strand, within CCNA_01452at 1566.249 kb on + strand, within CCNA_01452at 1566.259 kb on + strand, within CCNA_01452at 1566.264 kb on + strand, within CCNA_01452at 1566.267 kb on - strand, within CCNA_01452at 1566.384 kb on + strandat 1566.509 kb on + strandat 1566.519 kb on + strandat 1566.519 kb on + strandat 1566.519 kb on + strandat 1566.519 kb on + strandat 1566.520 kb on + strandat 1566.527 kb on - strandat 1566.574 kb on + strand, within CCNA_01453at 1566.574 kb on + strand, within CCNA_01453at 1566.586 kb on + strand, within CCNA_01453at 1566.593 kb on + strand, within CCNA_01453at 1566.711 kb on + strand, within CCNA_01453at 1566.719 kb on - strand, within CCNA_01453at 1566.757 kb on - strand, within CCNA_01453at 1566.814 kb on + strandat 1566.814 kb on + strandat 1566.814 kb on + strandat 1566.814 kb on + strandat 1566.814 kb on + strandat 1566.814 kb on + strandat 1566.814 kb on + strandat 1566.814 kb on + strandat 1566.822 kb on - strandat 1566.822 kb on - strandat 1566.822 kb on - strandat 1566.822 kb on - strandat 1566.838 kb on + strandat 1567.057 kb on - strandat 1567.113 kb on - strandat 1567.173 kb on + strandat 1567.240 kb on + strandat 1567.240 kb on + strandat 1567.248 kb on - strandat 1567.289 kb on + strandat 1567.303 kb on - strandat 1567.318 kb on - strandat 1567.325 kb on - strandat 1567.325 kb on - strandat 1567.327 kb on + strandat 1567.335 kb on - strandat 1567.422 kb on - strandat 1567.422 kb on - strandat 1567.595 kb on - strandat 1567.605 kb on - strandat 1567.607 kb on + strandat 1567.607 kb on + strandat 1567.615 kb on - strandat 1567.628 kb on - strandat 1567.696 kb on + strand, within CCNA_01457at 1567.770 kb on - strand, within CCNA_01457at 1567.792 kb on + strand, within CCNA_01457

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chlorate 40 mM
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1,565,533 - CCNA_01451 0.49 -2.0
1,565,604 - CCNA_01451 0.61 +1.7
1,565,610 + CCNA_01451 0.62 +1.6
1,565,635 - CCNA_01451 0.66 -0.8
1,565,662 + CCNA_01451 0.71 +0.3
1,565,663 + CCNA_01451 0.71 +0.8
1,565,663 + CCNA_01451 0.71 +0.6
1,565,663 - CCNA_01451 0.71 -0.0
1,565,664 - CCNA_01451 0.71 -1.0
1,565,698 - CCNA_01451 0.77 +0.1
1,565,698 - CCNA_01451 0.77 +0.5
1,565,765 + CCNA_01451 0.88 +0.7
1,565,765 + CCNA_01451 0.88 +0.0
1,565,787 + +0.6
1,565,833 + +1.1
1,565,845 + +0.3
1,565,925 + CCNA_01452 0.22 -0.3
1,565,934 + CCNA_01452 0.24 +1.7
1,565,935 + CCNA_01452 0.24 +1.6
1,565,943 - CCNA_01452 0.25 -1.1
1,565,962 - CCNA_01452 0.29 -1.9
1,565,981 + CCNA_01452 0.32 +0.7
1,566,023 + CCNA_01452 0.40 +0.2
1,566,031 - CCNA_01452 0.41 -0.6
1,566,056 + CCNA_01452 0.46 -0.4
1,566,165 + CCNA_01452 0.65 -0.8
1,566,182 + CCNA_01452 0.68 +0.8
1,566,220 + CCNA_01452 0.75 +1.2
1,566,236 + CCNA_01452 0.78 +0.2
1,566,249 + CCNA_01452 0.81 +0.3
1,566,259 + CCNA_01452 0.82 -0.4
1,566,264 + CCNA_01452 0.83 +0.6
1,566,267 - CCNA_01452 0.84 +1.3
1,566,384 + -0.3
1,566,509 + +1.6
1,566,519 + -0.3
1,566,519 + -0.1
1,566,519 + +0.2
1,566,519 + +1.4
1,566,520 + +1.6
1,566,527 - -0.2
1,566,574 + CCNA_01453 0.16 +1.0
1,566,574 + CCNA_01453 0.16 +1.4
1,566,586 + CCNA_01453 0.20 +1.2
1,566,593 + CCNA_01453 0.23 +2.0
1,566,711 + CCNA_01453 0.61 +1.8
1,566,719 - CCNA_01453 0.64 -2.0
1,566,757 - CCNA_01453 0.76 -0.6
1,566,814 + +1.9
1,566,814 + +1.8
1,566,814 + +1.9
1,566,814 + +2.0
1,566,814 + +2.2
1,566,814 + +3.3
1,566,814 + +1.3
1,566,814 + +2.0
1,566,822 - -1.1
1,566,822 - +0.3
1,566,822 - +0.7
1,566,822 - +0.4
1,566,838 + +2.5
1,567,057 - -1.4
1,567,113 - +0.4
1,567,173 + -1.5
1,567,240 + -0.0
1,567,240 + +0.6
1,567,248 - -2.0
1,567,289 + -1.0
1,567,303 - -0.0
1,567,318 - -0.1
1,567,325 - -1.0
1,567,325 - -1.1
1,567,327 + +0.2
1,567,335 - -0.9
1,567,422 - -0.8
1,567,422 - -1.3
1,567,595 - -0.0
1,567,605 - +1.5
1,567,607 + -0.4
1,567,607 + +1.4
1,567,615 - -1.7
1,567,628 - -0.2
1,567,696 + CCNA_01457 0.28 -2.3
1,567,770 - CCNA_01457 0.58 -0.7
1,567,792 + CCNA_01457 0.66 -1.0

Or see this region's nucleotide sequence