Experiment: PYE with Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00734 and CCNA_00735 are separated by 61 nucleotides CCNA_00735 and CCNA_00736 are separated by 112 nucleotides CCNA_00736 and CCNA_00737 are separated by 146 nucleotides
CCNA_00734: CCNA_00734 - GumN superfamily protein, at 791,491 to 792,399
_00734
CCNA_00735: CCNA_00735 - beta-barrel assembly machine (BAM) protein BamF, at 792,461 to 793,030
_00735
CCNA_00736: CCNA_00736 - lipoprotein signal peptidase, at 793,143 to 793,649
_00736
CCNA_00737: CCNA_00737 - isoleucyl-tRNA synthetase, at 793,796 to 796,705
_00737
Position (kb) 792
793
794 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 791.481 kb on - strand at 791.490 kb on + strand at 791.490 kb on + strand at 791.500 kb on + strand at 791.500 kb on + strand at 791.508 kb on - strand at 791.510 kb on + strand at 791.515 kb on + strand at 791.520 kb on + strand at 791.608 kb on - strand, within CCNA_00734 at 791.643 kb on + strand, within CCNA_00734 at 791.643 kb on + strand, within CCNA_00734 at 791.643 kb on + strand, within CCNA_00734 at 791.723 kb on - strand, within CCNA_00734 at 791.723 kb on - strand, within CCNA_00734 at 791.723 kb on - strand, within CCNA_00734 at 791.741 kb on - strand, within CCNA_00734 at 791.748 kb on + strand, within CCNA_00734 at 791.757 kb on + strand, within CCNA_00734 at 791.765 kb on - strand, within CCNA_00734 at 791.811 kb on + strand, within CCNA_00734 at 791.848 kb on + strand, within CCNA_00734 at 791.856 kb on - strand, within CCNA_00734 at 791.923 kb on + strand, within CCNA_00734 at 791.923 kb on + strand, within CCNA_00734 at 791.923 kb on + strand, within CCNA_00734 at 791.923 kb on + strand, within CCNA_00734 at 791.923 kb on + strand, within CCNA_00734 at 791.923 kb on + strand, within CCNA_00734 at 791.931 kb on - strand, within CCNA_00734 at 791.931 kb on - strand, within CCNA_00734 at 791.940 kb on + strand, within CCNA_00734 at 791.993 kb on + strand, within CCNA_00734 at 791.995 kb on + strand, within CCNA_00734 at 792.003 kb on - strand, within CCNA_00734 at 792.003 kb on - strand, within CCNA_00734 at 792.072 kb on - strand, within CCNA_00734 at 792.104 kb on + strand, within CCNA_00734 at 792.112 kb on - strand, within CCNA_00734 at 792.148 kb on + strand, within CCNA_00734 at 792.187 kb on - strand, within CCNA_00734 at 792.246 kb on + strand, within CCNA_00734 at 792.246 kb on + strand, within CCNA_00734 at 792.260 kb on - strand, within CCNA_00734 at 792.273 kb on - strand, within CCNA_00734 at 792.301 kb on + strand, within CCNA_00734 at 792.302 kb on + strand, within CCNA_00734 at 792.305 kb on - strand, within CCNA_00734 at 792.376 kb on + strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.418 kb on - strand at 792.425 kb on + strand at 792.425 kb on + strand at 792.433 kb on - strand at 792.433 kb on - strand at 792.433 kb on - strand at 792.433 kb on - strand at 792.508 kb on - strand at 792.555 kb on - strand, within CCNA_00735 at 792.620 kb on - strand, within CCNA_00735 at 793.036 kb on - strand at 793.047 kb on + strand at 793.105 kb on + strand at 793.113 kb on - strand at 793.113 kb on - strand at 793.638 kb on - strand at 793.656 kb on - strand at 793.705 kb on + strand at 793.710 kb on + strand at 793.710 kb on + strand at 793.713 kb on - strand at 793.713 kb on - strand at 793.730 kb on - strand at 793.735 kb on + strand at 793.735 kb on + strand at 793.749 kb on - strand at 793.786 kb on + strand at 793.805 kb on + strand at 793.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chlorate 40 mM remove 791,481 - -1.2 791,490 + +1.1 791,490 + +1.6 791,500 + +0.3 791,500 + -0.7 791,508 - -0.2 791,510 + +1.5 791,515 + +0.5 791,520 + +0.4 791,608 - CCNA_00734 0.13 -0.6 791,643 + CCNA_00734 0.17 -0.6 791,643 + CCNA_00734 0.17 +1.5 791,643 + CCNA_00734 0.17 +0.8 791,723 - CCNA_00734 0.26 -1.2 791,723 - CCNA_00734 0.26 +0.3 791,723 - CCNA_00734 0.26 -2.0 791,741 - CCNA_00734 0.28 +1.6 791,748 + CCNA_00734 0.28 -1.0 791,757 + CCNA_00734 0.29 +1.1 791,765 - CCNA_00734 0.30 -1.0 791,811 + CCNA_00734 0.35 +1.3 791,848 + CCNA_00734 0.39 +0.9 791,856 - CCNA_00734 0.40 +0.7 791,923 + CCNA_00734 0.48 +0.7 791,923 + CCNA_00734 0.48 +0.5 791,923 + CCNA_00734 0.48 +1.6 791,923 + CCNA_00734 0.48 +1.0 791,923 + CCNA_00734 0.48 +0.9 791,923 + CCNA_00734 0.48 +1.0 791,931 - CCNA_00734 0.48 +1.2 791,931 - CCNA_00734 0.48 -1.9 791,940 + CCNA_00734 0.49 -0.6 791,993 + CCNA_00734 0.55 +0.6 791,995 + CCNA_00734 0.55 +1.0 792,003 - CCNA_00734 0.56 -2.6 792,003 - CCNA_00734 0.56 -1.6 792,072 - CCNA_00734 0.64 +1.0 792,104 + CCNA_00734 0.67 +1.2 792,112 - CCNA_00734 0.68 +0.8 792,148 + CCNA_00734 0.72 +0.6 792,187 - CCNA_00734 0.77 -1.2 792,246 + CCNA_00734 0.83 +1.1 792,246 + CCNA_00734 0.83 -0.2 792,260 - CCNA_00734 0.85 -0.2 792,273 - CCNA_00734 0.86 +0.6 792,301 + CCNA_00734 0.89 -0.1 792,302 + CCNA_00734 0.89 +0.4 792,305 - CCNA_00734 0.90 +1.0 792,376 + +0.2 792,410 + +1.7 792,410 + +1.5 792,418 - +0.7 792,425 + +2.1 792,425 + +0.1 792,433 - +1.7 792,433 - +1.8 792,433 - +2.4 792,433 - +1.8 792,508 - +3.0 792,555 - CCNA_00735 0.16 +1.2 792,620 - CCNA_00735 0.28 +1.1 793,036 - +0.9 793,047 + -1.9 793,105 + -0.9 793,113 - +1.5 793,113 - +1.1 793,638 - +0.7 793,656 - +1.2 793,705 + +0.5 793,710 + -0.5 793,710 + +1.2 793,713 - +2.3 793,713 - +0.9 793,730 - +1.5 793,735 + -0.9 793,735 + +0.8 793,749 - +1.6 793,786 + -0.1 793,805 + -1.5 793,810 + -1.4
Or see this region's nucleotide sequence