Experiment: PYE with Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00257 and CCNA_00259 are separated by 342 nucleotides CCNA_00259 and CCNA_00260 are separated by 251 nucleotides
CCNA_00257: CCNA_00257 - adenosylhomocysteinase, at 270,176 to 271,567
_00257
CCNA_00259: CCNA_00259 - hypothetical protein, at 271,910 to 272,620
_00259
CCNA_00260: CCNA_00260 - glutathione S-transferase, at 272,872 to 273,558
_00260
Position (kb) 271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 270.911 kb on - strand, within CCNA_00257 at 270.940 kb on - strand, within CCNA_00257 at 270.955 kb on - strand, within CCNA_00257 at 270.996 kb on - strand, within CCNA_00257 at 271.123 kb on - strand, within CCNA_00257 at 271.168 kb on - strand, within CCNA_00257 at 271.248 kb on - strand, within CCNA_00257 at 271.322 kb on - strand, within CCNA_00257 at 271.355 kb on - strand at 271.410 kb on - strand, within CCNA_00257 at 271.415 kb on - strand, within CCNA_00257 at 271.458 kb on - strand at 271.602 kb on + strand at 271.612 kb on + strand at 271.761 kb on + strand at 271.766 kb on + strand at 271.766 kb on + strand at 271.769 kb on - strand at 271.769 kb on - strand at 271.776 kb on + strand at 271.776 kb on + strand at 271.809 kb on + strand at 271.817 kb on - strand at 271.834 kb on + strand at 271.839 kb on + strand at 271.839 kb on + strand at 271.839 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.847 kb on - strand at 271.847 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.862 kb on - strand at 271.869 kb on - strand at 271.870 kb on + strand at 271.870 kb on + strand at 271.877 kb on - strand at 271.877 kb on - strand at 271.878 kb on - strand at 271.910 kb on - strand at 271.918 kb on + strand at 271.918 kb on - strand at 271.926 kb on - strand at 271.927 kb on - strand at 271.970 kb on - strand at 271.978 kb on - strand at 271.978 kb on - strand at 272.004 kb on - strand, within CCNA_00259 at 272.009 kb on - strand, within CCNA_00259 at 272.044 kb on + strand, within CCNA_00259 at 272.044 kb on + strand, within CCNA_00259 at 272.049 kb on + strand, within CCNA_00259 at 272.057 kb on - strand, within CCNA_00259 at 272.057 kb on - strand at 272.098 kb on - strand, within CCNA_00259 at 272.110 kb on + strand, within CCNA_00259 at 272.110 kb on + strand, within CCNA_00259 at 272.117 kb on + strand, within CCNA_00259 at 272.117 kb on + strand, within CCNA_00259 at 272.117 kb on + strand, within CCNA_00259 at 272.125 kb on - strand, within CCNA_00259 at 272.125 kb on - strand, within CCNA_00259 at 272.125 kb on - strand, within CCNA_00259 at 272.125 kb on - strand, within CCNA_00259 at 272.129 kb on + strand, within CCNA_00259 at 272.135 kb on + strand, within CCNA_00259 at 272.137 kb on - strand, within CCNA_00259 at 272.183 kb on + strand, within CCNA_00259 at 272.188 kb on + strand, within CCNA_00259 at 272.188 kb on + strand, within CCNA_00259 at 272.188 kb on + strand, within CCNA_00259 at 272.191 kb on - strand, within CCNA_00259 at 272.191 kb on - strand, within CCNA_00259 at 272.191 kb on - strand, within CCNA_00259 at 272.207 kb on + strand, within CCNA_00259 at 272.215 kb on - strand, within CCNA_00259 at 272.255 kb on + strand, within CCNA_00259 at 272.255 kb on + strand, within CCNA_00259 at 272.268 kb on - strand, within CCNA_00259 at 272.272 kb on - strand, within CCNA_00259 at 272.296 kb on - strand, within CCNA_00259 at 272.300 kb on - strand, within CCNA_00259 at 272.357 kb on + strand, within CCNA_00259 at 272.409 kb on + strand, within CCNA_00259 at 272.448 kb on - strand, within CCNA_00259 at 272.459 kb on - strand, within CCNA_00259 at 272.492 kb on + strand, within CCNA_00259 at 272.492 kb on + strand, within CCNA_00259 at 272.511 kb on + strand, within CCNA_00259 at 272.522 kb on + strand, within CCNA_00259 at 272.522 kb on + strand, within CCNA_00259 at 272.530 kb on - strand, within CCNA_00259 at 272.530 kb on - strand, within CCNA_00259 at 272.530 kb on - strand, within CCNA_00259 at 272.530 kb on - strand at 272.534 kb on + strand, within CCNA_00259 at 272.534 kb on + strand, within CCNA_00259 at 272.535 kb on + strand, within CCNA_00259 at 272.538 kb on - strand, within CCNA_00259 at 272.542 kb on - strand, within CCNA_00259 at 272.542 kb on - strand, within CCNA_00259 at 272.543 kb on + strand, within CCNA_00259 at 272.543 kb on + strand, within CCNA_00259 at 272.543 kb on + strand, within CCNA_00259 at 272.554 kb on - strand at 272.600 kb on - strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.602 kb on + strand at 272.605 kb on - strand at 272.607 kb on + strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.610 kb on - strand at 272.623 kb on - strand at 272.628 kb on + strand at 272.640 kb on - strand at 272.642 kb on + strand at 272.642 kb on + strand at 272.642 kb on + strand at 272.642 kb on + strand at 272.642 kb on + strand at 272.642 kb on + strand at 272.650 kb on - strand at 272.650 kb on - strand at 272.650 kb on - strand at 272.657 kb on + strand at 272.665 kb on + strand at 272.673 kb on - strand at 272.682 kb on + strand at 272.749 kb on - strand at 272.758 kb on + strand at 272.758 kb on + strand at 272.758 kb on + strand at 272.764 kb on + strand at 272.764 kb on + strand at 272.766 kb on - strand at 272.766 kb on - strand at 272.767 kb on - strand at 272.772 kb on - strand at 272.800 kb on + strand at 272.812 kb on - strand at 272.813 kb on - strand at 272.855 kb on - strand at 272.870 kb on - strand at 272.876 kb on - strand at 272.932 kb on - strand at 272.932 kb on - strand at 272.990 kb on + strand, within CCNA_00260 at 272.993 kb on + strand, within CCNA_00260 at 272.993 kb on + strand, within CCNA_00260 at 273.018 kb on - strand, within CCNA_00260 at 273.025 kb on + strand, within CCNA_00260 at 273.035 kb on - strand, within CCNA_00260 at 273.046 kb on - strand, within CCNA_00260 at 273.058 kb on - strand, within CCNA_00260 at 273.094 kb on + strand, within CCNA_00260 at 273.136 kb on - strand, within CCNA_00260 at 273.161 kb on + strand, within CCNA_00260 at 273.161 kb on + strand, within CCNA_00260 at 273.169 kb on - strand, within CCNA_00260 at 273.169 kb on - strand, within CCNA_00260 at 273.169 kb on - strand, within CCNA_00260 at 273.169 kb on - strand, within CCNA_00260 at 273.173 kb on + strand, within CCNA_00260 at 273.180 kb on + strand, within CCNA_00260 at 273.196 kb on + strand, within CCNA_00260 at 273.196 kb on + strand, within CCNA_00260 at 273.196 kb on + strand, within CCNA_00260 at 273.199 kb on - strand, within CCNA_00260 at 273.204 kb on - strand, within CCNA_00260 at 273.204 kb on - strand, within CCNA_00260 at 273.209 kb on - strand, within CCNA_00260 at 273.217 kb on - strand, within CCNA_00260 at 273.221 kb on + strand, within CCNA_00260 at 273.221 kb on + strand, within CCNA_00260 at 273.221 kb on + strand, within CCNA_00260 at 273.222 kb on + strand, within CCNA_00260 at 273.229 kb on - strand, within CCNA_00260 at 273.246 kb on - strand, within CCNA_00260 at 273.257 kb on - strand, within CCNA_00260 at 273.278 kb on - strand, within CCNA_00260 at 273.291 kb on - strand, within CCNA_00260 at 273.293 kb on - strand, within CCNA_00260 at 273.348 kb on - strand, within CCNA_00260 at 273.348 kb on - strand, within CCNA_00260 at 273.348 kb on - strand, within CCNA_00260 at 273.366 kb on + strand, within CCNA_00260 at 273.380 kb on + strand, within CCNA_00260 at 273.380 kb on + strand, within CCNA_00260 at 273.398 kb on - strand, within CCNA_00260 at 273.419 kb on + strand, within CCNA_00260 at 273.425 kb on + strand, within CCNA_00260 at 273.425 kb on + strand, within CCNA_00260 at 273.425 kb on + strand, within CCNA_00260 at 273.425 kb on + strand, within CCNA_00260 at 273.425 kb on + strand, within CCNA_00260 at 273.425 kb on + strand, within CCNA_00260 at 273.425 kb on + strand, within CCNA_00260 at 273.433 kb on - strand, within CCNA_00260 at 273.433 kb on - strand, within CCNA_00260 at 273.433 kb on - strand, within CCNA_00260 at 273.433 kb on - strand, within CCNA_00260 at 273.433 kb on - strand, within CCNA_00260 at 273.433 kb on - strand, within CCNA_00260 at 273.433 kb on - strand, within CCNA_00260 at 273.433 kb on - strand, within CCNA_00260 at 273.435 kb on + strand, within CCNA_00260 at 273.463 kb on - strand, within CCNA_00260 at 273.481 kb on - strand, within CCNA_00260 at 273.487 kb on + strand, within CCNA_00260 at 273.493 kb on + strand at 273.495 kb on - strand at 273.533 kb on + strand at 273.541 kb on - strand at 273.546 kb on - strand at 273.593 kb on + strand at 273.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chlorate 40 mM remove 270,911 - CCNA_00257 0.53 +1.2 270,940 - CCNA_00257 0.55 +1.2 270,955 - CCNA_00257 0.56 +1.4 270,996 - CCNA_00257 0.59 -2.1 271,123 - CCNA_00257 0.68 +0.8 271,168 - CCNA_00257 0.71 -2.4 271,248 - CCNA_00257 0.77 -0.0 271,322 - CCNA_00257 0.82 +1.0 271,355 - +0.7 271,410 - CCNA_00257 0.89 -0.4 271,415 - CCNA_00257 0.89 -0.6 271,458 - +1.4 271,602 + +1.5 271,612 + -2.8 271,761 + +0.3 271,766 + -1.3 271,766 + -2.8 271,769 - +0.8 271,769 - -0.5 271,776 + -3.3 271,776 + -2.7 271,809 + -2.9 271,817 - +0.2 271,834 + -1.6 271,839 + -3.0 271,839 + -1.0 271,839 + -1.3 271,844 + -0.6 271,844 + +2.2 271,844 + -1.7 271,844 + -0.8 271,844 + -0.7 271,844 + -1.7 271,844 + -1.1 271,844 + -0.9 271,844 + -0.1 271,847 - -0.6 271,847 - +0.7 271,852 - -0.3 271,852 - -1.6 271,852 - +1.6 271,852 - -0.4 271,852 - -0.8 271,852 - -1.0 271,852 - +0.4 271,852 - -1.9 271,852 - +0.0 271,852 - -0.1 271,852 - +0.3 271,852 - -1.1 271,852 - -1.5 271,852 - -0.1 271,862 - +1.9 271,869 - -0.1 271,870 + +0.4 271,870 + +0.8 271,877 - -1.5 271,877 - -0.9 271,878 - +0.2 271,910 - +0.9 271,918 + +0.5 271,918 - +0.6 271,926 - -0.2 271,927 - +0.2 271,970 - +0.8 271,978 - -0.8 271,978 - -1.5 272,004 - CCNA_00259 0.13 -1.2 272,009 - CCNA_00259 0.14 +1.4 272,044 + CCNA_00259 0.19 -0.0 272,044 + CCNA_00259 0.19 -0.7 272,049 + CCNA_00259 0.20 -1.7 272,057 - CCNA_00259 0.21 -1.9 272,057 - +2.6 272,098 - CCNA_00259 0.26 -1.1 272,110 + CCNA_00259 0.28 +1.0 272,110 + CCNA_00259 0.28 -2.3 272,117 + CCNA_00259 0.29 +0.2 272,117 + CCNA_00259 0.29 +0.0 272,117 + CCNA_00259 0.29 -0.4 272,125 - CCNA_00259 0.30 +0.0 272,125 - CCNA_00259 0.30 -0.5 272,125 - CCNA_00259 0.30 +1.5 272,125 - CCNA_00259 0.30 -0.1 272,129 + CCNA_00259 0.31 -1.4 272,135 + CCNA_00259 0.32 -2.9 272,137 - CCNA_00259 0.32 -1.8 272,183 + CCNA_00259 0.38 -0.7 272,188 + CCNA_00259 0.39 -1.1 272,188 + CCNA_00259 0.39 -1.9 272,188 + CCNA_00259 0.39 -0.3 272,191 - CCNA_00259 0.40 -1.8 272,191 - CCNA_00259 0.40 +0.1 272,191 - CCNA_00259 0.40 -2.2 272,207 + CCNA_00259 0.42 -0.4 272,215 - CCNA_00259 0.43 -2.1 272,255 + CCNA_00259 0.49 +0.2 272,255 + CCNA_00259 0.49 +0.0 272,268 - CCNA_00259 0.50 -1.0 272,272 - CCNA_00259 0.51 -1.8 272,296 - CCNA_00259 0.54 -1.3 272,300 - CCNA_00259 0.55 -2.3 272,357 + CCNA_00259 0.63 -1.4 272,409 + CCNA_00259 0.70 -0.6 272,448 - CCNA_00259 0.76 +1.2 272,459 - CCNA_00259 0.77 +1.4 272,492 + CCNA_00259 0.82 +0.2 272,492 + CCNA_00259 0.82 -2.3 272,511 + CCNA_00259 0.85 +0.0 272,522 + CCNA_00259 0.86 -0.1 272,522 + CCNA_00259 0.86 -1.1 272,530 - CCNA_00259 0.87 +0.2 272,530 - CCNA_00259 0.87 +0.0 272,530 - CCNA_00259 0.87 -1.1 272,530 - +1.4 272,534 + CCNA_00259 0.88 -0.8 272,534 + CCNA_00259 0.88 -1.5 272,535 + CCNA_00259 0.88 -0.1 272,538 - CCNA_00259 0.88 -0.1 272,542 - CCNA_00259 0.89 -0.3 272,542 - CCNA_00259 0.89 -0.2 272,543 + CCNA_00259 0.89 -2.1 272,543 + CCNA_00259 0.89 -1.5 272,543 + CCNA_00259 0.89 -0.4 272,554 - +1.0 272,600 - -0.3 272,602 + -1.8 272,602 + +0.6 272,602 + +0.4 272,602 + +0.4 272,602 + -3.1 272,602 + +0.6 272,602 + +0.5 272,602 + -2.4 272,602 + +0.1 272,602 + +0.3 272,602 + -0.9 272,602 + -0.3 272,602 + +1.1 272,602 + -0.4 272,602 + -1.6 272,605 - -0.1 272,607 + -0.1 272,610 - +0.2 272,610 - -2.8 272,610 - -1.0 272,610 - -0.9 272,610 - -0.1 272,610 - -0.4 272,610 - +0.4 272,610 - +0.9 272,610 - -0.1 272,610 - +1.7 272,610 - -0.6 272,610 - -2.5 272,610 - -0.3 272,623 - -2.8 272,628 + -0.8 272,640 - +0.5 272,642 + -0.3 272,642 + -0.8 272,642 + -0.6 272,642 + -0.4 272,642 + -1.4 272,642 + -0.1 272,650 - +1.2 272,650 - -1.3 272,650 - +0.9 272,657 + +0.9 272,665 + +0.9 272,673 - -1.8 272,682 + -0.1 272,749 - +0.4 272,758 + -0.8 272,758 + -1.7 272,758 + -0.9 272,764 + +0.2 272,764 + -1.5 272,766 - -0.1 272,766 - -1.1 272,767 - -1.6 272,772 - -1.1 272,800 + -0.0 272,812 - +0.7 272,813 - -0.5 272,855 - +0.6 272,870 - +2.0 272,876 - -0.9 272,932 - +1.1 272,932 - -0.6 272,990 + CCNA_00260 0.17 -1.4 272,993 + CCNA_00260 0.18 -1.9 272,993 + CCNA_00260 0.18 -0.8 273,018 - CCNA_00260 0.21 +1.1 273,025 + CCNA_00260 0.22 -0.9 273,035 - CCNA_00260 0.24 +1.2 273,046 - CCNA_00260 0.25 +0.3 273,058 - CCNA_00260 0.27 +0.2 273,094 + CCNA_00260 0.32 -0.6 273,136 - CCNA_00260 0.38 -0.7 273,161 + CCNA_00260 0.42 -0.5 273,161 + CCNA_00260 0.42 +0.1 273,169 - CCNA_00260 0.43 +0.8 273,169 - CCNA_00260 0.43 -1.5 273,169 - CCNA_00260 0.43 -1.1 273,169 - CCNA_00260 0.43 +0.1 273,173 + CCNA_00260 0.44 +0.7 273,180 + CCNA_00260 0.45 -1.8 273,196 + CCNA_00260 0.47 -0.6 273,196 + CCNA_00260 0.47 +1.3 273,196 + CCNA_00260 0.47 -1.5 273,199 - CCNA_00260 0.48 -0.8 273,204 - CCNA_00260 0.48 +1.0 273,204 - CCNA_00260 0.48 -0.8 273,209 - CCNA_00260 0.49 -0.8 273,217 - CCNA_00260 0.50 +0.0 273,221 + CCNA_00260 0.51 -2.5 273,221 + CCNA_00260 0.51 -0.1 273,221 + CCNA_00260 0.51 -0.6 273,222 + CCNA_00260 0.51 -1.5 273,229 - CCNA_00260 0.52 +0.2 273,246 - CCNA_00260 0.54 -1.0 273,257 - CCNA_00260 0.56 +0.8 273,278 - CCNA_00260 0.59 +0.8 273,291 - CCNA_00260 0.61 -0.5 273,293 - CCNA_00260 0.61 -0.2 273,348 - CCNA_00260 0.69 +0.0 273,348 - CCNA_00260 0.69 -0.0 273,348 - CCNA_00260 0.69 +0.7 273,366 + CCNA_00260 0.72 -1.7 273,380 + CCNA_00260 0.74 -1.7 273,380 + CCNA_00260 0.74 -1.1 273,398 - CCNA_00260 0.77 -2.6 273,419 + CCNA_00260 0.80 +1.3 273,425 + CCNA_00260 0.80 -0.6 273,425 + CCNA_00260 0.80 -0.3 273,425 + CCNA_00260 0.80 -1.6 273,425 + CCNA_00260 0.80 -0.6 273,425 + CCNA_00260 0.80 +0.7 273,425 + CCNA_00260 0.80 -0.3 273,425 + CCNA_00260 0.80 +0.8 273,433 - CCNA_00260 0.82 +0.1 273,433 - CCNA_00260 0.82 -0.9 273,433 - CCNA_00260 0.82 +0.3 273,433 - CCNA_00260 0.82 +0.7 273,433 - CCNA_00260 0.82 -0.9 273,433 - CCNA_00260 0.82 -2.4 273,433 - CCNA_00260 0.82 -0.5 273,433 - CCNA_00260 0.82 -0.5 273,435 + CCNA_00260 0.82 +1.1 273,463 - CCNA_00260 0.86 +0.4 273,481 - CCNA_00260 0.89 -1.5 273,487 + CCNA_00260 0.90 +0.8 273,493 + -1.1 273,495 - -2.1 273,533 + -0.6 273,541 - -0.2 273,546 - -1.8 273,593 + -1.8 273,605 + -0.4
Or see this region's nucleotide sequence