Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16745

Experiment: Recovery broth with Ticarcillin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 2e-04 mM
1,528,229	-		BBR_RS16735	0.83	+0.5
1,528,245	-		BBR_RS16735	0.85	+0.2
1,528,294	-				-1.0
1,528,294	-				+0.7
1,528,300	+				-1.4
1,528,314	+				+0.4
1,528,314	-				+1.9
1,528,325	-				+0.2
1,528,331	+				+1.4
1,528,331	+				+1.4
1,528,339	-				+0.1
1,528,339	-				-0.1
1,528,339	-				+0.4
1,528,339	-				-0.2
1,528,339	-				-0.1
1,528,389	+				+1.2
1,528,565	-				+0.4
1,528,604	-		BBR_RS16740	0.15	+0.1
1,528,604	-		BBR_RS16740	0.15	-0.4
1,528,671	-		BBR_RS16740	0.25	+0.2
1,528,687	+		BBR_RS16740	0.27	+0.2
1,528,752	+		BBR_RS16740	0.37	+0.8
1,528,753	-		BBR_RS16740	0.37	-0.1
1,528,788	+		BBR_RS16740	0.42	-0.3
1,528,801	+		BBR_RS16740	0.44	+0.1
1,528,804	-		BBR_RS16740	0.45	+0.8
1,528,820	+		BBR_RS16740	0.47	+0.6
1,528,869	+		BBR_RS16740	0.54	-0.1
1,528,899	-		BBR_RS16740	0.59	-0.6
1,528,901	+		BBR_RS16740	0.59	-0.2
1,528,909	-		BBR_RS16740	0.60	-0.4
1,528,909	-		BBR_RS16740	0.60	+0.2
1,528,937	-		BBR_RS16740	0.64	+0.1
1,528,937	-		BBR_RS16740	0.64	-0.2
1,528,937	-		BBR_RS16740	0.64	-1.6
1,528,947	-		BBR_RS16740	0.66	-0.0
1,528,990	+		BBR_RS16740	0.72	-0.2
1,528,995	-		BBR_RS16740	0.73	-0.1
1,528,995	-		BBR_RS16740	0.73	+0.4
1,529,003	-		BBR_RS16740	0.74	+0.0
1,529,007	+		BBR_RS16740	0.75	-1.0
1,529,007	+		BBR_RS16740	0.75	-1.2
1,529,013	+		BBR_RS16740	0.76	+0.5
1,529,016	-		BBR_RS16740	0.76	-0.4
1,529,023	+		BBR_RS16740	0.77	+0.4
1,529,023	-		BBR_RS16740	0.77	-0.1
1,529,023	-		BBR_RS16740	0.77	+1.2
1,529,050	-		BBR_RS16740	0.81	+0.2
1,529,050	-		BBR_RS16740	0.81	+1.8
1,529,095	+		BBR_RS16740	0.88	+0.3
1,529,108	-		BBR_RS16740	0.90	-0.8
1,529,129	+				-1.0
1,529,129	+				+0.5
1,529,139	-				-0.7
1,529,326	+		BBR_RS16745	0.16	-0.9
1,529,326	+		BBR_RS16745	0.16	-0.8
1,529,334	-		BBR_RS16745	0.17	+0.5
1,529,334	-		BBR_RS16745	0.17	+0.2
1,529,334	-		BBR_RS16745	0.17	+1.1
1,529,378	+		BBR_RS16745	0.22	-0.8
1,529,386	-		BBR_RS16745	0.23	-0.9
1,529,433	-		BBR_RS16745	0.29	+0.0
1,529,556	-		BBR_RS16745	0.43	-0.7
1,529,574	-		BBR_RS16745	0.45	-1.3
1,529,594	+		BBR_RS16745	0.47	+0.8
1,529,597	-		BBR_RS16745	0.48	-1.0
1,529,679	+		BBR_RS16745	0.57	-0.2
1,529,708	-		BBR_RS16745	0.61	-0.2
1,529,731	-		BBR_RS16745	0.63	-0.9
1,529,831	-		BBR_RS16745	0.75	-1.3
1,529,954	+		BBR_RS16745	0.90	-0.8
1,529,954	+		BBR_RS16745	0.90	-1.2
1,529,954	+		BBR_RS16745	0.90	-0.6
1,529,962	-				-0.0
1,529,962	-				-0.8
1,529,962	-				+0.2
1,529,991	+				-0.4
1,530,010	+				-0.7
1,530,300	+		BBR_RS16750	0.31	+0.1
1,530,322	+		BBR_RS16750	0.33	+0.8
1,530,339	-		BBR_RS16750	0.35	-1.3
1,530,339	-		BBR_RS16750	0.35	-0.6
1,530,355	+		BBR_RS16750	0.37	-0.2
1,530,374	+		BBR_RS16750	0.40	+0.8
1,530,382	-		BBR_RS16750	0.41	+0.1
1,530,478	-		BBR_RS16750	0.52	+2.4
1,530,478	-		BBR_RS16750	0.52	+0.4
1,530,506	-		BBR_RS16750	0.55	-1.4
1,530,676	-		BBR_RS16750	0.76	-0.6
1,530,745	+		BBR_RS16750	0.84	+0.4
1,530,767	+		BBR_RS16750	0.86	-0.2
1,530,783	+		BBR_RS16750	0.88	-0.8
1,530,853	-				+2.4
1,530,989	+				-0.3
1,530,989	+				+0.3
1,531,026	+				-0.2
1,531,034	-				+0.0
1,531,039	-				-0.0