Experiment: Nalidixic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01940 and ABZR86_RS01945 are separated by 22 nucleotides ABZR86_RS01945 and ABZR86_RS01950 are separated by 13 nucleotides ABZR86_RS01950 and ABZR86_RS01955 are separated by 165 nucleotides
ABZR86_RS01940: ABZR86_RS01940 - triose-phosphate isomerase, at 421,108 to 421,857
_RS01940
ABZR86_RS01945: ABZR86_RS01945 - preprotein translocase subunit SecG, at 421,880 to 422,335
_RS01945
ABZR86_RS01950: ABZR86_RS01950 - tRNA-Leu, at 422,349 to 422,433
_RS01950
ABZR86_RS01955: ABZR86_RS01955 - integrase arm-type DNA-binding domain-containing protein, at 422,599 to 423,900
_RS01955
Position (kb) 422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 422.096 kb on + strand, within ABZR86_RS01945 at 422.096 kb on + strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.486 kb on + strand at 422.599 kb on - strand at 422.609 kb on + strand at 422.609 kb on + strand at 422.610 kb on - strand at 422.622 kb on + strand at 422.623 kb on - strand at 422.665 kb on + strand at 422.665 kb on + strand at 422.665 kb on + strand at 422.697 kb on - strand at 422.697 kb on - strand at 422.718 kb on + strand at 422.719 kb on - strand at 422.719 kb on - strand at 422.831 kb on + strand, within ABZR86_RS01955 at 422.831 kb on + strand, within ABZR86_RS01955 at 422.832 kb on - strand, within ABZR86_RS01955 at 422.832 kb on - strand, within ABZR86_RS01955 at 422.859 kb on + strand, within ABZR86_RS01955 at 422.859 kb on + strand, within ABZR86_RS01955 at 422.859 kb on + strand, within ABZR86_RS01955 at 422.860 kb on - strand, within ABZR86_RS01955 at 422.860 kb on - strand, within ABZR86_RS01955 at 422.860 kb on - strand, within ABZR86_RS01955 at 422.860 kb on - strand, within ABZR86_RS01955 at 423.020 kb on - strand, within ABZR86_RS01955 at 423.020 kb on - strand, within ABZR86_RS01955 at 423.020 kb on - strand, within ABZR86_RS01955 at 423.049 kb on + strand, within ABZR86_RS01955 at 423.049 kb on + strand, within ABZR86_RS01955 at 423.049 kb on + strand, within ABZR86_RS01955 at 423.049 kb on + strand, within ABZR86_RS01955 at 423.050 kb on - strand, within ABZR86_RS01955 at 423.050 kb on - strand, within ABZR86_RS01955 at 423.050 kb on - strand, within ABZR86_RS01955 at 423.050 kb on - strand, within ABZR86_RS01955 at 423.050 kb on - strand, within ABZR86_RS01955 at 423.050 kb on - strand, within ABZR86_RS01955 at 423.050 kb on - strand, within ABZR86_RS01955 at 423.053 kb on + strand, within ABZR86_RS01955 at 423.053 kb on + strand, within ABZR86_RS01955 at 423.053 kb on + strand, within ABZR86_RS01955 at 423.054 kb on - strand, within ABZR86_RS01955 at 423.054 kb on - strand, within ABZR86_RS01955 at 423.054 kb on - strand, within ABZR86_RS01955 at 423.054 kb on - strand, within ABZR86_RS01955 at 423.166 kb on + strand, within ABZR86_RS01955 at 423.166 kb on + strand, within ABZR86_RS01955 at 423.166 kb on + strand, within ABZR86_RS01955 at 423.166 kb on + strand, within ABZR86_RS01955 at 423.166 kb on + strand, within ABZR86_RS01955 at 423.167 kb on - strand, within ABZR86_RS01955 at 423.167 kb on - strand, within ABZR86_RS01955 at 423.167 kb on - strand, within ABZR86_RS01955 at 423.167 kb on - strand, within ABZR86_RS01955 at 423.167 kb on - strand, within ABZR86_RS01955 at 423.210 kb on + strand, within ABZR86_RS01955 at 423.210 kb on + strand, within ABZR86_RS01955 at 423.210 kb on + strand, within ABZR86_RS01955 at 423.211 kb on - strand, within ABZR86_RS01955 at 423.267 kb on + strand, within ABZR86_RS01955 at 423.268 kb on - strand, within ABZR86_RS01955 at 423.268 kb on - strand, within ABZR86_RS01955 at 423.322 kb on + strand, within ABZR86_RS01955 at 423.322 kb on + strand, within ABZR86_RS01955 at 423.322 kb on + strand, within ABZR86_RS01955 at 423.322 kb on + strand, within ABZR86_RS01955 at 423.322 kb on + strand, within ABZR86_RS01955 at 423.323 kb on - strand, within ABZR86_RS01955 at 423.323 kb on - strand, within ABZR86_RS01955 at 423.323 kb on - strand, within ABZR86_RS01955 at 423.323 kb on - strand, within ABZR86_RS01955 at 423.345 kb on - strand, within ABZR86_RS01955 at 423.419 kb on + strand, within ABZR86_RS01955 at 423.419 kb on + strand, within ABZR86_RS01955 at 423.419 kb on + strand, within ABZR86_RS01955 at 423.419 kb on + strand, within ABZR86_RS01955 at 423.419 kb on + strand, within ABZR86_RS01955 at 423.419 kb on + strand, within ABZR86_RS01955 at 423.420 kb on - strand, within ABZR86_RS01955 at 423.420 kb on - strand, within ABZR86_RS01955 at 423.420 kb on - strand, within ABZR86_RS01955 at 423.420 kb on - strand, within ABZR86_RS01955 at 423.420 kb on - strand, within ABZR86_RS01955 at 423.420 kb on - strand, within ABZR86_RS01955
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.01 mg/ml remove 422,096 + ABZR86_RS01945 0.47 -0.3 422,096 + ABZR86_RS01945 0.47 +0.2 422,097 - ABZR86_RS01945 0.48 -0.6 422,097 - ABZR86_RS01945 0.48 +1.3 422,097 - ABZR86_RS01945 0.48 +1.9 422,097 - ABZR86_RS01945 0.48 +0.8 422,097 - ABZR86_RS01945 0.48 +1.7 422,333 + +0.3 422,333 + -0.5 422,333 + -0.5 422,333 + -0.4 422,333 + +0.1 422,486 + -0.8 422,599 - +0.3 422,609 + -0.3 422,609 + +0.4 422,610 - -0.2 422,622 + -0.8 422,623 - +0.9 422,665 + -0.2 422,665 + +1.5 422,665 + -0.3 422,697 - +0.4 422,697 - -0.3 422,718 + -0.7 422,719 - +1.7 422,719 - +0.6 422,831 + ABZR86_RS01955 0.18 -0.9 422,831 + ABZR86_RS01955 0.18 -0.3 422,832 - ABZR86_RS01955 0.18 -0.1 422,832 - ABZR86_RS01955 0.18 +0.1 422,859 + ABZR86_RS01955 0.20 +0.0 422,859 + ABZR86_RS01955 0.20 -0.8 422,859 + ABZR86_RS01955 0.20 -0.6 422,860 - ABZR86_RS01955 0.20 -0.5 422,860 - ABZR86_RS01955 0.20 +0.3 422,860 - ABZR86_RS01955 0.20 +0.1 422,860 - ABZR86_RS01955 0.20 -0.1 423,020 - ABZR86_RS01955 0.32 +0.2 423,020 - ABZR86_RS01955 0.32 -2.0 423,020 - ABZR86_RS01955 0.32 +0.1 423,049 + ABZR86_RS01955 0.35 +0.5 423,049 + ABZR86_RS01955 0.35 +0.3 423,049 + ABZR86_RS01955 0.35 -0.6 423,049 + ABZR86_RS01955 0.35 -1.2 423,050 - ABZR86_RS01955 0.35 +0.3 423,050 - ABZR86_RS01955 0.35 -0.5 423,050 - ABZR86_RS01955 0.35 -0.7 423,050 - ABZR86_RS01955 0.35 -0.9 423,050 - ABZR86_RS01955 0.35 +0.4 423,050 - ABZR86_RS01955 0.35 -0.3 423,050 - ABZR86_RS01955 0.35 -0.5 423,053 + ABZR86_RS01955 0.35 +0.2 423,053 + ABZR86_RS01955 0.35 -0.1 423,053 + ABZR86_RS01955 0.35 +0.1 423,054 - ABZR86_RS01955 0.35 +0.3 423,054 - ABZR86_RS01955 0.35 +0.2 423,054 - ABZR86_RS01955 0.35 +0.0 423,054 - ABZR86_RS01955 0.35 -0.7 423,166 + ABZR86_RS01955 0.44 -1.8 423,166 + ABZR86_RS01955 0.44 +0.2 423,166 + ABZR86_RS01955 0.44 +0.2 423,166 + ABZR86_RS01955 0.44 -0.4 423,166 + ABZR86_RS01955 0.44 -0.2 423,167 - ABZR86_RS01955 0.44 +0.2 423,167 - ABZR86_RS01955 0.44 +1.0 423,167 - ABZR86_RS01955 0.44 -0.1 423,167 - ABZR86_RS01955 0.44 -0.1 423,167 - ABZR86_RS01955 0.44 -0.0 423,210 + ABZR86_RS01955 0.47 -0.0 423,210 + ABZR86_RS01955 0.47 +0.0 423,210 + ABZR86_RS01955 0.47 -0.2 423,211 - ABZR86_RS01955 0.47 +0.0 423,267 + ABZR86_RS01955 0.51 +0.3 423,268 - ABZR86_RS01955 0.51 -0.1 423,268 - ABZR86_RS01955 0.51 -0.2 423,322 + ABZR86_RS01955 0.56 +0.6 423,322 + ABZR86_RS01955 0.56 -0.9 423,322 + ABZR86_RS01955 0.56 +0.5 423,322 + ABZR86_RS01955 0.56 +0.1 423,322 + ABZR86_RS01955 0.56 -0.3 423,323 - ABZR86_RS01955 0.56 +0.7 423,323 - ABZR86_RS01955 0.56 +0.5 423,323 - ABZR86_RS01955 0.56 -0.7 423,323 - ABZR86_RS01955 0.56 +1.5 423,345 - ABZR86_RS01955 0.57 +0.3 423,419 + ABZR86_RS01955 0.63 -0.6 423,419 + ABZR86_RS01955 0.63 +0.5 423,419 + ABZR86_RS01955 0.63 -0.3 423,419 + ABZR86_RS01955 0.63 -0.1 423,419 + ABZR86_RS01955 0.63 +0.5 423,419 + ABZR86_RS01955 0.63 +1.7 423,420 - ABZR86_RS01955 0.63 +0.8 423,420 - ABZR86_RS01955 0.63 -1.1 423,420 - ABZR86_RS01955 0.63 +0.6 423,420 - ABZR86_RS01955 0.63 +0.1 423,420 - ABZR86_RS01955 0.63 +0.3 423,420 - ABZR86_RS01955 0.63 -0.4
Or see this region's nucleotide sequence