Experiment: Chlorite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0598 and tRNA-Met are separated by 242 nucleotides tRNA-Met and Synpcc7942_0599 are separated by 14 nucleotides Synpcc7942_0599 and prkE are separated by 123 nucleotides
Synpcc7942_0598: Synpcc7942_0598 - Peptidoglycan-binding LysM, at 585,701 to 587,473
_0598
Synpcc7942_R0035: tRNA-Met - tRNA-Met, at 587,716 to 587,787
tRNA-Met
Synpcc7942_0599: Synpcc7942_0599 - putative transcriptional regulator, TetR family, at 587,802 to 588,404
_0599
Synpcc7942_0600: prkE - serine/threonine protein kinase, at 588,528 to 590,060
prkE
Position (kb) 587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 587.492 kb on - strand at 587.538 kb on - strand at 587.575 kb on - strand at 587.575 kb on - strand at 587.576 kb on - strand at 587.600 kb on + strand at 587.602 kb on + strand at 587.610 kb on - strand at 587.626 kb on + strand at 587.626 kb on + strand at 587.626 kb on + strand at 587.626 kb on + strand at 587.626 kb on + strand at 587.627 kb on - strand at 587.634 kb on - strand at 587.634 kb on - strand at 587.634 kb on - strand at 587.642 kb on - strand at 587.803 kb on + strand at 587.831 kb on - strand at 587.924 kb on - strand at 587.938 kb on - strand, within Synpcc7942_0599 at 587.946 kb on - strand, within Synpcc7942_0599 at 587.958 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.966 kb on - strand, within Synpcc7942_0599 at 587.966 kb on - strand, within Synpcc7942_0599 at 587.971 kb on - strand, within Synpcc7942_0599 at 587.971 kb on - strand, within Synpcc7942_0599 at 588.028 kb on + strand, within Synpcc7942_0599 at 588.089 kb on + strand, within Synpcc7942_0599 at 588.089 kb on + strand, within Synpcc7942_0599 at 588.096 kb on + strand, within Synpcc7942_0599 at 588.096 kb on + strand, within Synpcc7942_0599 at 588.099 kb on - strand, within Synpcc7942_0599 at 588.104 kb on - strand, within Synpcc7942_0599 at 588.104 kb on - strand, within Synpcc7942_0599 at 588.109 kb on - strand, within Synpcc7942_0599 at 588.109 kb on - strand, within Synpcc7942_0599 at 588.112 kb on + strand, within Synpcc7942_0599 at 588.143 kb on - strand, within Synpcc7942_0599 at 588.143 kb on - strand, within Synpcc7942_0599 at 588.148 kb on - strand, within Synpcc7942_0599 at 588.152 kb on + strand at 588.194 kb on + strand, within Synpcc7942_0599 at 588.201 kb on + strand, within Synpcc7942_0599 at 588.308 kb on + strand, within Synpcc7942_0599 at 588.323 kb on - strand, within Synpcc7942_0599 at 588.341 kb on - strand, within Synpcc7942_0599 at 588.379 kb on - strand at 588.379 kb on - strand at 588.408 kb on + strand at 588.431 kb on - strand at 588.435 kb on - strand at 588.435 kb on - strand at 588.444 kb on + strand at 588.444 kb on + strand at 588.446 kb on + strand at 588.452 kb on - strand at 588.459 kb on + strand at 588.466 kb on - strand at 588.476 kb on - strand at 588.476 kb on - strand at 588.493 kb on + strand at 588.494 kb on + strand at 588.494 kb on + strand at 588.538 kb on + strand at 588.545 kb on + strand at 588.548 kb on + strand at 588.555 kb on + strand at 588.555 kb on + strand at 588.558 kb on - strand at 588.558 kb on - strand at 588.560 kb on + strand at 588.560 kb on + strand at 588.560 kb on + strand at 588.563 kb on - strand at 588.563 kb on - strand at 588.566 kb on - strand at 588.568 kb on - strand at 588.568 kb on - strand at 588.568 kb on - strand at 588.569 kb on - strand at 588.603 kb on + strand at 588.633 kb on + strand at 588.634 kb on - strand at 588.654 kb on + strand at 588.654 kb on + strand at 588.654 kb on + strand at 588.667 kb on - strand at 588.684 kb on + strand, within prkE at 588.693 kb on - strand, within prkE at 588.693 kb on - strand, within prkE at 588.708 kb on + strand, within prkE at 588.715 kb on - strand, within prkE at 588.739 kb on - strand, within prkE at 588.778 kb on - strand, within prkE at 588.812 kb on + strand, within prkE at 588.840 kb on + strand, within prkE at 588.848 kb on - strand, within prkE at 588.853 kb on - strand, within prkE at 588.861 kb on + strand, within prkE at 588.866 kb on + strand, within prkE at 588.869 kb on - strand, within prkE at 588.869 kb on - strand, within prkE at 588.874 kb on - strand, within prkE at 588.874 kb on - strand, within prkE at 588.874 kb on - strand, within prkE at 588.877 kb on + strand, within prkE at 588.895 kb on - strand, within prkE at 588.899 kb on + strand, within prkE at 588.899 kb on + strand at 588.899 kb on + strand, within prkE at 588.907 kb on + strand, within prkE at 588.907 kb on - strand, within prkE at 588.907 kb on - strand, within prkE at 588.908 kb on - strand, within prkE at 588.915 kb on - strand, within prkE at 588.919 kb on + strand, within prkE at 588.975 kb on + strand, within prkE at 588.978 kb on + strand, within prkE at 589.001 kb on + strand, within prkE at 589.005 kb on + strand, within prkE at 589.050 kb on + strand, within prkE at 589.058 kb on - strand, within prkE at 589.068 kb on + strand, within prkE at 589.080 kb on + strand, within prkE at 589.109 kb on + strand, within prkE at 589.115 kb on - strand, within prkE at 589.119 kb on + strand, within prkE at 589.119 kb on - strand, within prkE at 589.127 kb on - strand, within prkE at 589.140 kb on + strand, within prkE at 589.140 kb on + strand, within prkE at 589.140 kb on + strand, within prkE at 589.147 kb on + strand, within prkE at 589.148 kb on - strand, within prkE at 589.148 kb on - strand, within prkE at 589.173 kb on + strand, within prkE at 589.204 kb on - strand, within prkE at 589.204 kb on - strand, within prkE at 589.206 kb on + strand, within prkE at 589.207 kb on + strand, within prkE at 589.214 kb on - strand, within prkE at 589.214 kb on - strand, within prkE at 589.234 kb on + strand, within prkE at 589.242 kb on - strand, within prkE at 589.289 kb on - strand, within prkE at 589.300 kb on + strand, within prkE at 589.301 kb on + strand, within prkE at 589.301 kb on + strand at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.322 kb on + strand, within prkE at 589.347 kb on - strand, within prkE at 589.365 kb on + strand, within prkE at 589.371 kb on - strand, within prkE at 589.373 kb on - strand, within prkE at 589.382 kb on - strand, within prkE
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 20 mM remove 587,492 - +0.7 587,538 - +0.6 587,575 - -0.1 587,575 - -2.7 587,576 - +0.3 587,600 + -1.1 587,602 + +2.3 587,610 - +0.4 587,626 + +2.6 587,626 + +0.1 587,626 + +0.3 587,626 + -3.7 587,626 + -0.7 587,627 - -3.0 587,634 - -0.4 587,634 - -1.7 587,634 - +0.6 587,642 - +0.3 587,803 + +0.3 587,831 - -1.0 587,924 - -1.7 587,938 - Synpcc7942_0599 0.23 +1.4 587,946 - Synpcc7942_0599 0.24 +0.5 587,958 + Synpcc7942_0599 0.26 +2.0 587,963 + Synpcc7942_0599 0.27 +0.3 587,963 + Synpcc7942_0599 0.27 +0.7 587,963 + Synpcc7942_0599 0.27 -0.1 587,963 + Synpcc7942_0599 0.27 -2.1 587,963 + Synpcc7942_0599 0.27 -0.4 587,966 - Synpcc7942_0599 0.27 -0.7 587,966 - Synpcc7942_0599 0.27 -2.7 587,971 - Synpcc7942_0599 0.28 -0.5 587,971 - Synpcc7942_0599 0.28 +0.4 588,028 + Synpcc7942_0599 0.37 +1.1 588,089 + Synpcc7942_0599 0.48 -1.1 588,089 + Synpcc7942_0599 0.48 +3.3 588,096 + Synpcc7942_0599 0.49 -0.3 588,096 + Synpcc7942_0599 0.49 +1.1 588,099 - Synpcc7942_0599 0.49 +0.2 588,104 - Synpcc7942_0599 0.50 +0.5 588,104 - Synpcc7942_0599 0.50 +0.8 588,109 - Synpcc7942_0599 0.51 -0.7 588,109 - Synpcc7942_0599 0.51 -0.7 588,112 + Synpcc7942_0599 0.51 +0.1 588,143 - Synpcc7942_0599 0.57 -0.1 588,143 - Synpcc7942_0599 0.57 -2.1 588,148 - Synpcc7942_0599 0.57 -3.3 588,152 + -1.7 588,194 + Synpcc7942_0599 0.65 +0.1 588,201 + Synpcc7942_0599 0.66 +0.5 588,308 + Synpcc7942_0599 0.84 -0.0 588,323 - Synpcc7942_0599 0.86 -0.1 588,341 - Synpcc7942_0599 0.89 -0.4 588,379 - +0.4 588,379 - -1.7 588,408 + -0.4 588,431 - -0.1 588,435 - -1.0 588,435 - -2.1 588,444 + +2.0 588,444 + +1.2 588,446 + +1.5 588,452 - -1.0 588,459 + -0.4 588,466 - -0.7 588,476 - -2.1 588,476 - +1.2 588,493 + +1.5 588,494 + +0.2 588,494 + +0.1 588,538 + -0.1 588,545 + +0.4 588,548 + +0.4 588,555 + +1.2 588,555 + +2.9 588,558 - +0.9 588,558 - +0.0 588,560 + -3.3 588,560 + +0.8 588,560 + +1.5 588,563 - +2.0 588,563 - -1.7 588,566 - +0.4 588,568 - -0.1 588,568 - +0.4 588,568 - -1.7 588,569 - -0.5 588,603 + +0.5 588,633 + +2.0 588,634 - +0.3 588,654 + +1.9 588,654 + -2.3 588,654 + +0.5 588,667 - +0.4 588,684 + prkE Synpcc7942_0600 0.10 +0.5 588,693 - prkE Synpcc7942_0600 0.11 +0.3 588,693 - prkE Synpcc7942_0600 0.11 +0.9 588,708 + prkE Synpcc7942_0600 0.12 +0.6 588,715 - prkE Synpcc7942_0600 0.12 +0.1 588,739 - prkE Synpcc7942_0600 0.14 +0.6 588,778 - prkE Synpcc7942_0600 0.16 -1.7 588,812 + prkE Synpcc7942_0600 0.19 +0.9 588,840 + prkE Synpcc7942_0600 0.20 -0.4 588,848 - prkE Synpcc7942_0600 0.21 +1.9 588,853 - prkE Synpcc7942_0600 0.21 -0.0 588,861 + prkE Synpcc7942_0600 0.22 +0.6 588,866 + prkE Synpcc7942_0600 0.22 +0.1 588,869 - prkE Synpcc7942_0600 0.22 +0.3 588,869 - prkE Synpcc7942_0600 0.22 -1.3 588,874 - prkE Synpcc7942_0600 0.23 +0.7 588,874 - prkE Synpcc7942_0600 0.23 +0.6 588,874 - prkE Synpcc7942_0600 0.23 +1.1 588,877 + prkE Synpcc7942_0600 0.23 +0.6 588,895 - prkE Synpcc7942_0600 0.24 +1.7 588,899 + prkE Synpcc7942_0600 0.24 +1.0 588,899 + -0.1 588,899 + prkE Synpcc7942_0600 0.24 -1.7 588,907 + prkE Synpcc7942_0600 0.25 +2.6 588,907 - prkE Synpcc7942_0600 0.25 +0.3 588,907 - prkE Synpcc7942_0600 0.25 +1.0 588,908 - prkE Synpcc7942_0600 0.25 +0.1 588,915 - prkE Synpcc7942_0600 0.25 -1.7 588,919 + prkE Synpcc7942_0600 0.26 +0.6 588,975 + prkE Synpcc7942_0600 0.29 -1.7 588,978 + prkE Synpcc7942_0600 0.29 +0.7 589,001 + prkE Synpcc7942_0600 0.31 -0.7 589,005 + prkE Synpcc7942_0600 0.31 +0.8 589,050 + prkE Synpcc7942_0600 0.34 +0.2 589,058 - prkE Synpcc7942_0600 0.35 -1.3 589,068 + prkE Synpcc7942_0600 0.35 +0.5 589,080 + prkE Synpcc7942_0600 0.36 +2.0 589,109 + prkE Synpcc7942_0600 0.38 +0.3 589,115 - prkE Synpcc7942_0600 0.38 +1.3 589,119 + prkE Synpcc7942_0600 0.39 -1.2 589,119 - prkE Synpcc7942_0600 0.39 +0.9 589,127 - prkE Synpcc7942_0600 0.39 -2.3 589,140 + prkE Synpcc7942_0600 0.40 +1.0 589,140 + prkE Synpcc7942_0600 0.40 -0.3 589,140 + prkE Synpcc7942_0600 0.40 -0.7 589,147 + prkE Synpcc7942_0600 0.40 +1.8 589,148 - prkE Synpcc7942_0600 0.40 +0.5 589,148 - prkE Synpcc7942_0600 0.40 +0.5 589,173 + prkE Synpcc7942_0600 0.42 +1.6 589,204 - prkE Synpcc7942_0600 0.44 +0.3 589,204 - prkE Synpcc7942_0600 0.44 -1.5 589,206 + prkE Synpcc7942_0600 0.44 +0.3 589,207 + prkE Synpcc7942_0600 0.44 -1.7 589,214 - prkE Synpcc7942_0600 0.45 +1.2 589,214 - prkE Synpcc7942_0600 0.45 -0.1 589,234 + prkE Synpcc7942_0600 0.46 +1.4 589,242 - prkE Synpcc7942_0600 0.47 +0.5 589,289 - prkE Synpcc7942_0600 0.50 +1.1 589,300 + prkE Synpcc7942_0600 0.50 -1.3 589,301 + prkE Synpcc7942_0600 0.50 +1.0 589,301 + -0.1 589,309 - prkE Synpcc7942_0600 0.51 -3.3 589,309 - prkE Synpcc7942_0600 0.51 -0.1 589,309 - prkE Synpcc7942_0600 0.51 +1.3 589,309 - prkE Synpcc7942_0600 0.51 +0.1 589,322 + prkE Synpcc7942_0600 0.52 +1.0 589,347 - prkE Synpcc7942_0600 0.53 -0.8 589,365 + prkE Synpcc7942_0600 0.55 -0.1 589,371 - prkE Synpcc7942_0600 0.55 +0.4 589,373 - prkE Synpcc7942_0600 0.55 +1.1 589,382 - prkE Synpcc7942_0600 0.56 -2.7
Or see this region's nucleotide sequence