Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4609 and Psyr_4610 are separated by 70 nucleotides Psyr_4610 and Psyr_4611 overlap by 4 nucleotides Psyr_4611 and Psyr_4612 are separated by 186 nucleotides
Psyr_4609: Psyr_4609 - anthranilate synthase, component I, at 5,466,494 to 5,467,975
_4609
Psyr_4610: Psyr_4610 - phosphoglycolate phosphatase, at 5,468,046 to 5,468,864
_4610
Psyr_4611: Psyr_4611 - ribulose-5-phosphate 3-epimerase, at 5,468,861 to 5,469,535
_4611
Psyr_4612: Psyr_4612 - Binding-protein-dependent transport systems inner membrane component, at 5,469,722 to 5,470,543
_4612
Position (kb) 5468
5469
5470 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5467.875 kb on + strand at 5467.876 kb on - strand at 5467.935 kb on + strand at 5467.936 kb on - strand at 5467.936 kb on - strand at 5468.011 kb on - strand at 5468.011 kb on - strand at 5468.157 kb on + strand, within Psyr_4610 at 5468.157 kb on + strand, within Psyr_4610 at 5468.157 kb on + strand, within Psyr_4610 at 5468.157 kb on + strand, within Psyr_4610 at 5468.157 kb on + strand, within Psyr_4610 at 5468.158 kb on - strand, within Psyr_4610 at 5468.158 kb on - strand, within Psyr_4610 at 5468.158 kb on - strand, within Psyr_4610 at 5468.158 kb on - strand, within Psyr_4610 at 5468.254 kb on + strand, within Psyr_4610 at 5468.255 kb on - strand, within Psyr_4610 at 5468.261 kb on - strand, within Psyr_4610 at 5468.588 kb on - strand, within Psyr_4610 at 5469.574 kb on + strand at 5469.575 kb on - strand at 5469.575 kb on - strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.706 kb on - strand at 5469.706 kb on - strand at 5469.706 kb on - strand at 5469.706 kb on - strand at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.128 kb on + strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.129 kb on - strand, within Psyr_4612 at 5470.132 kb on + strand, within Psyr_4612 at 5470.132 kb on + strand, within Psyr_4612 at 5470.165 kb on - strand, within Psyr_4612 at 5470.165 kb on - strand, within Psyr_4612 at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.500 kb on + strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.501 kb on - strand at 5470.504 kb on - strand at 5470.504 kb on - strand at 5470.504 kb on - strand at 5470.531 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,467,875 + -2.6 5,467,876 - -3.8 5,467,935 + -2.5 5,467,936 - -0.3 5,467,936 - -2.7 5,468,011 - +0.9 5,468,011 - +1.3 5,468,157 + Psyr_4610 0.14 -0.8 5,468,157 + Psyr_4610 0.14 -0.5 5,468,157 + Psyr_4610 0.14 -1.4 5,468,157 + Psyr_4610 0.14 -0.8 5,468,157 + Psyr_4610 0.14 +0.1 5,468,158 - Psyr_4610 0.14 -1.8 5,468,158 - Psyr_4610 0.14 +1.0 5,468,158 - Psyr_4610 0.14 -0.2 5,468,158 - Psyr_4610 0.14 +0.3 5,468,254 + Psyr_4610 0.25 -1.0 5,468,255 - Psyr_4610 0.26 -0.1 5,468,261 - Psyr_4610 0.26 +1.6 5,468,588 - Psyr_4610 0.66 -0.9 5,469,574 + -0.4 5,469,575 - -0.6 5,469,575 - +0.3 5,469,705 + +0.4 5,469,705 + -0.9 5,469,705 + -0.5 5,469,705 + +0.7 5,469,705 + -1.3 5,469,706 - +0.2 5,469,706 - +1.2 5,469,706 - -0.2 5,469,706 - +0.9 5,470,128 + Psyr_4612 0.49 -0.3 5,470,128 + Psyr_4612 0.49 +0.8 5,470,128 + Psyr_4612 0.49 -0.5 5,470,128 + Psyr_4612 0.49 -0.3 5,470,128 + Psyr_4612 0.49 +0.3 5,470,128 + Psyr_4612 0.49 -0.3 5,470,128 + Psyr_4612 0.49 +1.3 5,470,128 + Psyr_4612 0.49 +0.1 5,470,129 - Psyr_4612 0.50 -1.0 5,470,129 - Psyr_4612 0.50 -0.3 5,470,129 - Psyr_4612 0.50 +0.1 5,470,129 - Psyr_4612 0.50 +1.3 5,470,129 - Psyr_4612 0.50 +0.6 5,470,129 - Psyr_4612 0.50 -0.6 5,470,129 - Psyr_4612 0.50 +0.5 5,470,129 - Psyr_4612 0.50 -1.4 5,470,129 - Psyr_4612 0.50 +0.1 5,470,129 - Psyr_4612 0.50 +1.4 5,470,129 - Psyr_4612 0.50 +1.0 5,470,129 - Psyr_4612 0.50 -0.1 5,470,132 + Psyr_4612 0.50 -0.3 5,470,132 + Psyr_4612 0.50 +0.3 5,470,165 - Psyr_4612 0.54 +0.0 5,470,165 - Psyr_4612 0.54 +1.0 5,470,500 + +0.5 5,470,500 + -0.8 5,470,500 + +0.7 5,470,500 + -1.5 5,470,500 + -1.7 5,470,500 + +0.2 5,470,501 - +0.1 5,470,501 - -0.0 5,470,501 - +0.3 5,470,501 - -1.2 5,470,501 - +0.6 5,470,501 - +0.0 5,470,504 - -0.5 5,470,504 - +0.9 5,470,504 - -1.6 5,470,531 - +0.3
Or see this region's nucleotide sequence