Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3859

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3858 and Psyr_3859 are separated by 26 nucleotidesPsyr_3859 and Psyr_3860 are separated by 66 nucleotidesPsyr_3860 and Psyr_3861 overlap by 8 nucleotides Psyr_3858: Psyr_3858 - Nucleoside-specific channel-forming protein, Tsx, at 4,598,394 to 4,599,353 _3858 Psyr_3859: Psyr_3859 - Purine nucleoside permease, at 4,599,380 to 4,600,411 _3859 Psyr_3860: Psyr_3860 - conserved hypothetical protein, at 4,600,478 to 4,601,236 _3860 Psyr_3861: Psyr_3861 - Protein of unknown function DUF1145, at 4,601,229 to 4,601,504 _3861 Position (kb) 4599 4600 4601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4598.564 kb on + strand, within Psyr_3858at 4598.565 kb on - strand, within Psyr_3858at 4598.565 kb on - strand, within Psyr_3858at 4598.575 kb on - strand, within Psyr_3858at 4598.658 kb on + strand, within Psyr_3858at 4598.658 kb on + strand, within Psyr_3858at 4598.658 kb on + strand, within Psyr_3858at 4598.658 kb on + strand, within Psyr_3858at 4598.659 kb on - strand, within Psyr_3858at 4598.659 kb on - strand, within Psyr_3858at 4598.659 kb on - strand, within Psyr_3858at 4598.668 kb on - strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.674 kb on - strand, within Psyr_3858at 4598.674 kb on - strand, within Psyr_3858at 4598.704 kb on - strand, within Psyr_3858at 4598.704 kb on - strand, within Psyr_3858at 4598.704 kb on - strand, within Psyr_3858at 4598.704 kb on - strand, within Psyr_3858at 4598.709 kb on + strand, within Psyr_3858at 4598.710 kb on - strand, within Psyr_3858at 4598.710 kb on - strand, within Psyr_3858at 4598.710 kb on - strand, within Psyr_3858at 4598.817 kb on + strand, within Psyr_3858at 4598.862 kb on + strand, within Psyr_3858at 4598.862 kb on + strand, within Psyr_3858at 4598.862 kb on + strand, within Psyr_3858at 4598.862 kb on + strand, within Psyr_3858at 4598.863 kb on - strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.884 kb on - strand, within Psyr_3858at 4598.884 kb on - strand, within Psyr_3858at 4598.884 kb on - strand, within Psyr_3858at 4598.925 kb on + strand, within Psyr_3858at 4598.985 kb on + strand, within Psyr_3858at 4598.994 kb on + strand, within Psyr_3858at 4599.009 kb on + strand, within Psyr_3858at 4599.010 kb on - strand, within Psyr_3858at 4599.027 kb on + strand, within Psyr_3858at 4599.027 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.105 kb on + strand, within Psyr_3858at 4599.105 kb on + strand, within Psyr_3858at 4599.105 kb on + strand, within Psyr_3858at 4599.106 kb on - strand, within Psyr_3858at 4599.106 kb on - strand, within Psyr_3858at 4599.106 kb on - strand, within Psyr_3858at 4599.198 kb on + strand, within Psyr_3858at 4599.198 kb on + strand, within Psyr_3858at 4599.198 kb on + strand, within Psyr_3858at 4599.199 kb on - strand, within Psyr_3858at 4599.237 kb on + strand, within Psyr_3858at 4599.237 kb on + strand, within Psyr_3858at 4599.324 kb on + strandat 4599.324 kb on + strandat 4599.325 kb on - strandat 4599.325 kb on - strandat 4599.328 kb on - strandat 4599.358 kb on + strandat 4599.358 kb on + strandat 4599.359 kb on - strandat 4599.361 kb on + strandat 4599.362 kb on - strandat 4599.362 kb on - strandat 4599.698 kb on + strand, within Psyr_3859at 4599.698 kb on + strand, within Psyr_3859at 4599.698 kb on + strand, within Psyr_3859at 4599.698 kb on + strand, within Psyr_3859at 4599.698 kb on + strand, within Psyr_3859at 4599.698 kb on + strand, within Psyr_3859at 4599.699 kb on - strand, within Psyr_3859at 4599.699 kb on - strand, within Psyr_3859at 4599.699 kb on - strand, within Psyr_3859at 4599.699 kb on - strand, within Psyr_3859at 4599.770 kb on + strand, within Psyr_3859at 4599.888 kb on - strand, within Psyr_3859at 4599.999 kb on - strand, within Psyr_3859at 4599.999 kb on - strand, within Psyr_3859at 4599.999 kb on - strand, within Psyr_3859at 4599.999 kb on - strand, within Psyr_3859at 4599.999 kb on - strand, within Psyr_3859at 4600.061 kb on - strand, within Psyr_3859at 4600.136 kb on + strand, within Psyr_3859at 4600.136 kb on + strand, within Psyr_3859at 4600.136 kb on + strand, within Psyr_3859at 4600.137 kb on - strand, within Psyr_3859at 4600.137 kb on - strand, within Psyr_3859at 4600.137 kb on - strand, within Psyr_3859at 4600.137 kb on - strand, within Psyr_3859at 4600.137 kb on - strand, within Psyr_3859at 4600.159 kb on + strand, within Psyr_3859at 4600.159 kb on + strand, within Psyr_3859at 4600.159 kb on + strand, within Psyr_3859at 4600.159 kb on + strand, within Psyr_3859at 4600.159 kb on + strand, within Psyr_3859at 4600.160 kb on - strand, within Psyr_3859at 4600.160 kb on - strand, within Psyr_3859at 4600.169 kb on + strand, within Psyr_3859at 4600.169 kb on + strand, within Psyr_3859at 4600.169 kb on + strand, within Psyr_3859at 4600.169 kb on + strand, within Psyr_3859at 4600.169 kb on + strand, within Psyr_3859at 4600.296 kb on - strand, within Psyr_3859at 4600.409 kb on + strandat 4600.479 kb on + strandat 4600.480 kb on - strandat 4600.579 kb on + strand, within Psyr_3860at 4600.579 kb on + strand, within Psyr_3860at 4600.750 kb on + strand, within Psyr_3860at 4600.752 kb on + strand, within Psyr_3860at 4600.752 kb on + strand, within Psyr_3860at 4600.753 kb on - strand, within Psyr_3860at 4600.819 kb on - strand, within Psyr_3860at 4600.990 kb on + strand, within Psyr_3860at 4600.990 kb on + strand, within Psyr_3860at 4600.991 kb on - strand, within Psyr_3860at 4600.991 kb on - strand, within Psyr_3860at 4600.991 kb on - strand, within Psyr_3860at 4600.991 kb on - strand, within Psyr_3860at 4600.991 kb on - strand, within Psyr_3860at 4601.176 kb on + strandat 4601.176 kb on + strandat 4601.177 kb on - strandat 4601.177 kb on - strandat 4601.230 kb on + strandat 4601.231 kb on - strandat 4601.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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4,598,564 + Psyr_3858 0.18 -1.6
4,598,565 - Psyr_3858 0.18 -1.0
4,598,565 - Psyr_3858 0.18 +1.9
4,598,575 - Psyr_3858 0.19 +1.1
4,598,658 + Psyr_3858 0.28 +0.3
4,598,658 + Psyr_3858 0.28 +1.2
4,598,658 + Psyr_3858 0.28 +0.4
4,598,658 + Psyr_3858 0.28 +0.6
4,598,659 - Psyr_3858 0.28 -1.4
4,598,659 - Psyr_3858 0.28 -2.6
4,598,659 - Psyr_3858 0.28 +0.5
4,598,668 - Psyr_3858 0.29 -0.2
4,598,673 + Psyr_3858 0.29 +0.9
4,598,673 + Psyr_3858 0.29 +1.5
4,598,673 + Psyr_3858 0.29 +0.4
4,598,673 + Psyr_3858 0.29 +0.4
4,598,673 + Psyr_3858 0.29 +1.5
4,598,673 + Psyr_3858 0.29 -0.1
4,598,674 - Psyr_3858 0.29 -0.9
4,598,674 - Psyr_3858 0.29 +0.2
4,598,704 - Psyr_3858 0.32 +0.6
4,598,704 - Psyr_3858 0.32 -0.4
4,598,704 - Psyr_3858 0.32 +0.9
4,598,704 - Psyr_3858 0.32 +0.9
4,598,709 + Psyr_3858 0.33 +0.1
4,598,710 - Psyr_3858 0.33 +0.0
4,598,710 - Psyr_3858 0.33 +0.7
4,598,710 - Psyr_3858 0.33 -1.5
4,598,817 + Psyr_3858 0.44 -0.1
4,598,862 + Psyr_3858 0.49 +3.7
4,598,862 + Psyr_3858 0.49 +1.2
4,598,862 + Psyr_3858 0.49 +0.0
4,598,862 + Psyr_3858 0.49 -0.0
4,598,863 - Psyr_3858 0.49 +1.1
4,598,883 + Psyr_3858 0.51 +0.4
4,598,883 + Psyr_3858 0.51 +0.0
4,598,883 + Psyr_3858 0.51 +1.0
4,598,883 + Psyr_3858 0.51 +0.4
4,598,883 + Psyr_3858 0.51 +0.5
4,598,883 + Psyr_3858 0.51 +0.1
4,598,883 + Psyr_3858 0.51 -0.2
4,598,883 + Psyr_3858 0.51 +1.1
4,598,883 + Psyr_3858 0.51 +0.8
4,598,883 + Psyr_3858 0.51 -0.9
4,598,884 - Psyr_3858 0.51 +0.2
4,598,884 - Psyr_3858 0.51 +0.8
4,598,884 - Psyr_3858 0.51 +0.1
4,598,925 + Psyr_3858 0.55 +1.9
4,598,985 + Psyr_3858 0.62 +1.0
4,598,994 + Psyr_3858 0.62 +1.3
4,599,009 + Psyr_3858 0.64 +0.2
4,599,010 - Psyr_3858 0.64 -0.4
4,599,027 + Psyr_3858 0.66 +0.7
4,599,027 + Psyr_3858 0.66 +0.8
4,599,060 + Psyr_3858 0.69 +0.9
4,599,060 + Psyr_3858 0.69 +0.1
4,599,060 + Psyr_3858 0.69 +0.2
4,599,060 + Psyr_3858 0.69 +0.4
4,599,060 + Psyr_3858 0.69 +1.1
4,599,060 + Psyr_3858 0.69 +0.5
4,599,061 - Psyr_3858 0.69 +1.6
4,599,061 - Psyr_3858 0.69 +0.2
4,599,061 - Psyr_3858 0.69 -0.9
4,599,061 - Psyr_3858 0.69 +1.2
4,599,061 - Psyr_3858 0.69 +0.3
4,599,105 + Psyr_3858 0.74 -0.5
4,599,105 + Psyr_3858 0.74 +0.2
4,599,105 + Psyr_3858 0.74 +0.6
4,599,106 - Psyr_3858 0.74 -3.5
4,599,106 - Psyr_3858 0.74 -0.1
4,599,106 - Psyr_3858 0.74 +0.8
4,599,198 + Psyr_3858 0.84 -0.1
4,599,198 + Psyr_3858 0.84 -0.6
4,599,198 + Psyr_3858 0.84 -0.6
4,599,199 - Psyr_3858 0.84 +0.2
4,599,237 + Psyr_3858 0.88 -1.1
4,599,237 + Psyr_3858 0.88 +0.5
4,599,324 + -0.0
4,599,324 + +0.2
4,599,325 - -0.1
4,599,325 - -2.1
4,599,328 - -0.1
4,599,358 + +1.2
4,599,358 + +0.1
4,599,359 - +0.7
4,599,361 + -0.1
4,599,362 - +0.7
4,599,362 - -0.2
4,599,698 + Psyr_3859 0.31 -0.5
4,599,698 + Psyr_3859 0.31 -0.8
4,599,698 + Psyr_3859 0.31 +1.5
4,599,698 + Psyr_3859 0.31 -1.5
4,599,698 + Psyr_3859 0.31 +0.1
4,599,698 + Psyr_3859 0.31 -0.5
4,599,699 - Psyr_3859 0.31 -1.5
4,599,699 - Psyr_3859 0.31 +0.1
4,599,699 - Psyr_3859 0.31 +0.7
4,599,699 - Psyr_3859 0.31 -0.3
4,599,770 + Psyr_3859 0.38 -0.0
4,599,888 - Psyr_3859 0.49 -2.4
4,599,999 - Psyr_3859 0.60 +0.2
4,599,999 - Psyr_3859 0.60 -0.2
4,599,999 - Psyr_3859 0.60 -0.3
4,599,999 - Psyr_3859 0.60 -0.6
4,599,999 - Psyr_3859 0.60 +0.6
4,600,061 - Psyr_3859 0.66 +1.9
4,600,136 + Psyr_3859 0.73 -0.1
4,600,136 + Psyr_3859 0.73 -2.1
4,600,136 + Psyr_3859 0.73 -0.1
4,600,137 - Psyr_3859 0.73 -0.2
4,600,137 - Psyr_3859 0.73 -0.8
4,600,137 - Psyr_3859 0.73 -0.0
4,600,137 - Psyr_3859 0.73 -0.6
4,600,137 - Psyr_3859 0.73 -1.9
4,600,159 + Psyr_3859 0.75 -1.1
4,600,159 + Psyr_3859 0.75 +0.7
4,600,159 + Psyr_3859 0.75 -0.7
4,600,159 + Psyr_3859 0.75 -0.8
4,600,159 + Psyr_3859 0.75 +0.4
4,600,160 - Psyr_3859 0.76 +0.4
4,600,160 - Psyr_3859 0.76 +0.4
4,600,169 + Psyr_3859 0.76 +0.2
4,600,169 + Psyr_3859 0.76 -1.1
4,600,169 + Psyr_3859 0.76 +1.2
4,600,169 + Psyr_3859 0.76 +2.8
4,600,169 + Psyr_3859 0.76 -2.5
4,600,296 - Psyr_3859 0.89 +0.3
4,600,409 + +0.4
4,600,479 + -1.1
4,600,480 - -1.2
4,600,579 + Psyr_3860 0.13 +0.5
4,600,579 + Psyr_3860 0.13 -0.8
4,600,750 + Psyr_3860 0.36 -0.3
4,600,752 + Psyr_3860 0.36 +1.0
4,600,752 + Psyr_3860 0.36 +0.7
4,600,753 - Psyr_3860 0.36 -0.2
4,600,819 - Psyr_3860 0.45 +1.4
4,600,990 + Psyr_3860 0.67 -0.0
4,600,990 + Psyr_3860 0.67 -0.3
4,600,991 - Psyr_3860 0.68 +0.3
4,600,991 - Psyr_3860 0.68 -1.6
4,600,991 - Psyr_3860 0.68 +0.5
4,600,991 - Psyr_3860 0.68 +2.1
4,600,991 - Psyr_3860 0.68 -1.9
4,601,176 + +0.7
4,601,176 + +0.1
4,601,177 - -0.6
4,601,177 - +0.5
4,601,230 + +0.4
4,601,231 - +0.7
4,601,231 - +0.5

Or see this region's nucleotide sequence