Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_762

Experiment: Carbenicillin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_760 and Pf1N1B4_761 are separated by 134 nucleotidesPf1N1B4_761 and Pf1N1B4_762 are separated by 403 nucleotidesPf1N1B4_762 and Pf1N1B4_763 overlap by 4 nucleotides Pf1N1B4_760 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 863,239 to 865,344 _760 Pf1N1B4_761 - FIG00954879: hypothetical protein, at 865,479 to 865,769 _761 Pf1N1B4_762 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 866,173 to 867,096 _762 Pf1N1B4_763 - Ferric iron ABC transporter, ATP-binding protein, at 867,093 to 868,202 _763 Position (kb) 866 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 865.255 kb on + strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.727 kb on + strandat 865.728 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.747 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.804 kb on + strandat 865.804 kb on + strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.941 kb on + strandat 865.941 kb on + strandat 865.941 kb on + strandat 865.942 kb on - strandat 865.951 kb on + strandat 866.052 kb on + strandat 866.098 kb on + strandat 866.128 kb on - strandat 866.143 kb on + strandat 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.675 kb on - strand, within Pf1N1B4_762at 866.675 kb on - strand, within Pf1N1B4_762at 866.676 kb on + strand, within Pf1N1B4_762at 866.676 kb on + strand, within Pf1N1B4_762at 866.676 kb on + strand, within Pf1N1B4_762at 866.677 kb on - strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strandat 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.714 kb on + strand, within Pf1N1B4_762at 867.628 kb on + strand, within Pf1N1B4_763at 867.628 kb on + strand, within Pf1N1B4_763at 867.629 kb on - strandat 867.629 kb on - strand, within Pf1N1B4_763at 867.629 kb on - strand, within Pf1N1B4_763at 867.757 kb on - strand, within Pf1N1B4_763at 867.765 kb on + strand, within Pf1N1B4_763at 867.814 kb on - strand, within Pf1N1B4_763at 867.832 kb on + strand, within Pf1N1B4_763at 867.833 kb on - strand, within Pf1N1B4_763at 867.872 kb on - strand, within Pf1N1B4_763at 867.872 kb on - strand, within Pf1N1B4_763at 867.888 kb on + strand, within Pf1N1B4_763at 867.888 kb on + strand, within Pf1N1B4_763at 867.889 kb on - strand, within Pf1N1B4_763at 867.889 kb on - strand, within Pf1N1B4_763at 867.889 kb on - strand, within Pf1N1B4_763at 868.090 kb on + strand, within Pf1N1B4_763

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml
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865,255 + -0.5
865,398 - +0.8
865,398 - -0.2
865,398 - +0.8
865,398 - -1.3
865,727 + -1.6
865,728 - Pf1N1B4_761 0.86 -0.6
865,738 - Pf1N1B4_761 0.89 -1.8
865,738 - Pf1N1B4_761 0.89 +1.0
865,738 - Pf1N1B4_761 0.89 +0.1
865,738 - Pf1N1B4_761 0.89 +0.5
865,747 - +1.0
865,801 - -1.3
865,801 - +0.1
865,801 - -1.2
865,801 - -0.2
865,801 - +0.6
865,801 - -1.6
865,804 + -0.8
865,804 + -1.8
865,805 - +0.3
865,805 - +0.0
865,805 - +0.8
865,805 - -0.2
865,941 + +0.0
865,941 + -0.1
865,941 + +1.5
865,942 - -0.8
865,951 + -0.3
866,052 + +2.0
866,098 + +0.4
866,128 - -1.3
866,143 + +0.0
866,674 + Pf1N1B4_762 0.54 -1.8
866,674 + Pf1N1B4_762 0.54 +0.0
866,674 + Pf1N1B4_762 0.54 -2.4
866,674 + Pf1N1B4_762 0.54 -0.3
866,674 + Pf1N1B4_762 0.54 -0.3
866,674 + Pf1N1B4_762 0.54 +1.0
866,674 + Pf1N1B4_762 0.54 +0.3
866,674 + Pf1N1B4_762 0.54 +0.0
866,675 - Pf1N1B4_762 0.54 -1.3
866,675 - Pf1N1B4_762 0.54 +0.2
866,676 + Pf1N1B4_762 0.54 +0.4
866,676 + Pf1N1B4_762 0.54 -1.0
866,676 + Pf1N1B4_762 0.54 -1.5
866,677 - Pf1N1B4_762 0.55 +0.0
866,678 + Pf1N1B4_762 0.55 +0.0
866,678 + Pf1N1B4_762 0.55 +1.0
866,678 + Pf1N1B4_762 0.55 -2.0
866,678 + Pf1N1B4_762 0.55 -1.4
866,678 + +1.0
866,678 + Pf1N1B4_762 0.55 -2.0
866,678 + Pf1N1B4_762 0.55 +0.2
866,678 + Pf1N1B4_762 0.55 +3.1
866,678 + Pf1N1B4_762 0.55 +1.0
866,678 + Pf1N1B4_762 0.55 +0.4
866,678 + Pf1N1B4_762 0.55 -1.6
866,679 - Pf1N1B4_762 0.55 -0.6
866,679 - Pf1N1B4_762 0.55 -1.3
866,679 - Pf1N1B4_762 0.55 -1.3
866,679 - Pf1N1B4_762 0.55 -1.3
866,679 - Pf1N1B4_762 0.55 +2.0
866,679 - Pf1N1B4_762 0.55 -1.6
866,679 - Pf1N1B4_762 0.55 +0.0
866,679 - Pf1N1B4_762 0.55 +0.0
866,679 - Pf1N1B4_762 0.55 -0.3
866,679 - Pf1N1B4_762 0.55 +0.4
866,679 - Pf1N1B4_762 0.55 +0.4
866,714 + Pf1N1B4_762 0.59 -1.0
867,628 + Pf1N1B4_763 0.48 +0.4
867,628 + Pf1N1B4_763 0.48 +0.6
867,629 - +1.0
867,629 - Pf1N1B4_763 0.48 -0.4
867,629 - Pf1N1B4_763 0.48 +1.0
867,757 - Pf1N1B4_763 0.60 -1.3
867,765 + Pf1N1B4_763 0.61 +0.6
867,814 - Pf1N1B4_763 0.65 -1.6
867,832 + Pf1N1B4_763 0.67 -3.0
867,833 - Pf1N1B4_763 0.67 +1.0
867,872 - Pf1N1B4_763 0.70 +1.4
867,872 - Pf1N1B4_763 0.70 +0.0
867,888 + Pf1N1B4_763 0.72 +0.0
867,888 + Pf1N1B4_763 0.72 +0.0
867,889 - Pf1N1B4_763 0.72 -0.3
867,889 - Pf1N1B4_763 0.72 -1.0
867,889 - Pf1N1B4_763 0.72 -0.6
868,090 + Pf1N1B4_763 0.90 -0.4

Or see this region's nucleotide sequence