Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_708 and Pf1N1B4_709 are separated by 96 nucleotides Pf1N1B4_709 and Pf1N1B4_710 are separated by 6 nucleotides Pf1N1B4_710 and Pf1N1B4_711 are separated by 176 nucleotides
Pf1N1B4_708 - Chromosome initiation inhibitor, at 808,026 to 808,925
_708
Pf1N1B4_709 - FIG00953860: hypothetical protein, at 809,022 to 809,423
_709
Pf1N1B4_710 - Transporter, LysE family, at 809,430 to 810,032
_710
Pf1N1B4_711 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 810,209 to 810,805
_711
Position (kb) 809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 808.148 kb on + strand at 808.148 kb on + strand, within Pf1N1B4_708 at 808.148 kb on + strand, within Pf1N1B4_708 at 808.148 kb on + strand, within Pf1N1B4_708 at 808.149 kb on - strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.270 kb on - strand, within Pf1N1B4_708 at 808.270 kb on - strand at 808.270 kb on - strand, within Pf1N1B4_708 at 808.270 kb on - strand at 808.270 kb on - strand, within Pf1N1B4_708 at 808.270 kb on - strand, within Pf1N1B4_708 at 808.324 kb on - strand, within Pf1N1B4_708 at 808.549 kb on - strand, within Pf1N1B4_708 at 808.908 kb on + strand at 808.908 kb on + strand at 808.909 kb on - strand at 808.909 kb on - strand at 808.916 kb on - strand at 809.088 kb on + strand, within Pf1N1B4_709 at 809.088 kb on + strand, within Pf1N1B4_709 at 809.088 kb on + strand, within Pf1N1B4_709 at 809.088 kb on + strand, within Pf1N1B4_709 at 809.088 kb on + strand, within Pf1N1B4_709 at 809.089 kb on - strand, within Pf1N1B4_709 at 809.089 kb on - strand, within Pf1N1B4_709 at 809.089 kb on - strand, within Pf1N1B4_709 at 809.220 kb on + strand, within Pf1N1B4_709 at 809.221 kb on - strand, within Pf1N1B4_709 at 809.221 kb on - strand at 809.221 kb on - strand, within Pf1N1B4_709 at 809.221 kb on - strand, within Pf1N1B4_709 at 809.341 kb on - strand, within Pf1N1B4_709 at 809.341 kb on - strand at 809.393 kb on - strand at 809.421 kb on + strand at 809.429 kb on + strand at 809.429 kb on + strand at 809.430 kb on - strand at 809.430 kb on - strand at 809.430 kb on - strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.669 kb on - strand, within Pf1N1B4_710 at 809.669 kb on - strand at 809.744 kb on - strand at 809.806 kb on - strand at 809.865 kb on + strand, within Pf1N1B4_710 at 809.865 kb on + strand, within Pf1N1B4_710 at 809.866 kb on - strand, within Pf1N1B4_710 at 809.866 kb on - strand, within Pf1N1B4_710 at 809.893 kb on + strand, within Pf1N1B4_710 at 809.893 kb on + strand, within Pf1N1B4_710 at 809.912 kb on - strand, within Pf1N1B4_710 at 810.017 kb on - strand at 810.036 kb on - strand at 810.059 kb on + strand at 810.102 kb on + strand at 810.102 kb on + strand at 810.102 kb on + strand at 810.102 kb on + strand at 810.102 kb on + strand at 810.103 kb on - strand at 810.103 kb on - strand at 810.103 kb on - strand at 810.103 kb on - strand at 810.130 kb on + strand at 810.130 kb on + strand at 810.130 kb on + strand at 810.196 kb on + strand at 810.196 kb on + strand at 810.196 kb on + strand at 810.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 808,148 + +1.0 808,148 + Pf1N1B4_708 0.14 +0.4 808,148 + Pf1N1B4_708 0.14 -0.9 808,148 + Pf1N1B4_708 0.14 -1.3 808,149 - Pf1N1B4_708 0.14 -0.8 808,269 + Pf1N1B4_708 0.27 +1.0 808,269 + Pf1N1B4_708 0.27 -0.3 808,269 + +1.0 808,269 + Pf1N1B4_708 0.27 +0.0 808,269 + Pf1N1B4_708 0.27 -1.6 808,269 + Pf1N1B4_708 0.27 +1.5 808,269 + Pf1N1B4_708 0.27 -0.6 808,270 - Pf1N1B4_708 0.27 +0.6 808,270 - +1.0 808,270 - Pf1N1B4_708 0.27 +0.5 808,270 - -1.0 808,270 - Pf1N1B4_708 0.27 -0.0 808,270 - Pf1N1B4_708 0.27 -1.3 808,324 - Pf1N1B4_708 0.33 -2.9 808,549 - Pf1N1B4_708 0.58 -1.6 808,908 + +1.0 808,908 + +1.0 808,909 - +0.0 808,909 - -0.8 808,916 - -2.9 809,088 + Pf1N1B4_709 0.16 -1.3 809,088 + Pf1N1B4_709 0.16 -0.8 809,088 + Pf1N1B4_709 0.16 -1.6 809,088 + Pf1N1B4_709 0.16 +1.0 809,088 + Pf1N1B4_709 0.16 +2.2 809,089 - Pf1N1B4_709 0.17 -0.8 809,089 - Pf1N1B4_709 0.17 -1.6 809,089 - Pf1N1B4_709 0.17 +0.4 809,220 + Pf1N1B4_709 0.49 -1.0 809,221 - Pf1N1B4_709 0.50 -1.6 809,221 - +2.9 809,221 - Pf1N1B4_709 0.50 -0.6 809,221 - Pf1N1B4_709 0.50 -1.3 809,341 - Pf1N1B4_709 0.79 -0.3 809,341 - +0.0 809,393 - -0.3 809,421 + +0.0 809,429 + +0.6 809,429 + -0.6 809,430 - -0.2 809,430 - +3.0 809,430 - +1.0 809,442 + -0.6 809,442 + -0.3 809,442 + -0.7 809,442 + +0.6 809,442 + -0.2 809,442 + -0.6 809,669 - Pf1N1B4_710 0.40 +1.6 809,669 - +1.0 809,744 - +0.0 809,806 - +0.0 809,865 + Pf1N1B4_710 0.72 +0.0 809,865 + Pf1N1B4_710 0.72 -0.3 809,866 - Pf1N1B4_710 0.72 -1.3 809,866 - Pf1N1B4_710 0.72 -0.3 809,893 + Pf1N1B4_710 0.77 +0.0 809,893 + Pf1N1B4_710 0.77 +1.1 809,912 - Pf1N1B4_710 0.80 +0.3 810,017 - +0.6 810,036 - -0.6 810,059 + +1.0 810,102 + +0.0 810,102 + +0.7 810,102 + -0.8 810,102 + +0.8 810,102 + +1.4 810,103 - +0.0 810,103 - -0.6 810,103 - +0.9 810,103 - +0.0 810,130 + +2.0 810,130 + +1.6 810,130 + -1.8 810,196 + +0.4 810,196 + -0.6 810,196 + +2.6 810,196 + +2.3
Or see this region's nucleotide sequence