Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_671 and Pf1N1B4_672 overlap by 4 nucleotides Pf1N1B4_672 and Pf1N1B4_673 overlap by 4 nucleotides
Pf1N1B4_671 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 767,032 to 768,576
_671
Pf1N1B4_672 - FIG00955538: hypothetical protein, at 768,573 to 769,736
_672
Pf1N1B4_673 - MoxR-like ATPases, at 769,733 to 770,734
_673
Position (kb) 768
769
770 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 767.650 kb on + strand, within Pf1N1B4_671 at 767.650 kb on + strand, within Pf1N1B4_671 at 767.651 kb on - strand, within Pf1N1B4_671 at 767.651 kb on - strand, within Pf1N1B4_671 at 767.651 kb on - strand, within Pf1N1B4_671 at 767.683 kb on + strand, within Pf1N1B4_671 at 767.683 kb on + strand, within Pf1N1B4_671 at 767.684 kb on - strand at 767.684 kb on - strand, within Pf1N1B4_671 at 767.684 kb on - strand, within Pf1N1B4_671 at 767.684 kb on - strand, within Pf1N1B4_671 at 767.684 kb on - strand, within Pf1N1B4_671 at 767.684 kb on - strand, within Pf1N1B4_671 at 767.859 kb on + strand, within Pf1N1B4_671 at 767.860 kb on - strand, within Pf1N1B4_671 at 768.083 kb on + strand, within Pf1N1B4_671 at 768.619 kb on + strand at 768.620 kb on - strand at 768.639 kb on + strand at 768.640 kb on - strand at 768.640 kb on - strand at 768.645 kb on + strand at 768.714 kb on + strand at 769.051 kb on - strand, within Pf1N1B4_672 at 769.051 kb on - strand, within Pf1N1B4_672 at 769.077 kb on + strand, within Pf1N1B4_672 at 769.078 kb on - strand, within Pf1N1B4_672 at 769.078 kb on - strand, within Pf1N1B4_672 at 769.243 kb on - strand, within Pf1N1B4_672 at 769.267 kb on - strand, within Pf1N1B4_672 at 769.305 kb on - strand, within Pf1N1B4_672 at 769.732 kb on + strand at 770.031 kb on - strand, within Pf1N1B4_673 at 770.077 kb on + strand, within Pf1N1B4_673 at 770.078 kb on - strand, within Pf1N1B4_673 at 770.078 kb on - strand, within Pf1N1B4_673 at 770.246 kb on + strand, within Pf1N1B4_673 at 770.247 kb on - strand, within Pf1N1B4_673 at 770.466 kb on - strand, within Pf1N1B4_673 at 770.548 kb on - strand, within Pf1N1B4_673 at 770.548 kb on - strand, within Pf1N1B4_673
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 767,650 + Pf1N1B4_671 0.40 -0.0 767,650 + Pf1N1B4_671 0.40 -1.6 767,651 - Pf1N1B4_671 0.40 +1.5 767,651 - Pf1N1B4_671 0.40 +0.4 767,651 - Pf1N1B4_671 0.40 +0.9 767,683 + Pf1N1B4_671 0.42 +0.5 767,683 + Pf1N1B4_671 0.42 -0.6 767,684 - -1.0 767,684 - Pf1N1B4_671 0.42 +1.9 767,684 - Pf1N1B4_671 0.42 -0.0 767,684 - Pf1N1B4_671 0.42 -0.0 767,684 - Pf1N1B4_671 0.42 +1.4 767,684 - Pf1N1B4_671 0.42 -2.2 767,859 + Pf1N1B4_671 0.54 -0.3 767,860 - Pf1N1B4_671 0.54 +0.8 768,083 + Pf1N1B4_671 0.68 -1.4 768,619 + +1.1 768,620 - +0.3 768,639 + +1.4 768,640 - +0.8 768,640 - -1.7 768,645 + -0.6 768,714 + -0.0 769,051 - Pf1N1B4_672 0.41 +3.6 769,051 - Pf1N1B4_672 0.41 +1.5 769,077 + Pf1N1B4_672 0.43 +2.0 769,078 - Pf1N1B4_672 0.43 -0.6 769,078 - Pf1N1B4_672 0.43 +0.3 769,243 - Pf1N1B4_672 0.58 +1.0 769,267 - Pf1N1B4_672 0.60 -0.6 769,305 - Pf1N1B4_672 0.63 +1.0 769,732 + -1.2 770,031 - Pf1N1B4_673 0.30 +0.4 770,077 + Pf1N1B4_673 0.34 -0.4 770,078 - Pf1N1B4_673 0.34 +1.7 770,078 - Pf1N1B4_673 0.34 +2.3 770,246 + Pf1N1B4_673 0.51 -1.6 770,247 - Pf1N1B4_673 0.51 -0.0 770,466 - Pf1N1B4_673 0.73 +1.6 770,548 - Pf1N1B4_673 0.81 +0.5 770,548 - Pf1N1B4_673 0.81 -0.7
Or see this region's nucleotide sequence