Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6023 and Pf1N1B4_6024 are separated by 374 nucleotides Pf1N1B4_6024 and Pf1N1B4_6025 are separated by 290 nucleotides Pf1N1B4_6025 and Pf1N1B4_6026 are separated by 72 nucleotides
Pf1N1B4_6023 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 489,159 to 491,081
_6023
Pf1N1B4_6024 - FIG00953292: hypothetical protein, at 491,456 to 491,758
_6024
Pf1N1B4_6025 - Cold shock protein CspG, at 492,049 to 492,261
_6025
Pf1N1B4_6026 - lipoprotein, putative, at 492,334 to 492,651
_6026
Position (kb) 491
492 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.422 kb on + strand at 491.423 kb on - strand at 491.472 kb on + strand at 491.472 kb on + strand at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand at 491.553 kb on - strand, within Pf1N1B4_6024 at 491.808 kb on + strand at 491.828 kb on - strand at 491.974 kb on + strand at 491.975 kb on - strand at 491.980 kb on - strand at 492.014 kb on + strand at 492.014 kb on + strand at 492.015 kb on - strand at 492.017 kb on + strand at 492.017 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.027 kb on - strand at 492.027 kb on - strand at 492.028 kb on + strand at 492.029 kb on - strand at 492.043 kb on + strand at 492.043 kb on + strand at 492.044 kb on - strand at 492.075 kb on + strand at 492.076 kb on - strand, within Pf1N1B4_6025 at 492.143 kb on + strand, within Pf1N1B4_6025 at 492.143 kb on + strand, within Pf1N1B4_6025 at 492.156 kb on + strand, within Pf1N1B4_6025 at 492.259 kb on + strand at 492.260 kb on - strand at 492.586 kb on - strand, within Pf1N1B4_6026 at 492.586 kb on - strand, within Pf1N1B4_6026 at 492.586 kb on - strand, within Pf1N1B4_6026 at 492.671 kb on - strand at 492.674 kb on + strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 491,422 + -0.6 491,423 - +0.2 491,472 + +1.1 491,472 + -0.1 491,552 + Pf1N1B4_6024 0.32 +0.5 491,552 + Pf1N1B4_6024 0.32 +2.2 491,552 + Pf1N1B4_6024 0.32 +0.3 491,552 + Pf1N1B4_6024 0.32 +1.1 491,552 + Pf1N1B4_6024 0.32 +1.1 491,552 + +1.6 491,553 - Pf1N1B4_6024 0.32 +1.0 491,808 + +0.2 491,828 - +0.3 491,974 + +0.5 491,975 - +2.2 491,980 - +1.5 492,014 + +1.6 492,014 + +0.5 492,015 - +1.2 492,017 + +1.8 492,017 + +1.2 492,026 + -1.0 492,026 + -0.5 492,026 + +0.4 492,026 + +2.2 492,026 + -2.6 492,026 + +0.3 492,027 - +0.8 492,027 - -0.8 492,028 + +1.4 492,029 - +0.6 492,043 + +0.2 492,043 + -1.5 492,044 - -2.2 492,075 + +0.8 492,076 - Pf1N1B4_6025 0.13 +0.4 492,143 + Pf1N1B4_6025 0.44 -1.5 492,143 + Pf1N1B4_6025 0.44 -1.0 492,156 + Pf1N1B4_6025 0.50 -1.8 492,259 + +0.4 492,260 - +0.8 492,586 - Pf1N1B4_6026 0.79 -0.2 492,586 - Pf1N1B4_6026 0.79 +0.8 492,586 - Pf1N1B4_6026 0.79 +1.4 492,671 - -0.8 492,674 + +2.3 492,675 - +1.2 492,675 - +1.1 492,675 - +1.4 492,675 - +0.4 492,675 - +0.7 492,675 - +1.4 492,675 - +0.8 492,675 - +2.4 492,675 - +1.1 492,675 - +1.7 492,675 - -1.5
Or see this region's nucleotide sequence