Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_590 and Pf1N1B4_591 are separated by 108 nucleotides Pf1N1B4_591 and Pf1N1B4_592 are separated by 231 nucleotides
Pf1N1B4_590 - Phosphogluconate repressor HexR, RpiR family, at 680,911 to 681,780
_590
Pf1N1B4_591 - Aldose 1-epimerase, at 681,889 to 682,758
_591
Pf1N1B4_592 - Glucose-selective porin OprB, at 682,990 to 684,336
_592
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 680.898 kb on + strand at 680.899 kb on - strand at 681.160 kb on + strand, within Pf1N1B4_590 at 681.160 kb on + strand, within Pf1N1B4_590 at 681.160 kb on + strand at 681.161 kb on - strand, within Pf1N1B4_590 at 681.161 kb on - strand, within Pf1N1B4_590 at 681.161 kb on - strand, within Pf1N1B4_590 at 681.202 kb on + strand, within Pf1N1B4_590 at 681.203 kb on - strand, within Pf1N1B4_590 at 681.203 kb on - strand, within Pf1N1B4_590 at 681.204 kb on + strand, within Pf1N1B4_590 at 681.618 kb on + strand, within Pf1N1B4_590 at 681.618 kb on + strand, within Pf1N1B4_590 at 681.619 kb on - strand, within Pf1N1B4_590 at 681.619 kb on - strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.624 kb on + strand, within Pf1N1B4_590 at 681.624 kb on + strand, within Pf1N1B4_590 at 681.624 kb on + strand, within Pf1N1B4_590 at 681.625 kb on - strand, within Pf1N1B4_590 at 681.774 kb on + strand at 681.774 kb on + strand at 681.774 kb on + strand at 681.774 kb on + strand at 681.775 kb on - strand at 681.778 kb on + strand at 681.779 kb on - strand at 682.007 kb on - strand, within Pf1N1B4_591 at 682.007 kb on - strand at 682.269 kb on + strand, within Pf1N1B4_591 at 682.269 kb on + strand, within Pf1N1B4_591 at 682.396 kb on + strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.742 kb on - strand at 682.843 kb on + strand at 682.843 kb on + strand at 682.843 kb on + strand at 682.843 kb on + strand at 682.843 kb on + strand at 682.965 kb on + strand at 682.965 kb on + strand at 682.965 kb on + strand at 682.965 kb on + strand at 682.966 kb on - strand at 682.966 kb on - strand at 682.966 kb on - strand at 682.966 kb on - strand at 682.966 kb on - strand at 683.066 kb on + strand at 683.066 kb on + strand at 683.066 kb on + strand at 683.066 kb on + strand at 683.066 kb on + strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.067 kb on - strand at 683.076 kb on + strand at 683.115 kb on - strand at 683.115 kb on - strand at 683.115 kb on - strand at 683.115 kb on - strand at 683.127 kb on - strand, within Pf1N1B4_592 at 683.127 kb on - strand, within Pf1N1B4_592 at 683.133 kb on - strand, within Pf1N1B4_592 at 683.133 kb on - strand, within Pf1N1B4_592 at 683.133 kb on - strand, within Pf1N1B4_592 at 683.171 kb on + strand, within Pf1N1B4_592 at 683.171 kb on + strand, within Pf1N1B4_592 at 683.172 kb on - strand, within Pf1N1B4_592 at 683.172 kb on - strand, within Pf1N1B4_592 at 683.269 kb on - strand, within Pf1N1B4_592 at 683.294 kb on + strand, within Pf1N1B4_592 at 683.294 kb on + strand, within Pf1N1B4_592 at 683.295 kb on - strand at 683.295 kb on - strand, within Pf1N1B4_592 at 683.295 kb on - strand, within Pf1N1B4_592 at 683.295 kb on - strand, within Pf1N1B4_592 at 683.315 kb on + strand, within Pf1N1B4_592 at 683.315 kb on + strand, within Pf1N1B4_592 at 683.315 kb on + strand, within Pf1N1B4_592 at 683.316 kb on - strand, within Pf1N1B4_592 at 683.316 kb on - strand, within Pf1N1B4_592 at 683.316 kb on - strand, within Pf1N1B4_592 at 683.429 kb on + strand, within Pf1N1B4_592 at 683.457 kb on - strand, within Pf1N1B4_592 at 683.531 kb on + strand, within Pf1N1B4_592 at 683.531 kb on + strand, within Pf1N1B4_592 at 683.531 kb on + strand, within Pf1N1B4_592 at 683.531 kb on + strand at 683.531 kb on + strand, within Pf1N1B4_592 at 683.532 kb on - strand, within Pf1N1B4_592 at 683.532 kb on - strand, within Pf1N1B4_592 at 683.532 kb on - strand, within Pf1N1B4_592 at 683.547 kb on - strand, within Pf1N1B4_592 at 683.614 kb on - strand, within Pf1N1B4_592 at 683.672 kb on + strand, within Pf1N1B4_592 at 683.672 kb on + strand, within Pf1N1B4_592 at 683.690 kb on + strand, within Pf1N1B4_592 at 683.691 kb on - strand, within Pf1N1B4_592 at 683.691 kb on - strand, within Pf1N1B4_592 at 683.711 kb on + strand, within Pf1N1B4_592 at 683.711 kb on + strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 680,898 + -1.8 680,899 - +2.2 681,160 + Pf1N1B4_590 0.29 +0.5 681,160 + Pf1N1B4_590 0.29 -0.0 681,160 + -0.0 681,161 - Pf1N1B4_590 0.29 +1.4 681,161 - Pf1N1B4_590 0.29 +2.9 681,161 - Pf1N1B4_590 0.29 +1.6 681,202 + Pf1N1B4_590 0.33 +1.0 681,203 - Pf1N1B4_590 0.34 +1.3 681,203 - Pf1N1B4_590 0.34 -2.0 681,204 + Pf1N1B4_590 0.34 +0.4 681,618 + Pf1N1B4_590 0.81 +0.7 681,618 + Pf1N1B4_590 0.81 -0.3 681,619 - Pf1N1B4_590 0.81 -0.0 681,619 - Pf1N1B4_590 0.81 -0.6 681,622 + Pf1N1B4_590 0.82 -0.8 681,622 + Pf1N1B4_590 0.82 +1.5 681,622 + Pf1N1B4_590 0.82 -1.8 681,622 + Pf1N1B4_590 0.82 +1.4 681,622 + -0.0 681,622 + Pf1N1B4_590 0.82 +1.0 681,622 + Pf1N1B4_590 0.82 +2.1 681,622 + Pf1N1B4_590 0.82 -0.1 681,622 + Pf1N1B4_590 0.82 -0.3 681,622 + Pf1N1B4_590 0.82 -0.6 681,622 + -0.0 681,622 + Pf1N1B4_590 0.82 +0.9 681,622 + Pf1N1B4_590 0.82 +0.4 681,622 + Pf1N1B4_590 0.82 -1.4 681,622 + Pf1N1B4_590 0.82 -0.4 681,622 + Pf1N1B4_590 0.82 +0.2 681,622 + Pf1N1B4_590 0.82 -0.0 681,622 + Pf1N1B4_590 0.82 +1.3 681,622 + +0.2 681,622 + Pf1N1B4_590 0.82 +1.2 681,622 + Pf1N1B4_590 0.82 -0.6 681,622 + Pf1N1B4_590 0.82 +1.0 681,622 + Pf1N1B4_590 0.82 +1.2 681,622 + Pf1N1B4_590 0.82 +0.3 681,622 + Pf1N1B4_590 0.82 +2.0 681,622 + Pf1N1B4_590 0.82 +1.3 681,623 - Pf1N1B4_590 0.82 -0.4 681,623 - Pf1N1B4_590 0.82 +0.5 681,623 - Pf1N1B4_590 0.82 +0.4 681,623 - Pf1N1B4_590 0.82 +2.0 681,623 - Pf1N1B4_590 0.82 -0.2 681,623 - Pf1N1B4_590 0.82 +0.1 681,623 - Pf1N1B4_590 0.82 -1.0 681,623 - Pf1N1B4_590 0.82 -1.3 681,623 - Pf1N1B4_590 0.82 -0.0 681,623 - Pf1N1B4_590 0.82 +0.7 681,623 - Pf1N1B4_590 0.82 -0.6 681,623 - Pf1N1B4_590 0.82 +0.7 681,623 - Pf1N1B4_590 0.82 -0.6 681,623 - Pf1N1B4_590 0.82 -1.4 681,623 - Pf1N1B4_590 0.82 -0.1 681,623 - Pf1N1B4_590 0.82 +0.3 681,623 - Pf1N1B4_590 0.82 -1.6 681,623 - Pf1N1B4_590 0.82 +2.2 681,623 - Pf1N1B4_590 0.82 +0.6 681,623 - Pf1N1B4_590 0.82 +1.3 681,623 - Pf1N1B4_590 0.82 -1.6 681,623 - Pf1N1B4_590 0.82 +1.0 681,623 - Pf1N1B4_590 0.82 +2.1 681,623 - Pf1N1B4_590 0.82 +1.3 681,623 - Pf1N1B4_590 0.82 +0.8 681,623 - Pf1N1B4_590 0.82 -0.3 681,623 - Pf1N1B4_590 0.82 +0.5 681,623 - Pf1N1B4_590 0.82 +2.5 681,623 - Pf1N1B4_590 0.82 +1.1 681,623 - Pf1N1B4_590 0.82 +1.0 681,623 - Pf1N1B4_590 0.82 +0.6 681,623 - Pf1N1B4_590 0.82 +2.1 681,623 - Pf1N1B4_590 0.82 -0.6 681,623 - Pf1N1B4_590 0.82 +0.5 681,623 - Pf1N1B4_590 0.82 +1.0 681,623 - Pf1N1B4_590 0.82 +2.1 681,623 - Pf1N1B4_590 0.82 -0.8 681,623 - Pf1N1B4_590 0.82 -0.6 681,624 + Pf1N1B4_590 0.82 +1.0 681,624 + Pf1N1B4_590 0.82 +1.6 681,624 + Pf1N1B4_590 0.82 +0.4 681,625 - Pf1N1B4_590 0.82 +1.4 681,774 + +0.1 681,774 + +1.2 681,774 + -0.0 681,774 + +1.0 681,775 - +3.1 681,778 + +0.6 681,779 - -0.0 682,007 - Pf1N1B4_591 0.14 -0.8 682,007 - +0.4 682,269 + Pf1N1B4_591 0.44 -2.0 682,269 + Pf1N1B4_591 0.44 -1.0 682,396 + Pf1N1B4_591 0.58 -0.4 682,397 - Pf1N1B4_591 0.58 -0.2 682,397 - Pf1N1B4_591 0.58 -0.8 682,397 - Pf1N1B4_591 0.58 -1.2 682,397 - Pf1N1B4_591 0.58 -3.4 682,397 - Pf1N1B4_591 0.58 -1.4 682,742 - -0.7 682,843 + +1.0 682,843 + -0.9 682,843 + -0.8 682,843 + -0.9 682,843 + -0.5 682,965 + -1.4 682,965 + -0.0 682,965 + -2.7 682,965 + -1.0 682,966 - +2.4 682,966 - +0.6 682,966 - -0.0 682,966 - +2.3 682,966 - +1.8 683,066 + -0.6 683,066 + +1.0 683,066 + -1.3 683,066 + +1.6 683,066 + -0.3 683,067 - -0.0 683,067 - +1.8 683,067 - +2.0 683,067 - +1.6 683,067 - -0.0 683,067 - +0.4 683,067 - +0.7 683,067 - +0.2 683,067 - -0.2 683,067 - +1.1 683,067 - +2.6 683,067 - -0.9 683,067 - +2.6 683,067 - +0.5 683,067 - +1.0 683,067 - +1.4 683,067 - +0.3 683,067 - +1.0 683,076 + -0.5 683,115 - +0.4 683,115 - -0.8 683,115 - +2.0 683,115 - +1.2 683,127 - Pf1N1B4_592 0.10 +0.7 683,127 - Pf1N1B4_592 0.10 +0.2 683,133 - Pf1N1B4_592 0.11 -0.0 683,133 - Pf1N1B4_592 0.11 -1.3 683,133 - Pf1N1B4_592 0.11 -0.0 683,171 + Pf1N1B4_592 0.13 +0.6 683,171 + Pf1N1B4_592 0.13 +1.0 683,172 - Pf1N1B4_592 0.14 +0.5 683,172 - Pf1N1B4_592 0.14 +0.2 683,269 - Pf1N1B4_592 0.21 +0.8 683,294 + Pf1N1B4_592 0.23 +0.4 683,294 + Pf1N1B4_592 0.23 -1.0 683,295 - -1.0 683,295 - Pf1N1B4_592 0.23 +2.1 683,295 - Pf1N1B4_592 0.23 +0.9 683,295 - Pf1N1B4_592 0.23 +1.5 683,315 + Pf1N1B4_592 0.24 -0.3 683,315 + Pf1N1B4_592 0.24 +1.0 683,315 + Pf1N1B4_592 0.24 +0.7 683,316 - Pf1N1B4_592 0.24 +1.0 683,316 - Pf1N1B4_592 0.24 -0.8 683,316 - Pf1N1B4_592 0.24 +1.2 683,429 + Pf1N1B4_592 0.33 +0.7 683,457 - Pf1N1B4_592 0.35 +0.5 683,531 + Pf1N1B4_592 0.40 -1.0 683,531 + Pf1N1B4_592 0.40 +1.0 683,531 + Pf1N1B4_592 0.40 -2.1 683,531 + -0.0 683,531 + Pf1N1B4_592 0.40 -1.0 683,532 - Pf1N1B4_592 0.40 -1.3 683,532 - Pf1N1B4_592 0.40 -1.3 683,532 - Pf1N1B4_592 0.40 -1.5 683,547 - Pf1N1B4_592 0.41 +0.5 683,614 - Pf1N1B4_592 0.46 +0.6 683,672 + Pf1N1B4_592 0.51 +0.4 683,672 + Pf1N1B4_592 0.51 -1.3 683,690 + Pf1N1B4_592 0.52 -1.0 683,691 - Pf1N1B4_592 0.52 -2.2 683,691 - Pf1N1B4_592 0.52 +3.6 683,711 + Pf1N1B4_592 0.54 +0.6 683,711 + Pf1N1B4_592 0.54 -0.5 683,712 - Pf1N1B4_592 0.54 +1.0 683,712 - Pf1N1B4_592 0.54 +0.7 683,712 - Pf1N1B4_592 0.54 -0.2 683,712 - Pf1N1B4_592 0.54 +1.0 683,712 - Pf1N1B4_592 0.54 +0.1
Or see this region's nucleotide sequence