Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5903 and Pf1N1B4_5904 overlap by 12 nucleotides Pf1N1B4_5904 and Pf1N1B4_5905 are separated by 24 nucleotides Pf1N1B4_5905 and Pf1N1B4_5906 are separated by 162 nucleotides
Pf1N1B4_5903 - FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin), at 346,531 to 346,839
_5903
Pf1N1B4_5904 - FIG00955320: hypothetical protein, at 346,828 to 347,736
_5904
Pf1N1B4_5905 - Transcriptional regulator, LysR family, at 347,761 to 348,666
_5905
Pf1N1B4_5906 - Esterase/lipase, at 348,829 to 349,845
_5906
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2 at 346.767 kb on - strand, within Pf1N1B4_5903 at 346.856 kb on - strand at 346.886 kb on + strand at 346.928 kb on + strand, within Pf1N1B4_5904 at 346.929 kb on - strand, within Pf1N1B4_5904 at 347.034 kb on - strand, within Pf1N1B4_5904 at 347.180 kb on + strand, within Pf1N1B4_5904 at 347.957 kb on + strand, within Pf1N1B4_5905 at 348.115 kb on + strand, within Pf1N1B4_5905 at 348.116 kb on - strand, within Pf1N1B4_5905 at 348.155 kb on + strand, within Pf1N1B4_5905 at 348.155 kb on + strand, within Pf1N1B4_5905 at 348.155 kb on + strand, within Pf1N1B4_5905 at 348.251 kb on + strand, within Pf1N1B4_5905 at 348.473 kb on + strand, within Pf1N1B4_5905 at 348.473 kb on + strand at 348.474 kb on - strand, within Pf1N1B4_5905 at 348.589 kb on + strand at 348.589 kb on + strand at 348.590 kb on - strand at 348.642 kb on + strand at 348.643 kb on - strand at 348.643 kb on - strand at 348.643 kb on - strand at 348.648 kb on + strand at 348.812 kb on - strand at 348.813 kb on + strand at 348.814 kb on - strand at 348.814 kb on - strand at 348.814 kb on - strand at 349.234 kb on + strand, within Pf1N1B4_5906 at 349.235 kb on - strand, within Pf1N1B4_5906 at 349.292 kb on - strand, within Pf1N1B4_5906 at 349.553 kb on - strand, within Pf1N1B4_5906
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 346,767 - Pf1N1B4_5903 0.76 +1.0 346,856 - -0.5 346,886 + +0.5 346,928 + Pf1N1B4_5904 0.11 -1.2 346,929 - Pf1N1B4_5904 0.11 +1.2 347,034 - Pf1N1B4_5904 0.23 -0.8 347,180 + Pf1N1B4_5904 0.39 -0.5 347,957 + Pf1N1B4_5905 0.22 +0.2 348,115 + Pf1N1B4_5905 0.39 -1.5 348,116 - Pf1N1B4_5905 0.39 +1.0 348,155 + Pf1N1B4_5905 0.43 +0.4 348,155 + Pf1N1B4_5905 0.43 +0.5 348,155 + Pf1N1B4_5905 0.43 +0.2 348,251 + Pf1N1B4_5905 0.54 +0.2 348,473 + Pf1N1B4_5905 0.79 +1.0 348,473 + +0.8 348,474 - Pf1N1B4_5905 0.79 +2.1 348,589 + -0.4 348,589 + -1.2 348,590 - +0.1 348,642 + +0.5 348,643 - -0.2 348,643 - +0.8 348,643 - +1.6 348,648 + +1.1 348,812 - -1.2 348,813 + +0.0 348,814 - +0.3 348,814 - +0.4 348,814 - +1.3 349,234 + Pf1N1B4_5906 0.40 -2.0 349,235 - Pf1N1B4_5906 0.40 -1.8 349,292 - Pf1N1B4_5906 0.46 -0.8 349,553 - Pf1N1B4_5906 0.71 +0.8
Or see this region's nucleotide sequence