Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5618 and Pf1N1B4_5619 are separated by 2 nucleotides Pf1N1B4_5619 and Pf1N1B4_5620 are separated by 184 nucleotides Pf1N1B4_5620 and Pf1N1B4_5621 are separated by 0 nucleotides
Pf1N1B4_5618 - Excinuclease ABC subunit C, at 44,031 to 45,854
_5618
Pf1N1B4_5619 - BarA-associated response regulator UvrY (= GacA = SirA), at 45,857 to 46,441
_5619
Pf1N1B4_5620 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 46,626 to 47,069
_5620
Pf1N1B4_5621 - Hydrolase, carbon-nitrogen family, at 47,070 to 47,828
_5621
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 45.544 kb on + strand, within Pf1N1B4_5618 at 45.544 kb on + strand at 45.545 kb on - strand, within Pf1N1B4_5618 at 45.581 kb on - strand, within Pf1N1B4_5618 at 45.618 kb on + strand, within Pf1N1B4_5618 at 45.718 kb on + strand at 45.761 kb on - strand at 45.761 kb on - strand at 45.955 kb on + strand, within Pf1N1B4_5619 at 45.955 kb on + strand, within Pf1N1B4_5619 at 46.128 kb on + strand at 46.128 kb on + strand, within Pf1N1B4_5619 at 46.129 kb on - strand, within Pf1N1B4_5619 at 46.485 kb on - strand at 46.493 kb on - strand at 46.522 kb on + strand at 46.580 kb on + strand at 46.647 kb on - strand at 46.837 kb on - strand, within Pf1N1B4_5620 at 46.856 kb on - strand, within Pf1N1B4_5620 at 46.889 kb on - strand, within Pf1N1B4_5620 at 47.135 kb on + strand at 47.136 kb on - strand at 47.273 kb on - strand, within Pf1N1B4_5621
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 45,544 + Pf1N1B4_5618 0.83 -1.2 45,544 + -0.2 45,545 - Pf1N1B4_5618 0.83 -1.2 45,581 - Pf1N1B4_5618 0.85 -0.2 45,618 + Pf1N1B4_5618 0.87 -0.2 45,718 + -0.8 45,761 - -1.7 45,761 - -1.0 45,955 + Pf1N1B4_5619 0.17 -0.5 45,955 + Pf1N1B4_5619 0.17 +2.3 46,128 + +2.4 46,128 + Pf1N1B4_5619 0.46 -0.5 46,129 - Pf1N1B4_5619 0.46 +1.4 46,485 - -0.8 46,493 - +2.4 46,522 + -0.9 46,580 + +0.8 46,647 - +1.3 46,837 - Pf1N1B4_5620 0.48 +0.2 46,856 - Pf1N1B4_5620 0.52 -0.1 46,889 - Pf1N1B4_5620 0.59 +0.2 47,135 + +0.8 47,136 - -0.2 47,273 - Pf1N1B4_5621 0.27 -2.5
Or see this region's nucleotide sequence