Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5511 and Pf1N1B4_5512 are separated by 342 nucleotides Pf1N1B4_5512 and Pf1N1B4_5513 are separated by 75 nucleotides Pf1N1B4_5513 and Pf1N1B4_5514 are separated by 69 nucleotides Pf1N1B4_5514 and Pf1N1B4_5515 are separated by 50 nucleotides
Pf1N1B4_5511 - hypothetical protein, at 260,474 to 260,755
_5511
Pf1N1B4_5512 - hypothetical protein, at 261,098 to 261,244
_5512
Pf1N1B4_5513 - hypothetical protein, at 261,320 to 261,517
_5513
Pf1N1B4_5514 - RecA protein, at 261,587 to 262,636
_5514
Pf1N1B4_5515 - ATP-dependent DNA helicase pcrA (EC 3.6.1.-), at 262,687 to 266,067
_5515
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 260.639 kb on + strand, within Pf1N1B4_5511 at 260.639 kb on + strand, within Pf1N1B4_5511 at 260.640 kb on - strand, within Pf1N1B4_5511 at 260.640 kb on - strand, within Pf1N1B4_5511 at 260.691 kb on - strand, within Pf1N1B4_5511 at 260.786 kb on + strand at 260.786 kb on + strand at 260.787 kb on - strand at 260.787 kb on - strand at 260.787 kb on - strand at 260.787 kb on - strand at 260.790 kb on + strand at 260.920 kb on + strand at 260.920 kb on + strand at 261.018 kb on + strand at 261.018 kb on + strand at 261.164 kb on - strand, within Pf1N1B4_5512 at 261.164 kb on - strand, within Pf1N1B4_5512 at 261.166 kb on - strand, within Pf1N1B4_5512 at 261.222 kb on - strand, within Pf1N1B4_5512 at 261.260 kb on + strand at 261.260 kb on + strand at 261.261 kb on - strand at 261.261 kb on - strand at 261.265 kb on + strand at 261.265 kb on + strand at 261.266 kb on - strand at 261.266 kb on - strand at 261.287 kb on - strand at 261.287 kb on - strand at 261.296 kb on - strand at 261.316 kb on + strand at 261.316 kb on + strand at 261.317 kb on - strand at 261.317 kb on - strand at 261.321 kb on + strand at 261.321 kb on + strand at 261.321 kb on + strand at 261.322 kb on - strand at 261.322 kb on - strand at 261.322 kb on - strand at 261.322 kb on - strand at 261.458 kb on + strand, within Pf1N1B4_5513 at 261.458 kb on + strand, within Pf1N1B4_5513 at 261.459 kb on - strand, within Pf1N1B4_5513 at 261.459 kb on - strand, within Pf1N1B4_5513 at 261.459 kb on - strand, within Pf1N1B4_5513 at 261.468 kb on + strand, within Pf1N1B4_5513 at 261.534 kb on + strand at 261.535 kb on - strand at 261.550 kb on - strand at 261.555 kb on - strand at 261.668 kb on - strand at 261.712 kb on - strand, within Pf1N1B4_5514 at 261.712 kb on - strand, within Pf1N1B4_5514 at 261.712 kb on - strand, within Pf1N1B4_5514 at 261.712 kb on - strand, within Pf1N1B4_5514 at 261.712 kb on - strand, within Pf1N1B4_5514 at 261.712 kb on - strand, within Pf1N1B4_5514 at 261.712 kb on - strand, within Pf1N1B4_5514 at 261.756 kb on + strand, within Pf1N1B4_5514 at 261.757 kb on - strand, within Pf1N1B4_5514 at 261.757 kb on - strand, within Pf1N1B4_5514 at 261.757 kb on - strand, within Pf1N1B4_5514 at 261.757 kb on - strand, within Pf1N1B4_5514 at 261.757 kb on - strand, within Pf1N1B4_5514 at 261.757 kb on - strand, within Pf1N1B4_5514 at 261.757 kb on - strand, within Pf1N1B4_5514 at 261.763 kb on - strand, within Pf1N1B4_5514 at 261.843 kb on + strand, within Pf1N1B4_5514 at 261.843 kb on + strand, within Pf1N1B4_5514 at 261.844 kb on - strand, within Pf1N1B4_5514 at 261.844 kb on - strand, within Pf1N1B4_5514 at 261.844 kb on - strand, within Pf1N1B4_5514 at 261.844 kb on - strand, within Pf1N1B4_5514 at 261.844 kb on - strand, within Pf1N1B4_5514 at 261.847 kb on + strand at 261.848 kb on - strand, within Pf1N1B4_5514 at 261.848 kb on - strand, within Pf1N1B4_5514 at 261.848 kb on - strand, within Pf1N1B4_5514 at 261.848 kb on - strand, within Pf1N1B4_5514 at 261.981 kb on + strand, within Pf1N1B4_5514 at 261.981 kb on + strand, within Pf1N1B4_5514 at 261.981 kb on + strand, within Pf1N1B4_5514 at 261.981 kb on + strand, within Pf1N1B4_5514 at 261.981 kb on + strand, within Pf1N1B4_5514 at 261.981 kb on + strand, within Pf1N1B4_5514 at 261.982 kb on - strand, within Pf1N1B4_5514 at 261.982 kb on - strand, within Pf1N1B4_5514 at 261.982 kb on - strand, within Pf1N1B4_5514 at 261.982 kb on - strand, within Pf1N1B4_5514 at 262.307 kb on + strand, within Pf1N1B4_5514 at 262.308 kb on - strand, within Pf1N1B4_5514 at 262.326 kb on + strand, within Pf1N1B4_5514 at 262.561 kb on + strand at 262.562 kb on - strand at 262.562 kb on - strand at 262.562 kb on - strand at 262.562 kb on - strand at 262.562 kb on - strand at 262.562 kb on - strand at 262.682 kb on - strand at 262.684 kb on - strand at 262.689 kb on - strand at 262.689 kb on - strand at 262.689 kb on - strand at 262.796 kb on - strand at 262.824 kb on - strand at 262.844 kb on + strand at 262.845 kb on - strand at 262.845 kb on - strand at 262.845 kb on - strand at 262.845 kb on - strand at 262.848 kb on + strand at 262.848 kb on + strand at 262.848 kb on + strand at 262.848 kb on + strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.849 kb on - strand at 262.852 kb on + strand at 262.853 kb on - strand at 262.853 kb on - strand at 262.853 kb on - strand at 262.853 kb on - strand at 262.853 kb on - strand at 262.853 kb on - strand at 262.853 kb on - strand at 262.986 kb on - strand at 263.216 kb on - strand, within Pf1N1B4_5515 at 263.225 kb on + strand, within Pf1N1B4_5515 at 263.506 kb on - strand, within Pf1N1B4_5515 at 263.541 kb on - strand, within Pf1N1B4_5515 at 263.541 kb on - strand, within Pf1N1B4_5515 at 263.541 kb on - strand, within Pf1N1B4_5515 at 263.541 kb on - strand at 263.541 kb on - strand, within Pf1N1B4_5515 at 263.541 kb on - strand, within Pf1N1B4_5515 at 263.541 kb on - strand, within Pf1N1B4_5515 at 263.573 kb on + strand, within Pf1N1B4_5515 at 263.574 kb on - strand, within Pf1N1B4_5515 at 263.574 kb on - strand, within Pf1N1B4_5515 at 263.574 kb on - strand, within Pf1N1B4_5515
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 260,639 + Pf1N1B4_5511 0.59 +1.1 260,639 + Pf1N1B4_5511 0.59 +0.4 260,640 - Pf1N1B4_5511 0.59 -0.2 260,640 - Pf1N1B4_5511 0.59 +0.9 260,691 - Pf1N1B4_5511 0.77 -1.8 260,786 + +0.9 260,786 + +0.1 260,787 - +0.6 260,787 - +1.2 260,787 - -0.6 260,787 - +0.7 260,790 + -1.6 260,920 + -1.0 260,920 + +0.2 261,018 + -1.8 261,018 + -0.3 261,164 - Pf1N1B4_5512 0.45 -0.4 261,164 - Pf1N1B4_5512 0.45 +0.6 261,166 - Pf1N1B4_5512 0.46 -0.8 261,222 - Pf1N1B4_5512 0.84 -2.1 261,260 + -1.4 261,260 + -1.4 261,261 - -0.8 261,261 - -0.8 261,265 + -0.1 261,265 + +3.2 261,266 - -0.9 261,266 - +0.2 261,287 - +2.0 261,287 - -1.6 261,296 - -2.2 261,316 + +0.1 261,316 + +1.6 261,317 - -0.4 261,317 - -1.6 261,321 + +1.8 261,321 + -0.1 261,321 + -0.4 261,322 - -0.4 261,322 - +1.1 261,322 - +0.5 261,322 - +0.2 261,458 + Pf1N1B4_5513 0.70 +0.5 261,458 + Pf1N1B4_5513 0.70 -0.1 261,459 - Pf1N1B4_5513 0.70 +0.2 261,459 - Pf1N1B4_5513 0.70 -1.0 261,459 - Pf1N1B4_5513 0.70 +0.6 261,468 + Pf1N1B4_5513 0.75 +0.3 261,534 + +0.4 261,535 - -0.6 261,550 - +0.6 261,555 - +1.2 261,668 - -0.5 261,712 - Pf1N1B4_5514 0.12 +0.9 261,712 - Pf1N1B4_5514 0.12 +1.8 261,712 - Pf1N1B4_5514 0.12 +0.6 261,712 - Pf1N1B4_5514 0.12 -0.6 261,712 - Pf1N1B4_5514 0.12 -1.4 261,712 - Pf1N1B4_5514 0.12 +1.0 261,712 - Pf1N1B4_5514 0.12 +0.9 261,756 + Pf1N1B4_5514 0.16 -0.6 261,757 - Pf1N1B4_5514 0.16 +3.8 261,757 - Pf1N1B4_5514 0.16 +0.0 261,757 - Pf1N1B4_5514 0.16 +0.1 261,757 - Pf1N1B4_5514 0.16 +0.9 261,757 - Pf1N1B4_5514 0.16 +0.4 261,757 - Pf1N1B4_5514 0.16 +0.1 261,757 - Pf1N1B4_5514 0.16 +0.5 261,763 - Pf1N1B4_5514 0.17 -0.1 261,843 + Pf1N1B4_5514 0.24 -0.6 261,843 + Pf1N1B4_5514 0.24 -1.2 261,844 - Pf1N1B4_5514 0.24 +0.2 261,844 - Pf1N1B4_5514 0.24 +0.2 261,844 - Pf1N1B4_5514 0.24 -0.4 261,844 - Pf1N1B4_5514 0.24 +0.4 261,844 - Pf1N1B4_5514 0.24 +3.0 261,847 + +0.9 261,848 - Pf1N1B4_5514 0.25 +1.5 261,848 - Pf1N1B4_5514 0.25 -0.1 261,848 - Pf1N1B4_5514 0.25 -0.1 261,848 - Pf1N1B4_5514 0.25 -0.8 261,981 + Pf1N1B4_5514 0.38 +2.0 261,981 + Pf1N1B4_5514 0.38 +1.5 261,981 + Pf1N1B4_5514 0.38 -0.4 261,981 + Pf1N1B4_5514 0.38 -1.4 261,981 + Pf1N1B4_5514 0.38 +0.6 261,981 + Pf1N1B4_5514 0.38 +0.2 261,982 - Pf1N1B4_5514 0.38 +1.2 261,982 - Pf1N1B4_5514 0.38 -1.1 261,982 - Pf1N1B4_5514 0.38 +1.4 261,982 - Pf1N1B4_5514 0.38 +0.6 262,307 + Pf1N1B4_5514 0.69 -0.6 262,308 - Pf1N1B4_5514 0.69 +0.2 262,326 + Pf1N1B4_5514 0.70 +2.8 262,561 + +0.6 262,562 - +0.0 262,562 - +0.2 262,562 - -0.8 262,562 - -1.1 262,562 - -0.6 262,562 - +1.0 262,682 - +0.9 262,684 - -1.6 262,689 - +1.4 262,689 - +2.5 262,689 - -1.6 262,796 - -0.2 262,824 - +2.5 262,844 + +0.8 262,845 - -1.6 262,845 - +1.5 262,845 - -0.7 262,845 - -0.8 262,848 + -1.1 262,848 + +1.4 262,848 + -0.4 262,848 + +0.9 262,849 - -2.6 262,849 - -0.1 262,849 - +0.1 262,849 - -1.1 262,849 - +1.6 262,849 - -0.4 262,849 - -0.6 262,849 - -0.7 262,849 - +0.1 262,849 - -0.4 262,849 - -0.5 262,849 - +0.6 262,849 - -0.8 262,852 + +0.2 262,853 - -1.4 262,853 - +0.5 262,853 - -0.4 262,853 - +0.8 262,853 - +1.5 262,853 - -1.2 262,853 - +0.5 262,986 - -0.9 263,216 - Pf1N1B4_5515 0.16 +0.1 263,225 + Pf1N1B4_5515 0.16 +1.9 263,506 - Pf1N1B4_5515 0.24 -0.1 263,541 - Pf1N1B4_5515 0.25 +0.2 263,541 - Pf1N1B4_5515 0.25 +1.8 263,541 - Pf1N1B4_5515 0.25 -0.4 263,541 - +1.8 263,541 - Pf1N1B4_5515 0.25 +0.4 263,541 - Pf1N1B4_5515 0.25 +0.2 263,541 - Pf1N1B4_5515 0.25 +0.2 263,573 + Pf1N1B4_5515 0.26 +0.2 263,574 - Pf1N1B4_5515 0.26 +1.7 263,574 - Pf1N1B4_5515 0.26 +0.1 263,574 - Pf1N1B4_5515 0.26 +1.2
Or see this region's nucleotide sequence